KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:27:43 2014 Check: 00 .. Name: ENSTTRP00000005018/1-1068 Len: 1097 Check: 8769 Weight: 1.00 Name: ENSBTAP00000025974/1-1050 Len: 1097 Check: 9291 Weight: 1.00 Name: bmy_06730T0/1-1066 Len: 1097 Check: 250 Weight: 1.00 Name: BACU006421/1-1053 Len: 1097 Check: 6277 Weight: 1.00 // 1 50 ENSTTRP00000005018/1-1068 MGPGPSRAAR VLRPMFCALA LMVAASDRVA SAFNLDTRFL VVKEAGNPGS ENSBTAP00000025974/1-1050 MGPGPSRAAG VLRPLLGMLA LMVAASNRAA SAFNLDTRFL VVKEAGNPGS bmy_06730T0/1-1066 MGPGPSRAAR VLRSMLCALA LMVAASDRVA SAFNLDTRFL VVKEAGNPGS BACU006421/1-1053 MGPGPSRAAR VLRSMLCALA LMVAASDRVA SAFNLDTRFL VVKEAGNPGS 51 100 ENSTTRP00000005018/1-1068 LFGYSVALHR QTERQQRYLL LAGAPRDLAV PDGYTNQTGA VYLCPLTAHK ENSBTAP00000025974/1-1050 LFGYSVALHR QTERQQRYLL LAGAPRDLAV PDGYTNRTGA VYLCPLTAHK bmy_06730T0/1-1066 LFGYSVALHR QTERQQRYLL LAGAPRDLAV PDGYTNQTGA VYLCPLTAHK BACU006421/1-1053 LFGYSVALHR QTERQQRYLL LAGAPRDLAV PDGYTNQTGA VYLCPLTAHK 101 150 ENSTTRP00000005018/1-1068 NDCERMDIAE KSDPDHHIIE DMWLGVTVAS QGPAGRVLVC AHRXXXXXXX ENSBTAP00000025974/1-1050 NDCERMDIKE KSNPN-HIIE DMWLGVTVAS QGPAGRVLVC AHRYTQVLWS bmy_06730T0/1-1066 DDCERMDIAE KSDPDHHIIE DMWLGVTVAS QGPAGRVLVC AHRYTQVLWS BACU006421/1-1053 DDCERMDIAE KSDPDHHIIE DMWLGVTVAS QGPAGRVLVC AHRYTQVLWS 151 200 ENSTTRP00000005018/1-1068 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000025974/1-1050 GSEDQRRMVG KCYVRGNDLE LDARDDWQTY HNEMCNSNTD YLETGMCQLG bmy_06730T0/1-1066 GSEDQRRMVG KCYVRGNDLE LDPGDDWQTY HNEMCNSNTD YLETGMCQLG BACU006421/1-1053 GSEDQRRMVG KCYVRGNDLE LDPGDDWQTY HNEMCNSNTD YLETGMCQLG 201 250 ENSTTRP00000005018/1-1068 XXXXXXXXXX XXXXXXXXXX XXNSYMIQRK D--------- ---------- ENSBTAP00000025974/1-1050 TSGGFTQNTV YFGAPGAYNW KGNSYMIQRK D--------- ---------- bmy_06730T0/1-1066 ASGGFTQNTV YFGAPGAYNW KGNSYMIQRK D--------- ---------- BACU006421/1-1053 ASGGFTQNTV YFGAPGAYNW KGNSYMIQRK DWDLSEYSYK DPGDQGNLYI 251 300 ENSTTRP00000005018/1-1068 ---------- WDLSEYSYKD PADQGNLYIG YTMQVGSAVL HPTSTTIVTG ENSBTAP00000025974/1-1050 ---------- WDLSEYSYKD PEDQGNLYIG YTMQVGSAIL HPTNITIVTG bmy_06730T0/1-1066 ---------- WDLSEYSYKD PGDQGNLYIG YTMQVGSAIL HPTNTTIVTG BACU006421/1-1053 GNSYMIQRKD WDLSEYSYKD PGDQGNLYIG YTMQVGSAIL HPTNTTIVTG 301 350 ENSTTRP00000005018/1-1068 APRHRHVGAV FLLSQEAGGD LRRRQVLEGR QVGAYFGSAI ALADLNNDGW ENSBTAP00000025974/1-1050 APRHQHVGAV FLLSQEAGGD LRRRQVLEGT QVGAYFGSAI ALADLNNDGW bmy_06730T0/1-1066 APRHQHVGAV FLLSQEAGGD