KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:27:44 2014 Check: 00 .. Name: ENSBTAP00000025981/1-567 Len: 577 Check: 8442 Weight: 1.00 Name: ENSP00000368766/1-572 Len: 577 Check: 1263 Weight: 1.00 Name: ENSTTRP00000009418/1-569 Len: 577 Check: 4728 Weight: 1.00 Name: BACU016901/1-459 Len: 577 Check: 1870 Weight: 1.00 Name: bmy_16223T0/1-375 Len: 577 Check: 4234 Weight: 1.00 // 1 50 ENSBTAP00000025981/1-567 MTFRDLLSFS FEGPGSD--- GSASGTGRGG GAGGAAASEG QAVDGVPGAA ENSP00000368766/1-572 MTFRDLLSVS FEGPRPDSSA GGSSAGGGGG SAGGAAPSEG PAVGGVPGGA ENSTTRP00000009418/1-569 MTFRYLLNVS FEGPCSDSSA GSSSAGGGGG GAGGAAASEG RAVDGVRVTA BACU016901/1-459 ---------- ---------- ---------- ---------- ---------- bmy_16223T0/1-375 MTFRYLLNVS FEGPCSDSSA GSSSAGGGGG GAGGAAASEG RAVDGVRVTA 51 100 ENSBTAP00000025981/1-567 GCGGGGGGVV GAGSSEDNRS SSGEPGSPGA GGEVNGTAAV EGLVVSAQGV ENSP00000368766/1-572 G---GGGGVV GAGSGEDNRS SAGEPGSAGA GGDVNGTAAV GGLVVSAQGV ENSTTRP00000009418/1-569 G-GSSGGGVV GAGNGEDNRS SAGEPGSTGA GGEVNGTAAV GGLVVSAQGV BACU016901/1-459 ---------- ---------- ---------- ---------- ---------- bmy_16223T0/1-375 G-GGSGGGVV GAGSGEDNRS SAGEPGGTGA GGEVNGTAAV GGLVVSAQGV 101 150 ENSBTAP00000025981/1-567 GVGVFLAAFI LTAVAGNVLV ILSVACNRHL QTVTNYFIVN LAVADLLLSA ENSP00000368766/1-572 GVGVFLAAFI LMAVAGNLLV ILSVACNRHL QTVTNYFIVN LAVADLLLSA ENSTTRP00000009418/1-569 GVGVFLAAFI LTAVAGNLMV ILSVACNRHL QTVTNYFIVN LAVADLLLST BACU016901/1-459 ---------- -MAVAGNLMV ILSVACNRHL QTVTNYFIVN LAVADLLLSA bmy_16223T0/1-375 GVGVFLAAFI LTAVAGNLMV ILSVACNRHL QTVTNYFIVN LAVADLLLSA 151 200 ENSBTAP00000025981/1-567 TVLPFSATME VLGFWAFGRA FCDVWAAVDV LCCTASILSL CTISVDRYVG ENSP00000368766/1-572 TVLPFSATME VLGFWAFGRA FCDVWAAVDV LCCTASILSL CTISVDRYVG ENSTTRP00000009418/1-569 TVLPFSATME VLGFWAFGRA FCDVWAAVDV LCCTASILSL CTISVDRYVG BACU016901/1-459 TVLPFSATME VLGFWAFGRA FCDVWAAVDV LCCTASILSL CTISVDRYVG bmy_16223T0/1-375 TVLPFSATME VLGFWAFGRA FCDVWAAVDV LCCTASILSL CTISVDRYVG 201 250 ENSBTAP00000025981/1-567 VRHSLKYPSI MTERKAAAIL ALLWAVAVVV SVGPLLGWKE PVPPDESFCG ENSP00000368766/1-572 VRHSLKYPAI MTERKAAAIL ALLWVVALVV SVGPLLGWKE PVPPDERFCG ENSTTRP00000009418/1-569 VRHSLKYPAI MTERKAAAIL ALLWAVALVV SVGPLLGWKE PVPPDERFCG BACU016901/1-459 VRHSLKYPAI MTERKAAAIL ALLWAVALVV SVGPLLGWKE PVPPDERFCG bmy_16223T0/1-375 VRHSLKYPAI MTERKAAAIL ALLWAVALVV SVGPLLGWKE PVPPDERFCG 251 300 ENSBTAP00000025981/1-567 ITEEAGYAVF SSLCSFYLPM AVIVVMYCRV YVVARSTTRS LEAGVKRERG ENSP00000368766/1-572 ITEEAGYAVF SSVCSFYLPM