KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:27:38 2014 Check: 00 .. Name: ENSTTRP00000006794/1-675 Len: 694 Check: 6222 Weight: 1.00 Name: ENSP00000263370/1-683 Len: 694 Check: 5510 Weight: 1.00 Name: ENSBTAP00000025930/1-675 Len: 694 Check: 3893 Weight: 1.00 Name: bmy_11296T0/1-645 Len: 694 Check: 336 Weight: 1.00 Name: BACU019278/1-621 Len: 694 Check: 4886 Weight: 1.00 // 1 50 ENSTTRP00000006794/1-675 MRRCPCRGNL SEAEAGALPG TARMGLAATR GGRRRQPGQQ RPGPGAGGPA ENSP00000263370/1-683 MRRCPCRGSL NEAEAGALPA AARMGLEAPR GGRRRQPGQQ RPGPGAGAPA ENSBTAP00000025930/1-675 MRRCPCRGSL SEAEAQALPA AARMGLAAPR GGRRRQPGQQ RPGPGAGGPV bmy_11296T0/1-645 MRRCPCRGNL SEAEAGALPG TARMGLAAPR GGRRRQPGQQ RPGPGAGGPA BACU019278/1-621 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000006794/1-675 GRPERGGTRA RTEESNLHTE PERAGLGPES G--------- TDGQAEPEAA ENSP00000263370/1-683 GRPEGGGPWA RTEGSSLHSE PERAGLGPAP GTESPQAEFW TDGQTEPAAA ENSBTAP00000025930/1-675 GRPEGGGPRA RTEESNRHTE PERASLGLES G--------- ADGRAEPEAA bmy_11296T0/1-645 GRPERGGPRA RTEESNLHIE PERAGLGPES G--------- TDGQAEPEAA BACU019278/1-621 ---------- ----XNLHIE PERAGLGPES G--------- TGGQAEPEVA 101 150 ENSTTRP00000006794/1-675 GSGAGTERPS QKTEPGRSIL RTHPERSSHW SELETAGDWT ETRTDGFWTD ENSP00000263370/1-683 GLGVETERPK QKTEPDRSSL RTHLEWS--W SELETTCLWT ETGTDGLWTD ENSBTAP00000025930/1-675 GLGAETERPN PTTEPGKSIL RTHLGGSSHW SELETAGDWT ETGTDGFWAD bmy_11296T0/1-645 GSGAGTERPS QKTEPGRSIL CTHPERSSHW SELETAGDWT ETRTDGFWTD BACU019278/1-621 GSGAGTERPS QKTEPGRSIL RTHPERSSHW SELETAGDWT ETRTDGFWTD 151 200 ENSTTRP00000006794/1-675 PHRSDLQCQP ERANLWAQQG VDGPWAELEI HGSQTQPERA KPRADNLWTH ENSP00000263370/1-683 PHRSDLQFQP EEASPWTQPG VHGPWTELET HGSQTQPERV KSWADNLWTH ENSBTAP00000025930/1-675 PHRTDLQSQP QRTNLWAQPG VDGPWTELEK YGSQTQSERA KPRADNL-CT bmy_11296T0/1-645 PHRSDLQCQP ERANLWAQQG VDGPWVELEI HGSQTQPERA KPRADNLWTH BACU019278/1-621 PHRSDLQRQP ERANLWAQQG VDGPWVELEI HGSQTQPERA KPRGDNLWTH 201 250 ENSTTRP00000006794/1-675 QNRSSIRTQP EGASLSTEPN ADGSRKELYT DGSRTQPDTK DPWIEQHIDG ENSP00000263370/1-683 QNSSSLQTHP EGACPSKEPS ADGSWKELYT DGSRTQQDIE GPWTEPYTDG ENSBTAP00000025930/1-675 QNRSSVRTQP EGVPLSTERS ADSSWKQPFT EGSRTQKGTE DSWTELHTDG bmy_11296T0/1-645 QNRSSVRTQP EGASLSTEPN ADGSWKELYT DGSRTQQDTK DPWTEQHIDG BACU019278/1-621 QNRSSVRTQP EGASLSTEPN ADGSWKELYT DGSRTQQDTK DPWTEQHIDG 251 300 ENSTTRP00000006794/1-675 SQIQQDTETT WKQLDIDGFP AQQDTDGFWP QPGTD----- ---GPQTXXX ENSP00000263370/1-683 SQKKQDTEAA RKQPGTGGFQ IQQDTDGSWT QPSTD----- ---GSQTAPG ENSBTAP00000025930/1-675 SQIQQDTETA WKQLDPGGFP T-QDTDGLWS QPGTD----- ---GPQTEPR bmy_11296T0/1-645 SQIQQDTETA WKQLDIDGFP TQQDTDGFWP QPGTDGPQTQ DTHGPQTEPG BACU019278/1-621 SQIQQDTETA WKQLDIDGFP TQQDTDGFWP QPGTDGPQTQ DTHGPQTEPG 301 350 ENSTTRP00000006794/1-675 XXXXXXXXXX XXXXXXXXXX XXXXX-XXXX XXXXXXXXXX XXXXXXXXXX ENSP00000263370/1-683 TDCLLGEP-E DGPLEEPEPG ELLTHLYSHL KCSPLCPVPR LIITPETPEP ENSBTAP00000025930/1-675 TDCLLGEPNQ DDSLEEPEHR ELVTHLYSHL EGSTLTPVPR LIITPETPEP bmy_11296T0/1-645 TDCLLGEPNQ DGSLEEPEHG ELVTHLYSHQ ECCPLTPVPR LIITPETPEP BACU019278/1-621 TDCLLGEPNQ DGSLEEPEHG ELVTHLYSHQ ECCPLTPVPR LIITPETPEP 351 400 ENSTTRP00000006794/1-675 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXGGGGSSD PEDRFGNKPW ENSP00000263370/1-683 EAQPVGPPSR VEGGSGGFSS ASSFDESEDD VVAGGGGASD PEDRSGSKPW ENSBTAP00000025930/1-675 EARPGGPPSQ LEAGSGGFSS ASSFDESEDD VVAGGGGASD PEDRSGNKPW bmy_11296T0/1-645 EAQPVGPPSQ IEGGSGGFSS ASSFDESEDD VVAGGGGSSD PEDRSGNKPW BACU019278/1-621 EAQPVGPPSQ IEGGSGGFSS ASSFDESEDD VVAGGGGSSD PEDRSGNKPW 401 450 ENSTTRP00000006794/1-675 KKLKTVLKYS PFMVSFRKHY PWVQLSGHSG NFQAGEDGWI LKRFCQYEQR ENSP00000263370/1-683 KKLKTVLKYS PFVVSFRKHY PWVQLSGHAG NFQAGEDGRI LKRFCQCEQR ENSBTAP00000025930/1-675 KKLKTVLKYS PFVVSFRKHY PWVQLSGHSG NFQAGEDGWI LKRFCQYEQR bmy_11296T0/1-645 KKLKTVLKYS PFMVSFRKHY PWVQLSGHSG NFQAGEDGWI LKRFCQYEQR BACU019278/1-621 KKLKTVLKYS PFMVSFRKHY PWVQLSGHSG NFQAGEDGWI LKRFCQYEQR 451 500 ENSTTRP00000006794/1-675 SLEQLMRDPL RPFVPAYYGM VQQDGQAFNQ MEDLLADFEN PSIMDCKMGS ENSP00000263370/1-683 SLEQLMKDPL RPFVPAYYGM VLQDGQTFNQ MEDLLADFEG PSIMDCKMGS ENSBTAP00000025930/1-675 SLEQLMRDPL RPFVPAYYGV VQRDGQTFNQ MEDLLADFEN PSIMDCKMGS bmy_11296T0/1-645 SLERLMRDPL RPFVPAYYGM ---------- ---------- ---------- BACU019278/1-621 SLEQLMRDPL RPFVPAYYGM VQQDGQAFNQ MEDLLADFEN PSIMDCKMGS 501 550 ENSTTRP00000006794/1-675 RTYLEEELVK ARERPRPRKD MYEKMVAVDP GAPTPEEHAQ GAVTKPRYMQ ENSP00000263370/1-683 RTYLEEELVK ARERPRPRKD MYEKMVAVDP GAPTPEEHAQ GAVTKPRYMQ ENSBTAP00000025930/1-675 RTYLEEELVK ARERPRPRKD MYEKMVAVDP GAPTPEEHAQ CAVTKPRYMQ bmy_11296T0/1-645 ---------- ARERPRPRKD MYEKMVAVDP GAPTPEEHAQ GAVTKPRYMQ BACU019278/1-621 RTYLEEELVK ARERPRPRKD MYEKMVAVDP GAPTPEEHAQ GAVTKPRYMQ 551 600 ENSTTRP00000006794/1-675 WRETVSSTST LGFRIEGIKK ADGT-NTNFK KMRKLEEVTK MLEDFVDGNR ENSP00000263370/1-683 WRETMSSTST LGFRIEGIKK ADGTCNTNFK KTQALEQVTK VLEDFVDGDH ENSBTAP00000025930/1-675 WRETVSSTST LGFRIEGIKK ADGTCNTNFK KTQKLEQVTK VLEDFVDGNH bmy_11296T0/1-645 WRETLSSTST LGFRIEGIKK ADGTCNTNFK KTRKLEEVTK VLEDFVDGNR BACU019278/1-621 WRETLSSTST LGFRIEGIKK ADGTCNTNFK KTRKLEEVTK VLEDFVDGNR 601 650 ENSTTRP00000006794/1-675 GILKKYVARL EELREALENS PFFKTHEVVG SSLLFVHDYT GLAKVWMIDF ENSP00000263370/1-683 VILQKYVACL EELREALEIS PFFKTHEVVG SSLLFVHDHT GLAKVWMIDF ENSBTAP00000025930/1-675 TILRKYVARL EELREALESS PFFRTHEVVG SSLLFVHDHT GLAKVWMIDF bmy_11296T0/1-645 AILKKYVARL EELREALENS PFFKTHEVVG SSLLFVHDHT GLAKVWMIDF BACU019278/1-621 AILKKYVARL EELREALENS PFFKTHEVVG SSLLFVHDHT GLANVWMIDF 651 700 ENSTTRP00000006794/1-675 GKTVALPDHQ TLSHRLPWAE GNREDGYLWG LDNVIHLLQG LAYS ENSP00000263370/1-683 GKTVALPDHQ TLSHRLPWAE GNREDGYLWG LDNMICLLQG LAQS ENSBTAP00000025930/1-675 GKTVALPDHQ TLSHRLPWVE GNREDGYLWG LDNMICLLQG LAQS bmy_11296T0/1-645 GKTVALPDHQ TLSHRLPWAE GNREDGYLWG LDNVIRLLQG LAHS BACU019278/1-621 GKTVALPDHQ TLSHRLPWAE GNREDGYLWG LDNVIRLLQG LAHS