KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:27:35 2014 Check: 00 .. Name: ENSP00000251089/1-670 Len: 688 Check: 7000 Weight: 1.00 Name: ENSBTAP00000025915/1-668 Len: 688 Check: 4539 Weight: 1.00 Name: ENSTTRP00000012546/1-667 Len: 688 Check: 6059 Weight: 1.00 Name: BACU010835/1-638 Len: 688 Check: 1629 Weight: 1.00 Name: bmy_03500T0/1-536 Len: 688 Check: 6410 Weight: 1.00 // 1 50 ENSP00000251089/1-670 MIASCLCYLL LPATRLFRAL SDAFFTCRKN VLLANSSSPQ VEGDFAMAPR ENSBTAP00000025915/1-668 MIASCLCYLL LPAARLFRAL SDAFFTCRKN VLLAKSSSSQ VEGNFAMAPR ENSTTRP00000012546/1-667 MIASCLCYLL LPAARLFRAL SDAFFTCRKN AFLAKSSSPQ VDGDFAMAPR BACU010835/1-638 ---------- ---------- ---------- ---------- ------MAPR bmy_03500T0/1-536 MIASCLCYVL LPAVRLFRAL SDAFFTCRKN ALLAKSSSPQ VDGDFAMAPR 51 100 ENSP00000251089/1-670 GPEQEECEGL LQQWREEGLS QVLSTASEGP LIDKGLAQSS LALLMDNPGE ENSBTAP00000025915/1-668 GPDQEECEGL LQQWREEGSS QVLSTVSDGP LVDKGLAESS LALLMDNPGE ENSTTRP00000012546/1-667 GPDQEECEGL LQQWQEEGSS QALSTVSEGL LVDKGVAESS LAHLMDNPGE BACU010835/1-638 GPDQEECEGL LQQWQEEGSS QALSTVSEGL LVDKGVAQSS LALLMDHPGE bmy_03500T0/1-536 GPDQEECEGL LQQWQEEGSS QALSTVSEGL LVDKGVAQSS LALLMDHPGE 101 150 ENSP00000251089/1-670 ENAASEDRWS SRQLSDLRAA ENLDEPFPEM LG-EEPLLEV EGVEGSMWAA ENSBTAP00000025915/1-668 QDAAPEDTWS SRQLSDLRAA ENLEEPFPEV LGEEEPLPE- --VEGPMWAA ENSTTRP00000012546/1-667 QDAASEDKWS SRQLSDLWAA ENLEESFPEV LG-EEPLPE- --VEGPMWAE BACU010835/1-638 HDAAAEDKWS SRQLSDLRAA ENLEEPFPEV LG-EEPLPE- --VEGPMWAA bmy_03500T0/1-536 HDAAPEDKWS SRQLSDLRAA ENLEEPFPEV LG-EEPLPE- --AEGPMWAA 151 200 ENSP00000251089/1-670 IPMQSEPQYA DCAALPVGAL ATEQWEEDPA VLAWSIAPEP VPQEEASIWP ENSBTAP00000025915/1-668 VPVQTGRQYT DCAVLPMGAL ATEQWDEDPA VVAWSIAPEP VPQEEAPVWP ENSTTRP00000012546/1-667 VPVQTGPQYA DCAVLPVGAL AAEQWEEDPA VVAWSIAPEP VPQEEAPIWS BACU010835/1-638 VPVQTGPQYA DCAVLSVGAL AAEQWEEDPA VVAWSIAPEP VPQEETPIWP bmy_03500T0/1-536 VPVQTGPQYA DCAVLSVRAL AAEQWEEDPA VVAWSIAPES VPQEEAPIWP 201 250 ENSP00000251089/1-670 FEGLGQLQPP AVEIPYHEIL WREWEDFSTQ PDAQGLKAGD GPQFQFTLMS ENSBTAP00000025915/1-668 FEGLGQLQPP PVEIPYHEIL WREWEDFSTQ PDVQGLEAGD GPQFQFTLMS ENSTTRP00000012546/1-667 FEGLGQLQPP PVEIPYHEIL WREWEDFSTQ PDAQGLEAGD GPQFQFTLMS BACU010835/1-638 FEGLGQLQSP PVEIPYHEIL WREWEDFSTQ PDAQGLEAGD GPQFQFTLMS bmy_03500T0/1-536 FEGLGQLQSP PVDIPYHEIL WRDWEDFSTQ PDAQGLEAGD GPQFQFTLMS 251 300 ENSP00000251089/1-670 YNILAQDLMQ QSSELYLHCH PDILNWNYRF VNLMQEFQHW DPDILCLQEV ENSBTAP00000025915/1-668 YNILAQDLMQ QSSELYLHCH PDILNWSYRF ANLMQEFQHW DPDILCLQEV ENSTTRP00000012546/1-667 YNILAQDLMQ QSSELYLHCH PDILSWNYRF ANLMQEFQHW DPDILCLQEV BACU010835/1-638 YNILAQDLMQ QSSELYLHCH PDILSWNYRF ANLMQEFQHW DPDILCLQEV bmy_03500T0/1-536 YNILAQDLMQ QSSELYVHCH PDILSWNYRF ANLMQEFQHW DPDILCLQEV 301 350 ENSP00000251089/1-670 QEDHYWEQLE PSLRMMGFTC FYKRRTGCKT DGCAVCYKPT RFRLLCASPV ENSBTAP00000025915/1-668 QEDHYWEQLE PSLRMMGFTC FYKRRTGCKT DGCAVCYKPT RFRLLCASPV