KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:27:48 2014 Check: 00 .. Name: ENSP00000342778/1-546 Len: 551 Check: 4812 Weight: 1.00 Name: ENSTTRP00000011880/1-545 Len: 551 Check: 9632 Weight: 1.00 Name: ENSBTAP00000026003/1-543 Len: 551 Check: 4600 Weight: 1.00 Name: bmy_01087T0/1-514 Len: 551 Check: 8458 Weight: 1.00 Name: BACU014555/1-514 Len: 551 Check: 8903 Weight: 1.00 // 1 50 ENSP00000342778/1-546 MGAYLSQPNT VKCSGDGVGA PRLPLPYGFS AMQGWRVSME DAHNCIPELD ENSTTRP00000011880/1-545 MGAYLSQPNT VKCSGDGVGA SRLPLPYGFS AMQGWRVSME DAHNCIPELD ENSBTAP00000026003/1-543 MGAYLSQPNT VKCSGDGVGA SRLPLPYGFS AMQGWRVSME DAHNCIPELD bmy_01087T0/1-514 ---------M LVIGEEG--- ---------- ---------P DAHNCIPELD BACU014555/1-514 ---------- ---------- ---------- -----MKTTH DAHNCIPELD 51 100 ENSP00000342778/1-546 SETAMFSVYD GHGGEEVALY CAKYLPDIIK DQKAYKEGKL QK-----ALE ENSTTRP00000011880/1-545 SETAMFSVYD GHGGEEVALY CAKYLPDIIK DQKAYKEGKL QK-----ALE ENSBTAP00000026003/1-543 SETAMFSVYD GHGGEEVALY CAKYLPDIIK DQKAYKEGKL QK-----ALE bmy_01087T0/1-514 SETAMFSVYD GHGGEEVALY CAKYLPDIIK DQKAYKEGKL QK-----ALE BACU014555/1-514 SETAMFSVYD GHGGEEVALY CAKYLPDIIK DQKAYKEGKL QKSDYIQALE 101 150 ENSP00000342778/1-546 DAFLAIDAKL TTEEVIKELA QIAGRPTEDE DEKEKVADED DVDNEEAALL ENSTTRP00000011880/1-545 DAFLAIDAKL TTEEVIKELA QIAGRPTEDE DEKEKVADED DVDNEEAALL ENSBTAP00000026003/1-543 DAFLAIDAKL TTEEVIKELA QIAGRPTEDE DEKEKVADED DVDNEEAALL bmy_01087T0/1-514 DAFLAIDAKL TTEEVIKELA QIAGRPTEDE DEKEKVADED DVDNEEAALL BACU014555/1-514 DAFLAIDAKL TTEEVIKELA QIAGRPTEDE DEKEKVADED DVDNEEAALL 151 200 ENSP00000342778/1-546 HEEATMTIEE LLTRYGQNCH KGPPHSKSGG GTGEEPGSQG LNGEAGPEDS ENSTTRP00000011880/1-545 HEEATMTIEE LLTRYGQNCH KGAPHSKSGA GTGEEPGSQG LNGEAGPGDP ENSBTAP00000026003/1-543 HEEATMTIEE LLTRYGQNCH KGAPHSKSGA GTGEEPGSQG LNGEAGPEDP bmy_01087T0/1-514 HEEATMTIEE LLTRYGQNCH KGAPHSKSGA GTGEEPGSQG LNGEAGPGDP BACU014555/1-514 HEEATMTIEE LLTRYGQNCH KGAPHSKSGA GTGEEPGSQG LNGEAGPGDP 201 250 ENSP00000342778/1-546 TRETPSQENG PTAKAYTGFS SNSERGTEAG QVGEPGIPTG EAGPSCSSAS ENSTTRP00000011880/1-545 SRETSSEENG PTAKAHTGLS SNSECGTEAG QGGEPGTPTG EAGPSCSSAS ENSBTAP00000026003/1-543 SRETSAEENG PTAKAHTGLS SNSECGTEAG QGGEPGTPTG EAGPSCSSAS bmy_01087T0/1-514 SRETSSEENG PTAKAHTGLS SNSECGTEAG QGGEPGTPTG EAGPSCSSAS BACU014555/1-514 SRETSSEENG PTAKAHTGLS SNSECGTEAG QGGEPGTPTG EAGPSCSSAS 251 300 ENSP00000342778/1-546 DKLPRVAKSK FFEDSEDESD EAEEEEEDSE