KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:27:32 2014 Check: 00 .. Name: ENSTTRP00000004277/1-303 Len: 498 Check: 2971 Weight: 1.00 Name: ENSP00000340979/1-328 Len: 498 Check: 223 Weight: 1.00 Name: ENSBTAP00000025877/1-323 Len: 498 Check: 4542 Weight: 1.00 Name: BACU013584/1-387 Len: 498 Check: 7252 Weight: 1.00 Name: bmy_14840T0/1-172 Len: 498 Check: 9470 Weight: 1.00 // 1 50 ENSTTRP00000004277/1-303 ---------- ---------- --ISQTKLSA DDEWNLRQER MYRMH-GHES ENSP00000340979/1-328 MAAGTAARKA APVLEAPPQQ EQLSHTKLSA EDTWNLQQER MYKMHRGHDS ENSBTAP00000025877/1-323 -----MAARA APGLEGAPQH EQISHTKLSA DDEWNLQQER MYKMHRGHES BACU013584/1-387 ---------- ---------- ---------- ---------- ---MHRDHES bmy_14840T0/1-172 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000004277/1-303 VHVEMVLIFL CALVIAQIVL VQWRQKHGHS DN-------- ---------- ENSP00000340979/1-328 MHVEMILIFL CVLVIAQIVL VQWRQRHGRS YN-------- ---------- ENSBTAP00000025877/1-323 MHVEMVLIFL CALVVAQIVL VQWRQRHGRS YN-------- ---------- BACU013584/1-387 MHMEMILTFL CALVIAQIVL VQWRQKHGHS YHGCESSPAE RSGTAGRRAP bmy_14840T0/1-172 ---------- ---------M SPTGRKSGKY SN-------- ---------- 101 150 ENSTTRP00000004277/1-303 ---------- LVTLLQMWVV P-FFTI---- ---------- ---------- ENSP00000340979/1-328 ---------- LVTLLQMWVV PLYFTI---- ---------- ---------- ENSBTAP00000025877/1-323 ---------- LVTLLQMWVV PLYFTI---- ---------- ---------- BACU013584/1-387 DAAASTPLAA ASTPLPPFAI AVHLRMCCHS NSRWAPCSPV RLPEHFPSCD bmy_14840T0/1-172 ---------- ---------- ----NV---- ---------- ---------- 151 200 ENSTTRP00000004277/1-303 ---------- ---------- ---------- ---------- ---------K ENSP00000340979/1-328 ---------- ---------- ---------- ---------- ---------K ENSBTAP00000025877/1-323 ---------- ---------- ---------- ---------- ---------K BACU013584/1-387 LVSSPPQSTR EVDIVAPDFT TKVQLICPKS HSCCTLKFLS SEISGEGGDR bmy_14840T0/1-172 ---------- ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000004277/1-303 LHWWWFLSMW GMFSFITSYI LCSATRKPFS GR-------- ---------- ENSP00000340979/1-328 LYWWRFLSMW GMFSVITSYI LFRATRKPLS GR-------- ---------- ENSBTAP00000025877/1-323 LYWWRFLSMW GMFSVITSYI LFRATRKPLS GR-------- ---------- BACU013584/1-387 RWIFWIISHP NVQITVPSIA VHVQSSLQVG GNINFCLYLD ALNDVPQCSA bmy_14840T0/1-172 ---------- ---------- ---------- ---------- ---------- 251 300 ENSTTRP00000004277/1-303 ---------- ---------- ---------- ---------T PXXXXXXXXX ENSP00000340979/1-328 ---------- ---------- ---------- ---------T PRLVYKWFLL ENSBTAP00000025877/1-323 ---------- ---------- ---------- ---------T PRLVYKWFLL BACU013584/1-387 LASHKDRWPK ESLWQKDPKS PFWLPLEMTQ PHSDFRHLVQ PILVYKWFLL bmy_14840T0/1-172 ---------- ---------- ---------- ---------L KRLVYKWFLL 301 350 ENSTTRP00000004277/1-303 IQKVSCTFGA VGYLAIMFTM CGFNLFF-KI KARDSMDFGI MPSFYGLYYG ENSP00000340979/1-328 IYKLSYAFGV VGYLAIMFTM CGFNLFF-KI KARDSMDFGI VSLFYGLYYG ENSBTAP00000025877/1-323 IYKLSYAFGV VGYLAIIFTM CGFHLFF-RI KARDSMDFGI VSLFYGLYYG BACU013584/1-387 IYKVSCAFGA VGYLAIMFKM CGFTLFFNRI KARDSMDFGI VPLFYGLYYG bmy_14840T0/1-172 IYKVSCAFGA VGYLAIMFTM CGFNLFF-KI KARDSMDFGI VPLFYGLYYG 351 400 ENSTTRP00000004277/1-303 VMRIDFAEIC SVYMASTIG- ----FYR--- VSGMPTRSSS DDIGAACGQ- ENSP00000340979/1-328 VMGRDFAEIC SDYMASTIG- ----FYS--- VSRLPTRSLS DNICAVCGQK ENSBTAP00000025877/1-323 VMGRDFAEIC SDYMASTLG- ----FYS--- GSGMPTRSLS DDICAVCGQK BACU013584/1-387 VMGRDFAEIC SDYMASTIGE ALLSFFEIIY VSGMPTRSLS DNICAICGQK bmy_14840T0/1-172 ---------- ---------- ----FYR--- VSGMPTRSLS DNICAICGQK 401 450 ENSTTRP00000004277/1-303 ITVVLNEEGL TENTYQLSCK HVFHEFCIRG -CIVGKKQTC PYCKEKVDLK ENSP00000340979/1-328 IIVELDEEGL IENTYQLSCN HVFHEFCIRG WCIVGKKQTC PYCKEKVDLK ENSBTAP00000025877/1-323 IIVELDEEGL IENTYQLSCK HVFHEFCIRG WCIVGKKQTC PYCKEKVDLK BACU013584/1-387 IIVVLDEEEP IENTYQLSCK H--------- ---------- ------VDDP bmy_14840T0/1-172 IIVVLDEERP IENTYQLSCK HVFHEFCIRG WCIVGKKQTC PYCKEKVDLK 451 500 ENSTTRP00000004277/1-303 RMINNLYLKL LHTHFLYGQI LDW--YLVAW QPVVIGIFQG INYSLGLE ENSP00000340979/1-328 RMISNPWER- --THFLYGQI LDWLRYLVAW QPVVIGIVQG IIYSLGLE ENSBTAP00000025877/1-323 RMINNPWER- --THFLYGQI LDWLRYLVAW QPVVIGIVQG INYSLGLE BACU013584/1-387 KNLEN----- ---------- ---------- ---------- -------- bmy_14840T0/1-172 RMINNPYSR- --KHSVLPNH LFQNNFL--- ---------- --------