LRRRQVLEGR QVGAYFGSAI ALADLNNDGW BACU006421/1-1053 APRHQHVGAV FLLSQEAGGD LRRRQVLEGR QVGAYFGSAI ALADLNNDGW 351 400 ENSTTRP00000005018/1-1068 QDLLVGAPYY FERKEEVGGA IYVFMNQAGT SFPAHPSLLL HGPSRSAFGF ENSBTAP00000025974/1-1050 QDLLVGAPYY FERKEEVGGA IYIFMNQAGT SFPDHPSLLL HGPSRSAFGF bmy_06730T0/1-1066 QDLLVGAPYY FERKEEVGGA IYVFMNQAGT SFPAHPSLLL HGPSRSAFGF BACU006421/1-1053 QDLLVGAPYY FERKEEVGGA IYVFMNQAGT SFPAHPSLLL HGPSRSAFGF 401 450 ENSTTRP00000005018/1-1068 SVASIGDINQ DGFQDVAVGA PFEGLGKVYI YHGSSRGLLR QPQQVIDGEK ENSBTAP00000025974/1-1050 SVASIGDVNQ DGFQDIAVGA PFEGLGKVYI YHGSSRGLLR QPQQVIHGEQ bmy_06730T0/1-1066 SVASIGDINQ DGFQDVAVGA PFEGLGKVYI YHGSSRGLLR QPQQVIHGEK BACU006421/1-1053 SVASIGDINQ DGFQDVAVGA PFEGLGKVYI YHGSSRGLLR QPQQVIHGEK 451 500 ENSTTRP00000005018/1-1068 LGLPGLATFG YSLSGQMDVD ENLYPDLLVG SLSDHIVLLR ARPVINILHR ENSBTAP00000025974/1-1050 LGLPGLATFG YSLSGQMDVD ENFYPDLLVG SLSDRIVLLR ARPVINILHK bmy_06730T0/1-1066 LGLPGLATFG YSLSGQMDVD ENFYPDLLVG SLSDHIVLLR ARPVINILHR BACU006421/1-1053 LGLPGLATFG YSLSGQMDVD ENFYPDLLVG SLSDHIVLLR ARPVINILHR 501 550 ENSTTRP00000005018/1-1068 TLVARPSVLD PALCTATSCV QVELCFAYNQ SAGDPNYRRN ITLAYTLEAD ENSBTAP00000025974/1-1050 TLVAKPSILD PAFCTATSCV QVELCFAYNQ SAGNPNYRRN ITLAYTLEAD bmy_06730T0/1-1066 TLVARPSVLD PALCTATSCV QVQLCFAYNQ SAGDPNYRRN ITLAYTLEAD BACU006421/1-1053 TLVARPSVLD PALCTAASCV QVELCFAYNQ SAGDPNYRRN ITLAYTLEAD 551 600 ENSTTRP00000005018/1-1068 RDRRPPRLRF ARSQSAIFHG FFSMPEMRCQ TLELLLMDNV RDKLRPIIIS ENSBTAP00000025974/1-1050 RDRRPPRLHF ARSQSAVFHG FFSMPEMRCQ TLELLLMDNV RDKLRPITIS bmy_06730T0/1-1066 RDRRPPRLRF ARSQSAIFHG FFSMPEMRCQ TLELLLMDNV RDKLRPIIIS BACU006421/1-1053 RDRRPPRLRF ALSQSAIFHG FFSMPEMRCQ TLELLLMDNV RDKLRPIIIS 601 650 ENSTTRP00000005018/1-1068 MNYSLPLRMP ERPRLGLRSL DAYPVLNQAQ ALENHTEVQF QKECGPDNXX ENSBTAP00000025974/1-1050 MNYSLPLRLP DRPQLGLGSL DAYPVLNQAQ ALENHTEVQF QKECGQDNRC bmy_06730T0/1-1066 MNYSLPLRMP ERPRLGLRSL DAYPVLNQAQ ALENHTEVQF QKECGPDNKC BACU006421/1-1053 MNYSLPLRMP ERPRLGLRSL DAYPVLNQAQ ALENHTEVQF QKECGPDNKC 651 700 ENSTTRP00000005018/1-1068 XXXXXXXXXX XXXXXXXXXX LPYSRDFRKL LLSINLTNTP SRERAGEDAH ENSBTAP00000025974/1-1050 DSNLQMRAAF VSELGQRLSR LQYRRDLRKL LLSINVTNTP SRKRAGEDAH bmy_06730T0/1-1066 DSNLQMRAAF VSELGQQLSR LQYNRDFRKL LLSINLTNTP SRERAGEDAH BACU006421/1-1053 DSNLQMRAAF VSELGQQLSR LQYNRDFRKL LLSIYLTNTP SRERAGEDAH 701 750 ENSTTRP00000005018/1-1068 EALLTLAVPP ALLLSSVRPP GACQANETMT IVCELGNPFK RNQRMELLIA