KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:27:47 2014 Check: 00 .. Name: ENSP00000306324/1-590 Len: 596 Check: 8839 Weight: 1.00 Name: ENSBTAP00000026000/1-561 Len: 596 Check: 3132 Weight: 1.00 Name: ENSTTRP00000005503/1-557 Len: 596 Check: 3887 Weight: 1.00 Name: bmy_09743T0/1-459 Len: 596 Check: 6776 Weight: 1.00 Name: BACU004778/1-148 Len: 596 Check: 3278 Weight: 1.00 // 1 50 ENSP00000306324/1-590 MEPRAGCRLP VRVEQVVNGA LVVTVSCGER SFAGILLDCT KKSGLFGLPP ENSBTAP00000026000/1-561 MEPRAGCRLP VRVEQVVNGA LLVTASCGER SFAGILLDCT KKSGLFGLPP ENSTTRP00000005503/1-557 MEPRTGRRLP VRVEQVLNDA MLVTVSCGER SFAGILVDCT KKSGLFGLPP bmy_09743T0/1-459 ---------- ---------- ---MGACGCG GHSG----CE SGGNGLVLPG BACU004778/1-148 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000306324/1-590 LAPLPQVDES PVNDSHGRAP EEGDAEVMQL GSSSPPPARG VQPPETTRPE ENSBTAP00000026000/1-561 LAPLTQAQDA PVNGCHGPSP AEGDAEAMPL GTGPPAPEGG DGA-----PE ENSTTRP00000005503/1-557 SAPPPQAQDP PVNGCHGPAP TEGDTEAMQL GTGPPPPPSG DQAPGTASPE bmy_09743T0/1-459 RGAL----EE PHAHGHGHRS QVSRLNELH- ---------- ---------- BACU004778/1-148 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000306324/1-590 PPPPLVPPLP AGSLPPYPPY FEGAPFPHPL WLRDTYKLWV PQPPPRTIKR ENSBTAP00000026000/1-561 PPLPPVPPLP AGSLPPFPPY FEGAPFPPPL WLRNTYRQWV PQPPPRGVKR ENSTTRP00000005503/1-557 PPL-----LP AGSLPPFPPY FEGAPFPPPL WLRNTYRQWV PQPPPRGIKR bmy_09743T0/1-459 ---------- ----PPWPS- ---------- ---------- ---------- BACU004778/1-148 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000306324/1-590 TRRRLSRNRD PGRLILSTIR LRPRQVLCEK CKSTLSPPEA SPGPPAAPRA ENSBTAP00000026000/1-561 TRRRLSRNRD PGRLALSPIR LRPRQVLCEK CKSTQSPPEA SPGPPAAPR- ENSTTRP00000005503/1-557 TRRRLSRNRD PGHLALSPIR LRPRQVLCEK CKSTLSPPEA SPGPPAHPR- bmy_09743T0/1-459 ---------- RGQVAVA--- ----LVLCEK CKSTLSPPEA SPGPPATPR- BACU004778/1-148 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000306324/1-590 RRRLGSGPDR ELRKPEEPEN GEPTAAATAR RSKRERREED RAPAEQVPRS ENSBTAP00000026000/1-561 -------PRR EPRKPEDPDG GG--DAAAAK KSRRERREEA RP---GVPRS ENSTTRP00000005503/1-557 ---------R EPRKPEDPNG GG---DTTAK RRKRERRQEA RA---RVPRS bmy_09743T0/1-459 -------PRR EPRKPEDPDG GG---DATAK RSKRERRQEA RA---RVPRS BACU004778/1-148 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000306324/1-590 PVIKISYSTP QGKGEVVKIP SRVHGSLEPF RPQQAPQDDG SQDPEVLDRE ENSBTAP00000026000/1-561 PAIKISYSTP QGTGEVVEIP PRVHGSLEPF CPPPASP--G GLDPEP---- ENSTTRP00000005503/1-557 PVIKISYSTP