KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:27:37 2014 Check: 00 .. Name: ENSP00000315118/1-544 Len: 616 Check: 376 Weight: 1.00 Name: ENSBTAP00000025929/1-523 Len: 616 Check: 6418 Weight: 1.00 Name: bmy_11295T0/1-494 Len: 616 Check: 3810 Weight: 1.00 Name: ENSTTRP00000006792/1-541 Len: 616 Check: 3959 Weight: 1.00 Name: BACU001442/1-594 Len: 616 Check: 9825 Weight: 1.00 // 1 50 ENSP00000315118/1-544 --MWLKVGGL LRGTGGQLGQ TVGWPCGALG PGPHRWGPCG GSWAQKFYQD ENSBTAP00000025929/1-523 --MWQEVGGL LRATCGQLGR TIGRPCGALG PGPRCWGPCG DFWAQKLHHD bmy_11295T0/1-494 MTMWLEVGGL LRGTCGRWGR TTGLPCGALG TGPLCWGPSG GPWTQNLHQD ENSTTRP00000006792/1-541 --MWLEVGGL LRGTCGQWGR TTGRPCGALG LGPLCWGPCG GPWTQKLHQD BACU001442/1-594 --MWLEVGGL LRGTCGRWGR TTGLPCGALG PGLLCWGPCG GPWTQKLHQD 51 100 ENSP00000315118/1-544 GPGRGLGEED IRRAREARPR KTPRPQLSDR SRERKVPASR ISRLANFGGL ENSBTAP00000025929/1-523 GPGRGLGEED IRKAREARIR KTPRPQLSDR SRERKVPASR ISRLANFGGL bmy_11295T0/1-494 GPGRGLGEED IRKAREARIR KAPRPQLSDR SRERKVPTSR VSRLANFGG- ENSTTRP00000006792/1-541 GPGRGLGEED IRKAREARIR KTARPQLSDR SRERKVPTSR ISRLANFGGL BACU001442/1-594 GPGRGLGEED IRKAREARIR KAPRPQLSDR SRERKVPTSR VSRLANFGGL 101 150 ENSP00000315118/1-544 AVGLGLGVLA EMAKKSMPGG RLQSEGGSGL DSSPFLSEAN AERIVQTLCT ENSBTAP00000025929/1-523 AVSLGLGALA EVAKKSLLGG GVQSEGGSQP GSSLFLSEAN AERIVQTLCT bmy_11295T0/1-494 ---------- ---SSTLP-- -------HLP PSPNFRD--- ---------S ENSTTRP00000006792/1-541 AVSLGLGALA EMAKKSLPGG RVQSEGGSRP GSSIFLSEAN AERIVQTLCT BACU001442/1-594 AVSLGLGALA EVVKKSLPGG RVQSEGGSRP GSSLFLSEAN AERIVQTLCT 151 200 ENSP00000315118/1-544 VRGAALKVGQ MLSI------ ---------- ---------- ---------Q ENSBTAP00000025929/1-523 VRGAALKVGQ MLSI------ ---------- ---------- ---------Q bmy_11295T0/1-494 HRG------- ---------- ---------- ----PPGLSP HRFPLPDVSQ ENSTTRP00000006792/1-541 VRGAALKVGQ MLSI------ ---------- ---------- ---------Q BACU001442/1-594 VRGAALKLGQ MLSIQVPPYP TYHQAPTSET PTGAPPGLSP HRFPLPDVSQ 201 250 ENSP00000315118/1-544 DNSFISPQLQ HIFERVRQSA DFMPRWQMLR VLEEELGRDW -QAKVASLEE ENSBTAP00000025929/1-523 DNSFISPQLQ RIFERVRQSA DFMPRWQML- -VSAPSGKGW SQGSVWAVKE bmy_11295T0/1-494 DNSFISPQLQ HIFERVRQSA DFMPRWQMLR VLEEELGREW -QAKVASLEE ENSTTRP00000006792/1-541 DNSFISPQLQ RIFERVRQSA DFMPRWQMQR VLEEELGRDW -QAKVASLEE BACU001442/1-594 DNSFISPQLQ RIFERVRQSA DFMPRWQMLR VLEEELGKEW -QAKVASLEE 251 300 ENSP00000315118/1-544 VPFAAASIGQ VHQGLLRDGT EVAVKIQYPG IAQSIQSDVQ NLLAVLKMSA ENSBTAP00000025929/1-523 AVKHCASIGQ VHQGVLRDGT EVAVKIQYPG VAQSIQSDVQ NLLAVLKMSV bmy_11295T0/1-494 VPFAAASIGQ VHQGVLRDGT EVAVKIQYPG VAQSIQSDIQ NLLAVLKMSV ENSTTRP00000006792/1-541 VPFAAASIGQ VHQGVLRDGT EVAVKIQYPG