ECSEEEDGYS SEEAENEEDE ENSTTRP00000011880/1-545 DKLPRVAKSK FFEDSEDESD EAEEEEEDSE ECSEEEDGYS SEEAENEEDE ENSBTAP00000026003/1-543 DKLPRVAKSK FFEDSEDESD EAEEEEEDSE ECSEEEDGYS SEEAENEEDE bmy_01087T0/1-514 DKLPRVAKSK FFEDSEDESD EAEEEEEDSE ECSEEEDGYS SEEAENEEDE BACU014555/1-514 DKLPRVAKSK FFEDSEDESD EAEEEEEDSE ECSEEEDGYS SEEAENEEDE 301 350 ENSP00000342778/1-546 DDTEEAEEDD EEEEEEMMVP GMEGKEEPGS DSGTTAVVAL IRGKQLIVAN ENSTTRP00000011880/1-545 DDTEEAEE-D EEEEEEMMVP GMEGKEEPGS DSGTTAVVAL IRGKQLIVAN ENSBTAP00000026003/1-543 DDTEEAEE-D -DEEEEMMVP GMEGKEEPGS DSGTTAVVAL IRGKQLIVAN bmy_01087T0/1-514 DDTEEAEE-D EEEEEEMMVP GMEGKEEPGS DSGTTAVVAL IRGKQLIVAN BACU014555/1-514 DDTEEAEE-D -EEEEEMMVP GMEGKEEPGS DSGTTAVVAL IRGKQLIVAN 351 400 ENSP00000342778/1-546 AGDSRCVVSE AGKALDMSYD HKPEDEVELA RIKNAGGKVT MDGRVNGGLN ENSTTRP00000011880/1-545 AGDSRCVVSE AGKALDMSYD HKPEDEVELA RIKNAGGKVT MDGRVNGGLN ENSBTAP00000026003/1-543 AGDSRCVVSE AGKALDMSYD HKPEDEVELA RIKNAGGKVT MDGRVNGGLN bmy_01087T0/1-514 AGDSRCVVSE AGKALDMSYD HKPEDEVELA RIKNAGGKVT MDGRVNGGLN BACU014555/1-514 AGDSRCVVSE AGKALDMSYD HKPEDEVELA RIKNVGGKVT MDGRVNGGLN 401 450 ENSP00000342778/1-546 LSRAIGDHFY KRNKNLPPEE QMISALPDIK VLTLTDDHEF MVIACDGIWN ENSTTRP00000011880/1-545 LSRAIGDHFY KRNKNLPPEE QMISALPDIK VLTLTDDHEF MVIACDGIWN ENSBTAP00000026003/1-543 LSRAIGDHFY KRNKNLPPEE QMISALPDIK VLTLTDDHEF MVIACDGIWN bmy_01087T0/1-514 LSRAIGDHFY KRNKNLPPEE QMISALPDIK VLTLTDDHEF MVIACDGIWN BACU014555/1-514 LSRAIGDHFY KRNKNLPPEE QMISALPDIK VLTLTDDHEF MVIACDGIWN 451 500 ENSP00000342778/1-546 VMSSQEVVDF IQSKISQRDE NGELRLLSSI VEELLDQCLA PDTSGDGTGC ENSTTRP00000011880/1-545 VMSSQEVIDF IQSKISQRDE NGELRLLSSI VEELLDQCLA PDTSGDGTGC ENSBTAP00000026003/1-543 VMSSQEVIDF IQSKISQRDE NGELRLLSSI VEELLDQCLA PDTSGDGTGC bmy_01087T0/1-514 VMSSQEVIDF IQSKISQRDE NGELRLLSSI VEELLDQCLA PDTSGDGTGC BACU014555/1-514 VMSSQEVIDF IQSKISQRDE NGELRLLSSI VEELLDQCLA PDTSGDGTGC 501 550 ENSP00000342778/1-546 DNMTCIIICF KPRNTAELQP ESGKRKLEEV LSTEGAEENG NSDKKKKAKR ENSTTRP00000011880/1-545 DNMTCIIICF KPRNTAALQP ESGKRKLEEV LSTEEAEENG NSDKKKKAKR ENSBTAP00000026003/1-543 DNMTCIIICF KPRNTAAPQP ESGKRKLEEV LSTEGAEENG NSD-KKKAKR bmy_01087T0/1-514 DNMTCIIICF KPRNTAALQP ESGKRKQEEV LSTEEAEENG NSDNKKKAKR BACU014555/1-514 DNMTCIIICF KPRNTAALQP ESGKRKQEEV LSTEEAEENG NSDNKKKAKR 551 600 ENSP00000342778/1-546 D ENSTTRP00000011880/1-545 D ENSBTAP00000026003/1-543 D bmy_01087T0/1-514 D BACU014555/1-514 D