QGTGEVVEIP SRVHGSLEPF CPPQAPP--G GPDPEA---- bmy_09743T0/1-459 PVIKISYSTP QGTGEVVEIP SRVHGSLEPF CPPQAPP--G GPDPEV---- BACU004778/1-148 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000306324/1-590 SRDRPSCAPS ASIPKLKLTR PVPAGADLPP PKIRLKPHRL GDSEHEPVYR ENSBTAP00000026000/1-561 PRDRPAAGAP ASIPKLKLTR PLPPGATPPP PKIRLKPRRL GAGKQEPVYR ENSTTRP00000005503/1-557 ---------P ASIPKLKLTR PLPPSAAPPP PKIRLKPHRP GAGEQEPVYK bmy_09743T0/1-459 PRDRPPAGAP ASIPKLKLTR PLPPSAAPPP PKIRLKPHRP GAGEQEPVYR BACU004778/1-148 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000306324/1-590 AELVGELNGY LRDS---SPA PCADGPA-GG LADLSSGSSG EDDDFKSCPQ ENSBTAP00000026000/1-561 AELVQELKGR G--------L PADGATHRGG LADSSSASSG EDDDCKGCPR ENSTTRP00000005503/1-557 AELVEELKGC GRGPRAGSPA PLADGSARSG LADSSSGSSG EDDDCKGCPR bmy_09743T0/1-459 AELVEELKGC GRGPRAGSPA PLADGSARSG LADSSSGSSG EDDDCKGCPR BACU004778/1-148 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000306324/1-590 GPQGRE--GL AFLVSCPEGR ADCASESACS SDSLDEARSS GSEGTPADTG ENSBTAP00000026000/1-561 GAHGPDNAGL AFLATCP-GR SGCTSELAWS SDSLDESKSS GSDGTLPDTC ENSTTRP00000005503/1-557 GEHGRD--GL AFLAACP-RR TGCASVSVCS SDSLDESKSS SSEVTSPDMC bmy_09743T0/1-459 GEHGRD--GL AFLAACP-QR TGCASVSVWS SDSLDESKSS SSEVTSPDMC BACU004778/1-148 ---------- ---------- ---------- ---------- --------MC 451 500 ENSP00000306324/1-590 DLSPGHGASA PSVSREARQT VPPLTVRLHT QSVSECITED GRTVAVGDIV ENSBTAP00000026000/1-561 DLSPGDG--V PSSSKGTRPT VPPLTVRLHT QSVSKCVTED GRTVAVGDIV ENSTTRP00000005503/1-557 DLSSGDGASV PASSKDARPT VPPLTVRLHT QSVSKCVTED GRTVAVGDIV bmy_09743T0/1-459 DLSSGDGASV PASSKDARPT VPPLTVRLHT QSVSKCVTED GRTVAVGDIV BACU004778/1-148 DLSSGDGASV PASSKDARPT VPPLTVRLHT QSVSKCVTED GRTVAVGDIV 501 550 ENSP00000306324/1-590 WGKIHGFPWW PARVLDISLG QKEDGEPSWR EAKVSWFGSP TTSFLSISKL ENSBTAP00000026000/1-561 WGKVHGFPWW PARVLDISLS QKEDGEPSWQ EAKVSWFGSP TTSFLSTSKL ENSTTRP00000005503/1-557 WGKVHGFPWW PARVLDISLS QKEDGEPSWQ EAKVSWFGSP TTSFLSISKL bmy_09743T0/1-459 WGKVHGFPWW PARVLDISLS QKEDGEPSWQ EAKVSWFGSP TTSFLSISKL BACU004778/1-148 WGKVHGFPWW PARVLDISLS QKEDGEPSWQ EAKVSWFGSP TTSFLSISKL 551 600 ENSP00000306324/1-590 SPFSEFFKLR FNRKKKGMYR KAITEAANAA RHVAPEIREL LTQFET ENSBTAP00000026000/1-561 SPFSEFFKLR FNRKKKGMYR KAITEAANAA QHVAPEIREL LTQFET ENSTTRP00000005503/1-557 SPFSEFFKLR FNRKKKGMYR KAITEAANAA RHVAPEIREL LTQFET bmy_09743T0/1-459 SPFSEFFKLR FNRKKKGMYR KAITEAANAA QHVAPEIREL LTQFET BACU004778/1-148 SPFSEFFKLR FNRKKKGMYR KAITEAANAA QHVAPEIREL LTQFET