KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:27:41 2014 Check: 00 .. Name: ENSP00000277575/1-845 Len: 855 Check: 2539 Weight: 1.00 Name: ENSBTAP00000025957/1-831 Len: 855 Check: 2366 Weight: 1.00 Name: ENSTTRP00000002009/1-829 Len: 855 Check: 614 Weight: 1.00 Name: BACU001756/1-721 Len: 855 Check: 5510 Weight: 1.00 Name: bmy_16937T0/1-752 Len: 855 Check: 7763 Weight: 1.00 // 1 50 ENSP00000277575/1-845 MRTEAVVNSQ GQTDYLTKDS DQDVALKLAQ ERAEIVAKYD RGREGAEIEP ENSBTAP00000025957/1-831 MRTEAVVNSQ GQTGYLTKDS NQDVALKLAQ ERAEIVAKYD RGREGAEIEP ENSTTRP00000002009/1-829 ---------- -------MDS NQDVAIKLAQ ERAEIVAKYD RGREGAEIEP BACU001756/1-721 ---------- ---------- ---------- ---------- -GREGAEIEP bmy_16937T0/1-752 ---------- ---------- ---------- ---------- ------MLKG 51 100 ENSP00000277575/1-845 WEDADYLVYK VTDRFGFLHE EELPDHNVAV ERQKHLEIER TTKWLKMLKG ENSBTAP00000025957/1-831 WEDADYLVYK VTDRFGFLHE EELPYHNAAM ERQKHLEIER TTKWLKMLKG ENSTTRP00000002009/1-829 WEDADYLVYK VTDRFGFLHE EELPYHNAAM ERQKHLEIER TTKWLKMLKG BACU001756/1-721 WEDADYLVYK VTDR------ ---------- ---------- ---------- bmy_16937T0/1-752 WE-------- ---------- ---------- ---------- ---------- 101 150 ENSP00000277575/1-845 WEKYKNTEKF HRRIYKGIPL QLRGEVWALL LEIPKMKEET RDLYSKLKHR ENSBTAP00000025957/1-831 WEKYKNTEKF HRRIYKGIPL QLRGEVWALL LEIPKMKEET RDLYSKLKHR ENSTTRP00000002009/1-829 WEKYKNTEKF HRRIYKGIPL QLRGEVWALL LEIPKMKEET RDLYSKLKHR BACU001756/1-721 ---------F G--------- ---------F LHEEELPYHN AAMERKLKHR bmy_16937T0/1-752 --KYKNTEKF HRRIYKGIPL QLRGEVWALL LEIPKMKEET RDLYSKLKHR 151 200 ENSP00000277575/1-845 ARGCSPDIRQ IDLDVNRTFR DHIMFRDRYG VKQQSLFHVL AAYSIYNTEV ENSBTAP00000025957/1-831 ARGCSPDIRQ IDLDVNRTFR DHIMFRDRYG VKQQSLFHVL AAYSIYNTEV ENSTTRP00000002009/1-829 ARGCSPDIRQ IDLDVNRTFR DHIMFRDRYG VKQQSLFHVL AAYSIYNTEV BACU001756/1-721 ARGCSPDIRQ IDLDVNRTFR DHIMFRDRYG VKQQSLFHVL AAYSIYNTEV bmy_16937T0/1-752 ARGCSPDIRQ IDLDVNRTFR DHIMFRDRYG VKQQSLFHVL AAYSIYNTEV 201 250 ENSP00000277575/1-845 GYCQGMSQIT ALLLMYMNEE DAFWALVKLF SGPKHAMHGF FVQGFPKLLR ENSBTAP00000025957/1-831 GYCQGMSQIT ALLLMYMNEE DAFWALVKLF SGPKHAMHGF FVHGFPKLLR ENSTTRP00000002009/1-829 GYCQGMSQIT ALLLMYMNEE DAFWALVKLF SGPKHAMHGF FVHGFPKLLR BACU001756/1-721 GYCQGMSQIT ALLLMYMNEE DAFWALVKLF SGPKHAMHGF FVHGFPKLLR bmy_16937T0/1-752 GYCQGMSQIT ALLLMYMNEE DAFWALVKLF SGPKHAMHGF FVHGFPKLLR 251 300 ENSP00000277575/1-845 FQEHHEKILN KFLSKLKQHL