ENSTTRP00000012546/1-667 QEDHYWQQLE PSLRMMGFTC FYKRRTGCKT DGCAVCYKPT RFRLLCASPV BACU010835/1-638 QEDHYWEQLE PSLRMMGFTC FYKRRTGCKT DGCAVCYKPM RFRLLCASPV bmy_03500T0/1-536 QEDHYWEQLE PSLRMMGFTC FYKRRTGCKT DGCAVCYKPT RFRLLCASPV 351 400 ENSP00000251089/1-670 EYFRPGLELL NRDNVGLVLL LQPLVPEGLG QVSVAPLCVA NTHILYNPRR ENSBTAP00000025915/1-668 EYFRPGLELL NRDNVGLVLL LQPLVPEGLG QVSVAPLCVA NTHVLYNPRR ENSTTRP00000012546/1-667 EYFRPGLELL NRDNVGLVLL LQPLVPEGLG QVSVAPLCVA NTHVLYNPRR BACU010835/1-638 EYFRPGLELL NRDNVGLVLL LQPLVPEGLG PVSVAPLCVA NTHVLYNPRR bmy_03500T0/1-536 EYFRPGLELL NRDNVGLVLL LQPLVPEGLG PVSVAPLCVA NTHVLYNPRR 401 450 ENSP00000251089/1-670 GDVKLAQMAI LLAEVDKVAR LSDGSHCPII LCGDLNSVPD SPLYNFIRDG ENSBTAP00000025915/1-668 GDVKLAQMAI LLAEVDKVAR LSDGSHCPIV LCGDLNSVPD SPLYNFIRDG ENSTTRP00000012546/1-667 GDVKLAQMAI FLAEVDKVAR LSDGSHCPII LCGDLNSVPD SPLYNFIRDG BACU010835/1-638 GDIKLAQMAI FLAEVDKVAR LSDGSHCPII LCGDLNSVPD SPLYNFIRDG bmy_03500T0/1-536 GDVKLAQMAI FLAEVDKVAR LSDGSHCPII LCGDLNSVPD SPLYNFIRDG 451 500 ENSP00000251089/1-670 ELQYHGMPAW KVSGQEDFSH QLYQRKLQAP LWPSSLGITD CCQYVTSCHP ENSBTAP00000025915/1-668 ELQYHGMPAW KVSGQEDFSH QLYQRKLQAP LWPSSLGITD YCQYVTSCHP ENSTTRP00000012546/1-667 ELQYHGMPAW KVSGQEDFSH QLYQRKLQAP LWPSSLGITD CCQYVTSCHP BACU010835/1-638 ELQYHGMPAW KVSGQEDFSH QLYQRKLQAP LWPSSLGITD CCQYVTFCHP bmy_03500T0/1-536 ELQYHGMPAW KVSGQEDFSH QLYQRKLQAP LWPSSLGITD CCQYVTSCHP 501 550 ENSP00000251089/1-670 KRSERRKYGR DFLLRFRFCS IACQRPVGLV LMEGVTDTKP ERPAGWAESV ENSBTAP00000025915/1-668 TSSERRKYSR DFLLRFRFCS MACRRPVGLV LLEGVTDTKP ERPAGWAESV ENSTTRP00000012546/1-667 KRSEKRKYSR DFLLRFRFCS IACQRPVGLV LMEGVTDTKP ERPAGWAEPV BACU010835/1-638 KRSERRKYSR DFLLRFRFCN VACQRPVGLV LMEGVTDIKP ERPAGWVESV bmy_03500T0/1-536 KRSERRKYSR DFLLRFRFCS IACQRPVGLV LMEGVTDTKP ---------- 551 600 ENSP00000251089/1-670 LEEDASELEP AFSRTVGTIQ HCLHLTSVYT HFLPQRGRPE VTTMPLGLGM ENSBTAP00000025915/1-668 IEEDTSESEP DVPRTAGTIQ HCLHLTSVYT HFLPQHGRPE VTTMPLGLGT ENSTTRP00000012546/1-667 IEEDISEPEP DFPRTVGTIQ HCLHLTSVYT HFLPQHGRPE VTTMPLGLGM BACU010835/1-638 VEEDISEPEP DFPRTVGTIQ HCLHLTSVYT HFLPQHGRPE VTTMPLGLGM bmy_03500T0/1-536 ---------- ---------- ---------- ---------- ---------- 601 650 ENSP00000251089/1-670 TVDYIFFSA- ESCENGNRTD HRLYRDGTLK LLGRLSLLSE EILWAANGLP ENSBTAP00000025915/1-668 TVDYIFFSA- ESCENGNRTD RRLYQDGTLK LLGRLSLLSE EILWAANGLP ENSTTRP00000012546/1-667 TVDYIFFSA- ESCKNGNRTD RRLCHDGTLK LLGRLSLLSE EILWAANGLP BACU010835/1-638 TVDYIFFSAS ESCENGNRTG VHPANQGILI VRALVTSGPH ELEQQIQGCP bmy_03500T0/1-536 ---------- ---------- ---------- ---------- ---------- 651 700 ENSP00000251089/1-670 NPFCSSDH-- ---------- -LCLLASFGM EVTAP--- ENSBTAP00000025915/1-668 NPFCSSDH-- ---------- -LCLLASFGM EIAAP--- ENSTTRP00000012546/1-667 NPFCSSDH-- ---------- -LCLLASFEM EVTAL--- BACU010835/1-638 RPRAPHRPGM LPLGLIPFPR LPCGRPKFEA LCGVSGQG bmy_03500T0/1-536 ---------- ---------- ---------- --------