KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:27:35 2014 Check: 00 .. Name: ENSTTRP00000010158/1-563 Len: 574 Check: 6004 Weight: 1.00 Name: ENSBTAP00000025911/1-547 Len: 574 Check: 850 Weight: 1.00 Name: ENSP00000385347/1-567 Len: 574 Check: 3244 Weight: 1.00 Name: bmy_21513T0/1-452 Len: 574 Check: 3683 Weight: 1.00 Name: BACU001734/1-306 Len: 574 Check: 3567 Weight: 1.00 // 1 50 ENSTTRP00000010158/1-563 MAGVGYATAQ REGGGGGADI PEREGRGDAE QPGG-GGHGP PPAPQHTETL ENSBTAP00000025911/1-547 ---------- ---------- ----GRGPRG RP---GGGLP GSVAHTVETS ENSP00000385347/1-567 MAGVGDAAAP GEGGGGGVDG PQRDGRGEAE QPGGSGGQGP PPAPQLTETL bmy_21513T0/1-452 ---------- ---------- ---------- ---------- ---------- BACU001734/1-306 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000010158/1-563 GFYESDRRR- ---ERRRSRA ELSLLRFLSA ELTRGYFLEH NEAKYTERRE ENSBTAP00000025911/1-547 GSAEMRQRRV NLHQRNGKQV ELSLFRFLSA ELTRGYFLEH NEAKYTERRE ENSP00000385347/1-567 GFYESDRRR- ---ERRRGRT ELSLLRFLSA ELTRGYFLEH NEAKYTERRE bmy_21513T0/1-452 ---------- ---------- ---------- ---------- ---------- BACU001734/1-306 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000010158/1-563 RVYTCMRIPR ELEKLMVFGI FLCLDAFLYV FTLLPLRVFL ALFRLFTLPC ENSBTAP00000025911/1-547 RVYTCMRIPR ELEKLMVFGI FLCLDAFLYV FTLLPVRVFL ALFRLFTLPC ENSP00000385347/1-567 RVYTCLRIPR ELEKLMVFGI FLCLDAFLYV FTLLPLRVFL ALFRLLTLPC bmy_21513T0/1-452 ---------- -----MVFGI FLCLDAFLYV FTLLPLRVFL ALFRLFTLPC BACU001734/1-306 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000010158/1-563 YGLRDRRLLQ PAQVCDILKG VILVICYFMM HYVDYSMMYH LIRGQSVIKL ENSBTAP00000025911/1-547 YGLRDRRVLQ PAQVCDVLKG VILVICYCMM HYVDYSMMYH LIRGQSVIKL ENSP00000385347/1-567 YGLRDRRLLQ PAQVCDILKG VILVICYFMM HYVDYSMMYH LIRGQSVIKL bmy_21513T0/1-452 YGLRDRRLLQ PAQVCDILKG VILVICYFMM HYVDYSMMYH LIRGQSVIKL BACU001734/1-306 ---------- ---------- --------MM HYVDYSMMYH LIRGQSVIKL 201 250 ENSTTRP00000010158/1-563 YIIYNMLEVA DRLFSSFGQD ILDALYWTAT EPKERKRAHI GVIPHFLMAV ENSBTAP00000025911/1-547 YIIYNMLEVA DRLFSSFGQD ILDALYWTAT EPKERRRAHI GVAPHFFMAV ENSP00000385347/1-567 YIIYNMLEVA DRLFSSFGQD ILDALYWTAT EPKERKRAHI GVIPHFFMAV bmy_21513T0/1-452 YIIYNMLEVA DRLFSSFGQD ILDALYWTAT EPKERKRAHI GVIPHFFMAV BACU001734/1-306 YIIYNMLEVA DRLFSSFGQD ILDALYWTAT EPKERKTAHI GVIPHFFMAV 251 300 ENSTTRP00000010158/1-563 LYVFLHAILI MVQATTLNVA FNSHNKSLLT IMMSNNFVEI KGSVFKKFEK ENSBTAP00000025911/1-547 LYVFLHAILI MVQATTLNVA FNSHNKSLLT IMMSNNFVEI