DSQEIYTSFY TMKWFFQCFL DRTPFTLNLR ENSBTAP00000025957/1-831 FQEHHEKILN KFLSKLKQHL DSQEVYTSFY TMKWFFQCFL DRTPFTLNLR ENSTTRP00000002009/1-829 FQEHHEKILN KFLSKLKQHL DSQEIYTSFY TMKWFFQCFL DRTPFTLNLR BACU001756/1-721 FQEHHEKILN KFLSKLKQHL ---------- ---------- --TPFTLNLR bmy_16937T0/1-752 FQEHHEKILN KFLSKLKQHL DSQEIYTSFY TMKWFFQCFL DRTPFTLNLR 301 350 ENSP00000277575/1-845 IWDIYIFEGE RVLTAMSYTI LKLHKKHLMK LSMEELVEFF QETLAKDFFF ENSBTAP00000025957/1-831 IWDIYIFEGE RVLTAMSYTI LKLHRKHLMR LSMEELVEFL QETLAKDFFF ENSTTRP00000002009/1-829 IWDIYIFEGE RILTAMSYTI LKLHRKHLMK LSMEELVEFL QETLAKDFFF BACU001756/1-721 IWDIYIFEGE RILTAMSYTI LKLHRKHLMK LSMEELVEFL QETLAKDFFF bmy_16937T0/1-752 IWDIYIFEGE RILTAMSYTI LKLHRKHLMK LSMEELVEFL QETLAKDFFF 351 400 ENSP00000277575/1-845 EDDFVIEQLQ ISMTELKRAK LDLPEPGKED EYPKKPLGQL PPELQSWGVH ENSBTAP00000025957/1-831 EDDFVIEQLQ ISMAELKRAK LDLPEPGKED EFPKKPLGQL PPEGQSAGVT ENSTTRP00000002009/1-829 EDDFVIEQLQ ISMVELKRAK LDLPEPGKED EFPKKPLGQL PPESQSAGVS BACU001756/1-721 EDDFVIEQLQ ISMVELKRAK LDLPEPGKED EFPKKPLGQL PPESQSAGIS bmy_16937T0/1-752 EDDFVIEQLQ ISMVELKRAK LDLPEPGKED EFPKKPLGQL PPESQSAGVS 401 450 ENSP00000277575/1-845 HLSNGQRSVG RPSPLASGRR ESG-APHRRH EHSPHPQSRT GTPERAQPPR ENSBTAP00000025957/1-831 HLSNGQRSVG RSSPHPGGRR GSG-SPHKIH EPSPPHPRRT GTPERARQQR ENSTTRP00000002009/1-829 HLSNGQRSVG RSSPHLDGRR ESGSSPYKAH EHSPPHQSRT GTPERARQLR BACU001756/1-721 HLSNGQRSVG RSSPHPEGRR ESGSSPYKAH EHSPPRQSRT GTPERARQLR bmy_16937T0/1-752 HLSNGQRSVG RSSPHPEGRR ESGSSPYKAH EHSPPRQSRT GTPERAXQLQ 451 500 ENSP00000277575/1-845 RKSVEEESKK LKDE----AD FQRKLPSGPQ DSSRQYNHAA ANQNSNATSN ENSBTAP00000025957/1-831 RKSSDEEGKR LRDEAQAQAQ AQRRLPPGAQ DGSGQYNHAA ANQNSNATSR ENSTTRP00000002009/1-829 RKSVDEETKK LKDE----VD FQRRLPSGPQ DNSRQYNHAT ANQNSNATSH BACU001756/1-721 RKSVDEESKK LKDE----VD FQRRLPSGPQ DNSRQYNHAA ANQNSNATSH bmy_16937T0/1-752 RKSVDEESKK LKDE----VD FQRRLPSGPQ DNSRQYNHAA ANQNSNATSH 501 550 ENSP00000277575/1-845 IRKEFVPKWN KPSDVSATER TAKYTMEGKG RAAHPALAVT VPGPAEVRVS ENSBTAP00000025957/1-831 ARKEFAPRWH KPSEAAVLEK TAKSAVEGRS RAAPPAL--- ----ADPRAP ENSTTRP00000002009/1-829 IRKEFVPKWN KPSDISAIEK TAKYAIEGRS RAAHPTPRVT VPGSADPWAP BACU001756/1-721 VKKEFVPKWN KPSDISAIEK TAKYAIEGRS RAAHPTLRVA VPGSADARPP bmy_16937T0/1-752 VRKEFVPKWN KPSDISAIEK TAKYAIEGRS RAAHPTPRVA VPGSADARPP 551 600 ENSP00000277575/1-845 NVRP-KMKAL DAEDGKRGST ASQYDNVPGP ELDSGASVEE ALERAYSQSP ENSBTAP00000025957/1-831 