AVIVVMYCRV YVVARSTTRS LEAGVKRERG ENSTTRP00000009418/1-569 ITEEAGYAVF SSLCSFYLPM AVIVVMYCRV YVVARSTTRS LEAGVKRERG BACU016901/1-459 ITEEAGYAVF SSLCSFYLPM AIIVVMYCRV YVVARSTTRS LEAGVKRERG bmy_16223T0/1-375 ITEEAGYAVF SSLCSFYLPM AVIVVMYCRV YVVARSTTRS LEAGVKRERG 301 350 ENSBTAP00000025981/1-567 KASEVVLRIH CRGASPGSAE THWGMHSTKG RKFRSSLSVR LLKFSREKKA ENSP00000368766/1-572 KASEVVLRIH CRGAATGADG AH-GMRSAKG HTFRSSLSVR LLKFSREKKA ENSTTRP00000009418/1-569 KASEVVLRIH CRGASTGSDG AHGGMRSAKG HTFRSSLSVR LLKFSREKKA BACU016901/1-459 KASEVVLRIH CRGASTGSDG AHGGMRSAKG HTFRSSLSVR LLKFSREKKA bmy_16223T0/1-375 KASEVVLRIH CRGASTGSDG AHGGMRSAKG HTFRSSLSVR LLKFSREKKA 351 400 ENSBTAP00000025981/1-567 AKTLAIVVGV FVLCWFPFFF VLPLGSLFPQ LKPSEGVFKV IFWLGYFNSC ENSP00000368766/1-572 AKTLAIVVGV FVLCWFPFFF VLPLGSLFPQ LKPSEGVFKV IFWLGYFNSC ENSTTRP00000009418/1-569 AKTLAIVVGV FVLCWFPFFF VLPLGSLFPQ LKPSEGVFKV IFWLGYFNSC BACU016901/1-459 AKTLAIVVGV FVLCWFPFFF VLPLGSLFPQ LKPSEGVFKV IFWLGYFNSC bmy_16223T0/1-375 AKTLAIVVGV FVLCWFPFFF VLPLGE---- ---------- ---------- 401 450 ENSBTAP00000025981/1-567 VNPLIYPCSS REFKRAFLRL LRCQCHHSRQ RRHPLWSIYS RNWQASNGSS ENSP00000368766/1-572 VNPLIYPCSS REFKRAFLRL LRCQCRR-RR RRRPLWRVYG HHWRASTSGL ENSTTRP00000009418/1-569 VNPLIYPCSS REFKRAFLRL LRCQCHRSRQ HHRPLWSIYS HHWQASNGGP BACU016901/1-459 VNPLIYPCSS REFKRAFLRL LRCQCHRSRQ HHRPLWSIYG HHWQASNGGP bmy_16223T0/1-375 ---------- ---------- ---------- ---------- ---------- 451 500 ENSBTAP00000025981/1-567 HPDCPPGPGA IPTRAPQAFT V--PSAPGSL GASKAQAPAV TCRKMPCTFR ENSP00000368766/1-572 RQDCAPSSGD APPGAPLALT ALPDPDPEPP GTPEMQAPVA SRRKPPSAFR ENSTTRP00000009418/1-569 RPDYAPGPGA APSGALLALT T--PSAPGSP GTRKAQAPVV GRRKPPCAFR BACU016901/1-459 RPDYSPGPGA APSGALLALT A--PSAPGSP GTPKAQAPVV GRRKPPCAFR bmy_16223T0/1-375 ---------- ---------- ---------- ---------- ---------- 501 550 ENSBTAP00000025981/1-567 EWRLLRPFQR PATQLHAKVS SPSQKIHT-- ---REAMCAL HSEVEVVFLG ENSP00000368766/1-572 EWRLLGPFRR PTTQLRAKVS SLSHKIRAGG AQRAEAACAQ RSEVEAVSLG ENSTTRP00000009418/1-569 KWRLLGPFRK PTTPLHAKVS SLSQKKHA-- ---REAACAL HLEVEAVCLG BACU016901/1-459 KWRLLVPFQR PTTQLHAKVC SLSQKKHA-- ---REAACAL HLEVEAVSLG bmy_16223T0/1-375 ---------- ---------- ---------- ---------- ---------- 551 600 ENSBTAP00000025981/1-567 VPHDAAEGTT CQAYKLEDYS HLQETDI ENSP00000368766/1-572 VPHEVAEGAT CQAYELADYS NLRETDI ENSTTRP00000009418/1-569 VRSEAAEGTT CQAYELANSS LLRETDI BACU016901/1-459 VPSDAAEGTT CQAYELANSS HLRETDI bmy_16223T0/1-375 ---------- ---------- -------