KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:27:49 2014 Check: 00 .. Name: ENSP00000373854/1-1161 Len: 1263 Check: 7260 Weight: 1.00 Name: ENSTTRP00000011819/1-819 Len: 1263 Check: 6327 Weight: 1.00 Name: ENSBTAP00000026008/1-1165 Len: 1263 Check: 5354 Weight: 1.00 Name: bmy_00716T0/1-1077 Len: 1263 Check: 9514 Weight: 1.00 Name: BACU011965/1-1127 Len: 1263 Check: 5923 Weight: 1.00 // 1 50 ENSP00000373854/1-1161 -----MTFGT VLLLSVLASY HGFNLDVEEP TIFQEDAGGF GQSVVQFG-- ENSTTRP00000011819/1-819 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026008/1-1165 MSCLGMAFAV VLFLTGLASY HGFNLDVEEP LVFREDGAGF GQSVVQFD-- bmy_00716T0/1-1077 MRCPGMAFGV VLLLAVLASY HGFNLDVEEP MVFQEDGAGF GQSVTRGGSP BACU011965/1-1127 MRCPGMAFGV VLLLAVLASY HGFNLDVEEP MVFQEDGAGF GQSVVQFG-- 51 100 ENSP00000373854/1-1161 -------GSR LVVGAP---- ---LEVVAAN QTGRLYDCAA AT--GMCQPI ENSTTRP00000011819/1-819 ---------- LVVGAP---- ---LEVVAVN KTGRLYDCLS AT--GLCRPI ENSBTAP00000026008/1-1165 -------RSR LVVGAP---- ---LEVVTVN KTGRLYDCTP AT--RRCRPI bmy_00716T0/1-1077 PGGGRSQQNR TFVRLPGCHR LVSAHLAEYT PRGREH-VLG PVPGGLHRSL BACU011965/1-1127 -------RSR LVVGAP---- ---LEVVAVN KTGRLYDCLA AT--GLCRPI 101 150 ENSP00000373854/1-1161 P-----LHIR PEAVNMS--- --LGLTLAAS TNGSRLL--- -----ACGPT ENSTTRP00000011819/1-819 L-----LNTP PEAVNTS--- --LGLSLVAS TELSWLL--- -----ACGPT ENSBTAP00000026008/1-1165 S-----LNTP SEAVDMS--- --LGLSLAAS THLSQLL--- -----ACGPT bmy_00716T0/1-1077 LAAGERFWVP GGSRGRNRGQ RRLGLGEKEG KCSGGLLAHT GLCPQACGPT BACU011965/1-1127 L-----LNTP PEAVNMS--- --LGLSLVAS THLSWLL--- -----ACGPT 151 200 ENSP00000373854/1-1161 LHRVCGENSY SKGSCLLLGS RWEIIQTVPD ATPECPHQEM DIVFLIDGSG ENSTTRP00000011819/1-819 MHRACGENMY A-SACLLLGX XXXXXXXXXX XXXXCPNQEI DVVFLIDGSG ENSBTAP00000026008/1-1165 VHKACGENMY LKGTCLLLSS HLQIIRTVPA ALPECTNQEI DIAFLIDGSG bmy_00716T0/1-1077 MHRACGENMY AKGTCLLLGS HLQIIRTVPA TLPECPNQEI DIVFLIDGSG BACU011965/1-1127 MHRACGENMY AKGACLLLGS HLQIIRTVPA TLSECPNQEI DIVFLIDGSG 201 250 ENSP00000373854/1-1161 SIDQNDFNQM KGFVQAVMGQ FEGTDTL--- ---------- ---------- ENSTTRP00000011819/1-819 SIDRNDFERM KNFVRAVMDQ YKGTHTL--- ---------- ---------- ENSBTAP00000026008/1-1165 SIDQTDFKRM KNFVRAVMDR SKGTNTQ--- ---------- ---------- bmy_00716T0/1-1077 SIVRNDFKRM KNFVRAVMDQ FKGTHTLVKA GPPRPGDWDR GGSTSGKANL BACU011965/1-1127 SIDRNDFKRM KNFVRAVMDQ FKGTHTL--- ---------- ---------- 251 300 ENSP00000373854/1-1161 ---------- ---------- ---------- --FALMQYSN LLKIHFTFTQ ENSTTRP00000011819/1-819 ---------- ---------- ---------- --FLLMQYSN LVKTHFTFSQ ENSBTAP00000026008/1-1165 ---------- ---------- ---------- --FSLMQYSN LMKTHFTFNQ bmy_00716T0/1-1077 GGGLASLGAG SVDLCHDEAR VQGQGPSSWP SQFSLMQYSN LLKTHFTFSQ BACU011965/1-1127 ---------- ---------- ---------- --FSLIQYSN LLKTHFTFSQ 301 350 ENSP00000373854/1-1161 FRTSPSQQSL VDPIVQLKGL TFTATGILTV VTQLFHHKNG ARKSAKKILI ENSTTRP00000011819/1-819 FQTSRSPQSL VDPIVQLSGL TFTATGTQTV VXXXXXXXXX XXXXXXXXXX ENSBTAP00000026008/1-1165 FWTSRSSQSL VDPIVQLNGL TFTATGIRTV VRELFHSKNG ARKSARKIII bmy_00716T0/1-1077 FQTSRSPQSL VDPIVQLSGL TFTATGIQTV VKELFHSKNG ARKTAKKILI BACU011965/1-1127 FQTSQSPQSL VDPIVQLSGL TFTATGIQTV VKELFHSKNG ARKTAKKILI 351 400 ENSP00000373854/1-1161 VITDGQKYKD PLEYSDVIPQ AEKAGIIRYA IGVGHAFQGP TARQELNTIS ENSTTRP00000011819/1-819 XXXXXXXXXX XXXXXXXXXX XXXXXXXXYA VGVGDAFQDP TTRQELNIIG ENSBTAP00000026008/1-1165 VITDGEKYKD PLEYKDVIPE AEKANIIRYA IGVGDAFQAH AAREELKIIG bmy_00716T0/1-1077 VITDGQKYKD PLKYSDVIPQ ADRANIIRYA IGVGDAFQDP TARQELNIIG BACU011965/1-1127 VITDGQKYKD PLKYSDVIPQ ADRANIIRYA IGVGDAFQDP TARQELNIIG 401 450 ENSP00000373854/1-1161 SAPPQDHVFK VDNFAALGSI QKQLQEKIYA VEGTQSRASS SFQHEMSQEG ENSTTRP00000011819/1-819 SVPSEDHVFK VDNLAALSNT QKQLQE-IFA VEGTQSKTSR SFQHEMSQEG ENSBTAP00000026008/1-1165 SVPSEDHVFK VDSFAALSSI QKQLQEKIFA VEGTQSGTSS SFQHEMSQEG bmy_00716T0/1-1077 SVPSEDHVFK VDNFAALSNI QTQLQEKIFA ---------- ---------- BACU011965/1-1127 SVPSEDHVFK VDNFAALSNI QQQLQEKIFA VEGTQSKTSS FFQHEMSQEG 451 500 ENSP00000373854/1-1161 FSTALTMDGL FLGAVGSFSW SGGAFLYPPN MSPTFINMSQ ENVDMRDSYL ENSTTRP00000011819/1-819 FSSVLTTDGP VLGAVGSFSW SGGAFLYPEN RSPTFIHVSQ EHADMSDSYL ENSBTAP00000026008/1-1165 FSSILTMDGP VLGAVGSFSW SGGAFLYPQN KNPTFINMSQ EHVDMRDSYL bmy_00716T0/1-1077 -------DGP VLGAVGSFSW SGGAFLYPPN RSPTFINMSQ EHADMRDSYL BACU011965/1-1127 FSSILTTDGP VLGAVGSFSW SGGAFLYPPN RSPTFINMSQ EHADMRDSYL 501 550 ENSP00000373854/1-1161 GYSTELALWK GVQNLVLGAP RYQHTGKAVI FTQVSRQWRK KAEVTGTQIG ENSTTRP00000011819/1-819 GYSTELAVWK GVHSLVLGAP RHQHTGKVVI FTQVSGQWRL KAEVTGTQIG ENSBTAP00000026008/1-1165 GYSTELALWR GAQSLILGAP RHQHTGKVVL FTQVSRQWRP QAEVTGTQIG bmy_00716T0/1-1077 ---------- ---------- ---------- ---------- ---------- BACU011965/1-1127 GYSTELAIWK GVHSLVLGAP RHQHTGKVVI FTQVSGQWRP KAEVTGTQIG 551 600 ENSP00000373854/1-1161 SYFGASLCSV DVDSDGSTDL ILIGAPHYYE QTRGGQVSVC PLPRG-RVQW ENSTTRP00000011819/1-819 SYFGASLSSV DVDRDGSSDL VLIGAPHYYE QSRGGQVSVC