HVRQ-KTKVL DADEGKRGST ASQYDNVPED --GPGGAVEE ALERARAQ-- ENSTTRP00000002009/1-829 SIRQ-KVKVL DADEGKRGST ASQYDNVG-- --MASAALEQ ALERARSQSP BACU001756/1-721 SVRQ-KVKVL DADEGKRGST ASQYDNVPGD --SASAALEQ ALERARSQSP bmy_16937T0/1-752 SVRQKKVKVL DADEGKRGST ASQYDNVPGD --GASAALEQ ALERARSQSP 601 650 ENSP00000277575/1-845 RHALYPPSPR KHAEPSSSPS KVSNKFTFKV QPPSHARYPS QLDGEARGLA ENSBTAP00000025957/1-831 -------SPR RPAEPGASPS RAPPKFAFKV LPSSYAQHPF LPDGEDRGPA ENSTTRP00000002009/1-829 RGAAYPHSPR RHAEPSSSPS RAPNTFTFKL QPPSYAKYPS QLDGEDRGTA BACU001756/1-721 RGAAYAHSPR RHAEPSSSPS GAPNAFTFKI QPPGYAKHPS QSDGEDRGAA bmy_16937T0/1-752 RGAAYAHSPR RHAEPSSSPF AAPNAFTFKV QPPGYAKHPS QSDGEDRGAA 651 700 ENSP00000277575/1-845 HPPSYSNPPV YHGNSPKHFP TANSSFASPQ FSPGTQLNPS RRPHGSTLSV ENSBTAP00000025957/1-831 HPPSYSNPPT YQGSSPKRVP AANSSF---P FPPGAHTNPS RRPYGSTLSI ENSTTRP00000002009/1-829 HPPSYSDPPT YQGSSPKRIP AANSSFVSPP FPHGTPVNPS RRPYGSTLST BACU001756/1-721 HPPSYSEPPT YQGSSPKRIP AANSSFVSPP FPHGTPGYPS RRPYGSTLST bmy_16937T0/1-752 HPPSYSEPPT YQGSSPKRIP AANSSFVSPL FPHGTPVNPS RRPYGSTLST 701 750 ENSP00000277575/1-845 SASPEKSYSR PSPLVLPSSR IEVLPVDTGA GGYSGNSGSP KNGKLIIPPV ENSBTAP00000025957/1-831 SASPEKSYSR PTPLVQPSSR IEVLPVDLGA GGYSGNSGSP KNGRFILPPG ENSTTRP00000002009/1-829 DVSPEKPYSR ATPLVQPSSR IEVLPVDIGA AGYSGNSGSP KNGKFLLPPV BACU001756/1-721 DVSPEKSYSR PAPLVQPSSR IEVLPVDIGA GGYSGNSGSP KNGKFLLPPV bmy_16937T0/1-752 DVSPEKSYSR PAPLVQPSSR IEVLPVDIGA GGYSGNSGSP KNGKFLLPPV 751 800 ENSP00000277575/1-845 DYLPD-NRTW SEVSYTYRPE TQGQSWTRDA SRGNL---PK YSAFQLAPFQ ENSBTAP00000025957/1-831 DCLPD-NRKW SEVGYTWRPE MHGQPWTRDV NRGHLSSFPR HPTFHHAPYQ ENSTTRP00000002009/1-829 ECLPDNNGKW SEVGYALRPE MHGQSWTCDA NRSHLSSLPK YPTFQHVPYQ BACU001756/1-721 DCLPD-NGKW SEVGYALRPE MHGPSWTRDA NRSHLSSSPK YPTFQHVPYQ bmy_16937T0/1-752 DCLPD-NGKW SEVGYTLRPE MHGQSWTRDA NRSHLSSLPK YPTFQHVPYQ 801 850 ENSP00000277575/1-845 DHGLPAVSVD SPVRYKASPA AEDASPSGYP YSGPPPPAYH YRNRDGLSIQ ENSBTAP00000025957/1-831 DHSLPSVSVD GPVRYRTSPA LEDATSPGFQ YSGPSPPAYH YRNRDGLSMQ ENSTTRP00000002009/1-829 DHTLPAVSVD SPVRYRTSPA LEDASSSGYQ YSGPSPPVYH YRNRDGLSIQ BACU001756/1-721 DHTLPAVSVD SPVRYRTSPA VEDANSSGYQ YSGPSPPVYH YRNRDGLCIQ bmy_16937T0/1-752 DHTLPAVSVD SPVRYRTSPA LEDANSSGYQ YSGPSPPVYH YRNRDGLCIQ 851 900 ENSP00000277575/1-845 ESVLL ENSBTAP00000025957/1-831 ESVLL ENSTTRP00000002009/1-829 ESVLL BACU001756/1-721 ESVLL bmy_16937T0/1-752 ESVLL