KGSVFKKFEK ENSP00000385347/1-567 LYVFLHAILI MVQATTLNVA FNSHNKSLLT IMMSNNFVEI KGSVFKKFEK bmy_21513T0/1-452 LYVFLHAILI MVQATTLNVA FNSHNKSLLT IMMSNNFVEI KGSVFKKFEK BACU001734/1-306 LYVY------ ---------- ---------- ---------- ---------- 301 350 ENSTTRP00000010158/1-563 NNLFQMSNSD IKERFTNYVL LLIVCLRNME QFSWNPDHLW VL-PDVCMVV ENSBTAP00000025911/1-547 NNLFQMSNSD IKERFTNYVL LLIVCLRNME QFSWNPDHLW VLFPDVCMVV ENSP00000385347/1-567 NNLFQMSNSD IKERFTNYVL LLIVCLRNME QFSWNPDHLW VLFPDVCMVI bmy_21513T0/1-452 NNLFQMSNSD IKERFTNYVL LLIVCLRNME QFSWNPDHLW VLFPDVCMVV BACU001734/1-306 ---------- ---------- ---------- -------HLW VLFPDVCMVV 351 400 ENSTTRP00000010158/1-563 TSEIAVDIVK HAFITKFNDI TADXXXXXXX XXXXXXXXXX XXXAYTDYSD ENSBTAP00000025911/1-547 ASEIAVDIVK HAFITKFNDI TADVYSEYRA SLAFDLVSSR QKNAYTDYSD ENSP00000385347/1-567 ASEIAVDIVK HAFITKFNDI TADVYSEYRA SLAFDLVSSR QKNAYTDYSD bmy_21513T0/1-452 TSEIAVDIVK HAFITKFNDI TADVYSEYRA SLAFDLVSSR QKNAYTDYSD BACU001734/1-306 TSEIAVDIVK HAFITKFNDI TADVYSEYRA SLAFDLVSSR QKNAYTDYSD 401 450 ENSTTRP00000010158/1-563 SVARRMGFIP LPLAVLLIRV VTSSIKVQGI LSYACVILFY FGLISLKVLN ENSBTAP00000025911/1-547 SVARRMGFIP LPLAVLLIRV VTSSVKVQGI LSYACVILFY LGLISLKVLN ENSP00000385347/1-567 SVARRMGFIP LPLAVLLIRV VTSSIKVQGI LSYACVILFY FGLISLKVLN bmy_21513T0/1-452 SVARRMGFIP LPLAVLLIRV VTSSIKVQGI LSYACVILFY FGLISLKVLN BACU001734/1-306 SVARRMGFIP LPLAVLLIRV VTSSIKVQGI LSYACVILFY FGLISLKVLN 451 500 ENSTTRP00000010158/1-563 SIVLLGKSCQ YVKEAKMEEK LFNPPPTSAP SKPSSKSQNK CKPSQ----- ENSBTAP00000025911/1-547 SIVLLGKSCQ YVKEAKMEDK LFNPPPASAP GKPSSKSQNK CKSSQERICF ENSP00000385347/1-567 SIVLLGKSCQ YVKEAKMEEK LSNPPATCTP GKPSSKSQNK CKPSQG---L bmy_21513T0/1-452 SIVLLGKSCQ YVKEAKMEEK LFNPPPTSAP SKPSNKSQNK CKPSQ----- BACU001734/1-306 SIVLLGKSCQ YVKEAKMEEK LFNPPPTSAP SKPSNKSQNK CKPSQ----- 501 550 ENSTTRP00000010158/1-563 STEENLSASV TSQPLHQKEN VIPLLVTSNS DQFLTTPDGD EKDITQENSE ENSBTAP00000025911/1-547 SAEETLSASV TSQPTHQKEN AIPLLVTSSS DQLLTTPDGD EKDITQENSE ENSP00000385347/1-567 STEENLSASI TKQPIHQKEN IIPLLVTSNS DQFLTTPDGD EKDITQDNSE bmy_21513T0/1-452 --EENLSASV TSQPLHQKEN VIPLLVTSNS DQFLTTPDGD EKDITQENSE BACU001734/1-306 --EENLSASV TSQPLHQKEN VIPLLVTSNS DQFLTTPDGD EKDITQENSE 551 600 ENSTTRP00000010158/1-563 LKHRSSKKDL LEIDRFTICG NRID ENSBTAP00000025911/1-547 LKHRSSKKDL LEVDRFTICG NRID ENSP00000385347/1-567 LKHRSSKKDL LEIDRFTICG NRID bmy_21513T0/1-452 LKHRSSKKDL LEIDRFTICG NRID BACU001734/1-306 LKHRSSKKDL LEIDRFTICG NRID