KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:27:45 2014 Check: 00 .. Name: ENSBTAP00000025995/1-427 Len: 621 Check: 4960 Weight: 1.00 Name: BACU016226/1-277 Len: 621 Check: 5187 Weight: 1.00 Name: ENSTTRP00000006151/1-387 Len: 621 Check: 2376 Weight: 1.00 Name: bmy_08590T0/1-305 Len: 621 Check: 7842 Weight: 1.00 // 1 50 ENSBTAP00000025995/1-427 MPRRRPSFWA Q--------- ---------- ---------- ---------- BACU016226/1-277 MPRRRPSSCA Q--------- ---------- ---------- ---------- ENSTTRP00000006151/1-387 MPRRRPSSCA QXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_08590T0/1-305 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000025995/1-427 ---------- ---------- ---------- ---------- ---------- BACU016226/1-277 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006151/1-387 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_08590T0/1-305 ---------- ---------- ---------- ---------- ---------- 101 150 ENSBTAP00000025995/1-427 ---------- ---------- ---------- QVAPEGLPGG GDRRRRDPLL BACU016226/1-277 ---------- ---------- ---------- QVAPEGLPGG GDRRRRDPLL ENSTTRP00000006151/1-387 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXLGELIPVQ bmy_08590T0/1-305 ---------- ---------- ---------- ---------- ---------- 151 200 ENSBTAP00000025995/1-427 PRLLRPELRA ASDAGVFGVS RASESGAERW QAPQCESLHS DPGLGFRRSR BACU016226/1-277 PRLLLPELQA ASGAGASGGS RASEGGAEWW EA-------- ---------- ENSTTRP00000006151/1-387 SQQFLCQLRA ESEKQPR--- ---------- ---------- ---------- bmy_08590T0/1-305 ---------- ---------- ---------- ---------- ---------- 201 250 ENSBTAP00000025995/1-427 SRLPVLPTVA QRPARSRTVL RSLLLPPLLL AGEPPESAPA CPELGQRKDP BACU016226/1-277 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006151/1-387 ---------- ---------- ---------- ---------- ---------- bmy_08590T0/1-305 ---------- ---------- ---------- ---------- ---------- 251 300 ENSBTAP00000025995/1-427 RRGSAKETSD SLGSLLGEVL PGRFRQFLRQ FRADSAERLL PPTPSASQHQ BACU016226/1-277 ---------- ---------- ---------- ---------- PASSSASQHQ ENSTTRP00000006151/1-387 ---------- ---------- ---------- ---------- PPTSSPSQHQ bmy_08590T0/1-305 ---------- ---------- ---------- ---------- ---------- 301 350 ENSBTAP00000025995/1-427 RHSASEFNGS PPRCSSSHFL PELGGQSSYL KNSLKKILLH QIPALGPLSR BACU016226/1-277 R-GVSEHSGS PPQCPRYSFL PDL------- ---------- ---------- ENSTTRP00000006151/1-387 R-SVSEHSGS PPQCPRYSFL PDLGGQSLYF KNSLKKILLH QIPAL-SFRR bmy_08590T0/1-305 ---------- ---MPAVAYL SSR-GQSLYF KNSLEKILLH QIPALGPFRR 351 400 ENSBTAP00000025995/1-427 DYPQFTTV-K ANHRPQATQA PKLKAVLTHN SSGEGSGHRR RCCPFRVRFA BACU016226/1-277 ---------- ---EPHATQA PKLKAVLTHN SSGKGSGHRR RCCPFHVRFA ENSTTRP00000006151/1-387 DHSQFTTVEK TDHRPHTTQA PKLKAVLTHS SSGEGSGHRR RCCPFRVQFA bmy_08590T0/1-305 DHSQFTTVEK TN-QPHATQA PKLKAVLTHN SSGEGSGHRR RCCPFRVRFA 401 450 ENSBTAP00000025995/1-427 DETLRDTALR YWERSCAARQ GIFENRTAKP RSTASDRVFG SVGRWLESLP BACU016226/1-277 DETLRDTALH YWERSCAVRQ GILENRTA-S GSAALEQVFG SAGRWLESLP ENSTTRP00000006151/1-387 DETLRYTALR YWERSCAVRQ GILENRTA-S GSAASEQVFG SVGRWLESLP bmy_08590T0/1-305 DETLRDTALR YWERSCAXRQ GILENRTA-S VSAASEQVFR SVGRWLESLP 451 500 ENSBTAP00000025995/1-427 KALYPRAKEE TAASPFSWDF PGLSTLEPNG HLPEDTSMSS SLPFIPRATA BACU016226/1-277 KALYPRAKED TMANSFGWDF PGLSTLEPKG HLSEDTAMNS SLPFIPRGSG ENSTTRP00000006151/1-387 KALYPRAKED TMANSFGWDS RGLSTLEPKD HLSEDTSLNS SLPFIPRPTT bmy_08590T0/1-305 KALYPRAKED TMANSFGWDF PGLSTLEPKG HLSEDTSMNS SLPFIPRPTT 501 550 ENSBTAP00000025995/1-427 QRQRGDLKAL LEQESFLPSL VLHTILKRGR PK-------- -----G-YQL BACU016226/1-277 ----GTSKPF WSRSSALAPT ---PRQARDR ---------- -----GLYRH ENSTTRP00000006151/1-387 -RQRSGLKTF LEQE------ ---------- ---------- ---------- bmy_08590T0/1-305 QRQRGDLKTF LEQPTSPSPS LSFPGRASAD PKPATGCSAA PRPRGGSVGL 551 600 ENSBTAP00000025995/1-427 LLPSASHRTQ R--------- ---------- ---------- ---------- BACU016226/1-277 LLASEETATE STPRRSAE-- ---------- ---------- ---------- ENSTTRP00000006151/1-387 ---------- ---------- ---------- ---------- ---------- bmy_08590T0/1-305 ALAPPGAAET SQPLAKGSET FPLALRSRLR PCAAPPPSTC PSSLPDRGAG 601 650 ENSBTAP00000025995/1-427 ---------- ---------- - BACU016226/1-277 ---------- ---------- - ENSTTRP00000006151/1-387 ---------- ---------- - bmy_08590T0/1-305 RGGSPTPNFS FSLFVVQPKN C