ENSBTAP00000025974/1-1050 EALLTLEVPP TLLLSSVRPP GACQANE--T IVCELGNPFK RNQRMELLIA bmy_06730T0/1-1066 EALLTLAVPP ALLLSSVRPP GACQANE--T IVCELGNPFK RNQKMELLIA BACU006421/1-1053 EALLTLAVPP ALLLSSVRPA GACQANE--T IVCELGNPFK RNQKMELLIA 751 800 ENSTTRP00000005018/1-1068 FEVIGVTLHT RELQAQLQLS TSSHQDDLWP ITLTLLVDYT LQASLSMVSH ENSBTAP00000025974/1-1050 FEVIGVTLHT RELQAQLQLS TSSHQDDLRP MTLPLLVDYT LQASLSMVNH bmy_06730T0/1-1066 FEVIGVTLHT RELQAQLQLS TSSHQDDLSP MTLTLLVDYT LQASLSMVSH BACU006421/1-1053 FEVIGVTLHT RELQAQLQLS TSSHQDDLSP MTLTLLVDYT LQASLSMVSH 801 850 ENSTTRP00000005018/1-1068 RLQSFFGGTV MGESGMKTVE DVGSPLKYEF QVGPVGEGLA ALGALILGLE ENSBTAP00000025974/1-1050 RLQSFFGGTV MGESGMKTVE DVGSPLKYEF QVGPMGEGLA ALGTLVLGLE bmy_06730T0/1-1066 RLQSFFGGTV MGESGMKTVE DVGSPLKYEF QVGPVGEGLA ALGTLVLGLE BACU006421/1-1053 RLQSFFGGTV MGESGMKTVE DVGSPLKYEF QVGPVGEGLA ALGTLVLGLE 851 900 ENSTTRP00000005018/1-1068 WPYEVSNGKW LLYPTEITVH GNGSWHCRPP GDLVNPLNLT LSVPEDRPPS ENSBTAP00000025974/1-1050 WPYEVSNGKW LLYPTEITVH GNGSWHCQPP GDLINPLNLT LSVPGDGPPS bmy_06730T0/1-1066 WPYEVSNGKW LLYPTEITVH GNGSWHCRPP GDLVNPLNLT LSVPGDRPPS BACU006421/1-1053 WPYEVSNGKW LLYPTEITVH GNGSWHCRPP GDLVNPLNLT LSVPGDRPPS 901 950 ENSTTRP00000005018/1-1068 PQRRRRQLDP GGGQGPLPVT LAAAKKAKSE IQLSCGGDHT RCVWLECRIP ENSBTAP00000025974/1-1050 PQRRRRQLDP GGGQGPPPVT LAAAKKAKSE IQLSCGSDHT HCVWLECPIP bmy_06730T0/1-1066 PQRRRRQLDP GGGQGPLPVT LAAAKKAKSE IQLSCGSDHT RCVWLECQIP BACU006421/1-1053 PQRRRRQLDP GGGQGPLPVT LAAAKKAKSE IQLSCGSDHT RCVWLECQIP 951 1000 ENSTTRP00000005018/1-1068 DAPVITNVTV QARVWNSTFI EDYKDFDRVR VASWATLFLR TSVPSINMEN ENSBTAP00000025974/1-1050 DAPVITNVTI QARVWNSTFI EDYRDFDRVR VASWATLFLR TGVPTINMEN bmy_06730T0/1-1066 DAPVITNVTV QARVWNSTFI EDYKDFDRVR VASWATLFLR TSVPTINMEN BACU006421/1-1053 DAPVITNVTV QARVWNSTFI EDYKDFDRVR VASWATLFLR TSVPTINMEN 1001 1050 ENSTTRP00000005018/1-1068 KTVRFSVDID SELVEELPAE IELWLVLVAV SAGLLLLGLI ILLLWKCDFF ENSBTAP00000025974/1-1050 KTVRFSVDID SDLVEELPAE IELWLVLVAV SAGLLLLGLI ILLLWKCGFF bmy_06730T0/1-1066 KTVRFSVDID SDLVEELPAE IELWLVLVAV SAGLLLLGLI ILLLWKCDFF BACU006421/1-1053 KTVR------ ---------- ---------- ---------- ------CDFF 1051 1100 ENSTTRP00000005018/1-1068 KRTRYYRIMP KYHGVRIREE ERYPPPGSTL PTKKHWVTSW QTRDRYY ENSBTAP00000025974/1-1050 KRARTRAL-- -YEAKRQKAE MKSQPSETER LTEDY----- ------- bmy_06730T0/1-1066 KRTRYYRIMP KYHGVRIREE ERYPPPGSTP PTKKHWVTSW QTRDRYY BACU006421/1-1053 KRTRYYRIMP KYHGVRIREE ERYPPPGSTP PTKKHWVTSW QTRDRYY