VAQSIQSDIQ NLLAVLKMSV BACU001442/1-594 VPFAAASIGQ VHQGVLRDGT EVAVKIQYPG VAQSIQSDIQ NLLAVLKMSV 301 350 ENSP00000315118/1-544 ALPAGLFAEQ SLQALQQELA WECDYRREAA CAQNF----- ---------- ENSBTAP00000025929/1-523 ALPEGLFAEQ SLQALQRELA WECDYRREAA CAQNF----- ---------- bmy_11295T0/1-494 ALPEGLFAEQ SLQVLQRELA WECDYRREAA CAQNFSRALP YEERIKHQRF ENSTTRP00000006792/1-541 AVPEGLFAEQ SLQALQRELA LECDYRREAA CAQNF----- ---------- BACU001442/1-594 ALPEGLFAEQ SLQVLQRELA WECDYRREAA CAQNFSRALP FEERIKHQRF 351 400 ENSP00000315118/1-544 ---------- ---------R QLLANDPFFR VPAVVKELCT TRVLGMELAG ENSBTAP00000025929/1-523 ---------- ---------R QLLADDPFFR VPAVIQELCT TRVLGMELAG bmy_11295T0/1-494 DKQGQKYKPP KRDLEMESVR QLLADDPFFR VPAVIQELCT XRVLGMELAG ENSTTRP00000006792/1-541 ---------- ---------R QLLADDPFFR VPAVIQELCT TRVLGMELAG BACU001442/1-594 DKQGQKYKPP KRDLEMESVR QLLADDPFFR VPAIIQELCT TRVLGMELAG 401 450 ENSP00000315118/1-544 GVPLDQCQGL SQDLRNQICF QLLTLCLREL FEFRFMQTDP NWANFLYDAS ENSBTAP00000025929/1-523 GVPLDQCQGL SQDIRNQICF QLLRLCLREL FEFRFMQTDP NWANFLYDAS bmy_11295T0/1-494 GVPLDQCQGL SQDIRN---- ---------- ---------- ---------- ENSTTRP00000006792/1-541 GVPLDQCQGL SQDIRNQICF QLLRLCLREL FEFRFMQTDP NWANFLYDAS BACU001442/1-594 GVPLDQCQGL SQDIRNQICF QLLRLCLREL FEFRFMQTDP NWANFLYDAS 451 500 ENSP00000315118/1-544 SHQVTLLDFG ASREFGTEFT DHYIEVVKAA ADGDRDCVLQ KSRDLKFLTG ENSBTAP00000025929/1-523 SHQVTLLDFG ASREFGTEFT DHYIEVVMAA ANGDKDRVLQ KSRDLKFLTG bmy_11295T0/1-494 --QVILLDFG ASREFGTEFT DHYIEVVMAA ANGDRDRVLQ KSRDLKFLTG ENSTTRP00000006792/1-541 SHQVILLDFG ASREFGTEFT DHYIEVVMAA ANGDRDRVLQ KSRDLKFLTG BACU001442/1-594 SHQVILLDFG SSRAFGTEFT DHYIEVVMAA ANGDRDRVLQ KSRDLKFLTG 501 550 ENSP00000315118/1-544 FETKAFSDAH VEAVMILGEP FATQGPYDFG SGETARRIQD LIPVLLRHRL ENSBTAP00000025929/1-523 FETKAFSDAH VEAVMILGEP FATQGPYDFG AGDTARRVQG LIPVLLRHRL bmy_11295T0/1-494 FETKAFSDAH VEAVMILGEP FATQGLYDFG AGDTARRVQG LIPVLLQHRL ENSTTRP00000006792/1-541 FETKAFSDAH VEAVMILGEP FATQGPYDFG AGDTARRVQG LIPVLLQHRL BACU001442/1-594 FETKAFSDAH VEAVMILGEP FATQGPYDFG AGDTACRVQG LIPVLLQHRL 551 600 ENSP00000315118/1-544 CPPPEETYAL HRKLAGAFLA CAHLRAHIAC RDLFQDTYHR YWASRQPDAA ENSBTAP00000025929/1-523 RPPPEETYAL HRKLAGAFLA CARLRAQIAC RDLFQDTYHR YWASRQ---- bmy_11295T0/1-494 RPPPEETYAL HRKLAGAFLA CARLHAHIAC RDLFQDTYHR YWASRQ---A ENSTTRP00000006792/1-541 RPPPEETYAL HRKLAGAFLA CARLHAHIAC QDLFQDTYHR YWASRQ---A BACU001442/1-594 RPPPEETYAL HRKLAGAFLA CARLHAHIAC RDLFQDTYHR YWASRQ---A 601 650 ENSP00000315118/1-544 TAGSLPTKGD SWVDPS ENSBTAP00000025929/1-523 ---------- ------ bmy_11295T0/1-494 ---------- ------ ENSTTRP00000006792/1-541 ATARSLLTRD VCSDPS BACU001442/1-594 ---------- ------