PFPRGQRAKR ENSBTAP00000026008/1-1165 SYFGASLCSV DVNGDSSSDL VLIGAPHFYE QTQGGQVSVC PFPRG-GTKW bmy_00716T0/1-1077 ---------- -------ADC RLPALPQA-- ---------- PVFRA-FTE- BACU011965/1-1127 SYFGASLSSV DVDRDGSSDL VLIGAPHYYE QSRGGQVSVC PLPQA-RAKW 601 650 ENSP00000373854/1-1161 QCDAVLRGEQ GHP-WGRFGA ALTVLGDVNE DKLIDVAIGA PGEQENRGAV ENSTTRP00000011819/1-819 QCGAVLRGEP GHP-WGRFGA ALTVLGDVNG DRLTDVAIGA PGEQENRGAV ENSBTAP00000026008/1-1165 QCDAVLRGEP GHP-WSRFGA ALTVLGDVNG DRLADVAIGA PGEQENQGAV bmy_00716T0/1-1077 ------RGSG PHPGWA---- ---------- --------GG PG---RRG-- BACU011965/1-1127 QCGAVLRGEQ GHP-WGRFGA ALTVLGDVNG DRLTDVAIGA PGEQENRGAV 651 700 ENSP00000373854/1-1161 YLFHGASESG ISPSHSQRIA SSQLSPRLQY FGQALSGGQD LTQDGLMDLA ENSTTRP00000011819/1-819 YLFHGTSGLG ISPAHSQWIA GSQLSPRLQY FGHSLSGGQD LTQDGLVDLA ENSBTAP00000026008/1-1165 YLFHGTSELG IGPMHSQRIA GSQLSLGLQY FGRSLSGGQD LTQDGLVDLA bmy_00716T0/1-1077 ---------- ---------- ---------- -----PGARA AAQRPILSLS BACU011965/1-1127 YLFHGTSGLG ISPAHSQRIA GSQLSPRLQY FGHSLSGGQD LTQDGLVDLA 701 750 ENSP00000373854/1-1161 VGARGQVLLL RSLPVLKVGV AMRFSPVEVA KAVYRCWEEK PSALEAGDAT ENSTTRP00000011819/1-819 VGAKGHALLL RSLPVLNVEV AMRFTPPEVT KSVYQCWEEL PTALEAGDAT ENSBTAP00000026008/1-1165 VGAQGHALLL RSLPVLKVNV TMKFTPPEVT KAVYQCWDEL TTTMEAGQAT bmy_00716T0/1-1077 CTR------- RSLPVLNVEV AVRFTPPEVT KSVYQCWEEL PTALEAGDAT BACU011965/1-1127 VGAQGHALLL RSLPVLNVEV AMRFTPPEVT KSVYQCWEEL PTALEAGDAT 751 800 ENSP00000373854/1-1161 VCLTIQKSSL DQLGDIQSSV RFDLALDPGR LTSRAIFNET KNPTLTRRKT ENSTTRP00000011819/1-819 VCLTIHKSSQ DQLXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000026008/1-1165 VCLTIHKSSQ DRLGDIRSSV TYDLALDPGR LISRAVFGET RNWTLTRRKT bmy_00716T0/1-1077 VCLTIHKSSQ DQLGDVRSSV MYDLALDPGR LISRAIFDET KNWTLTRRKT BACU011965/1-1127 VCLTIHKSSQ DQLGDVRSSV MYDLALDPGR LISRAIFDET KNWTLTRRKT 801 850 ENSP00000373854/1-1161 LGLGIHCETL KLLLPDCVED VVSPIILHLN FSLVREPIPS PQNLRPVLAV ENSTTRP00000011819/1-819 XXXXXXXXXX XXXXXXCVED MGNPIILRLN FFLVGEPTSS SQNLRPVLAV ENSBTAP00000026008/1-1165 LELGEHCDSM KLLIPDCVED MVNPIILRLN FSLVGEPIAS SQNLRPVLAV bmy_00716T0/1-1077 LGLGEHCDTM KLLLPDCVED VGNPIILRLN XSLVGEPISS SQNLRPVLAV BACU011965/1-1127 LGLGEHCDTM KLLLPDCVED VGNPIILRLN FSLVGEPISS SQNLRPVLAV 851 900 ENSP00000373854/1-1161 GSQDLFTASL PFEKNCGQDG LCEGDLGVTL SFSGLQTLTV GSSLELNVIV ENSTTRP00000011819/1-819 GSQDRFTASL PFEKNCGQ-- ---GDLSVSL SFSGLQTLVV GSSLE----- ENSBTAP00000026008/1-1165 GSQDLFTASL PFEKNCGQDH LCEGDLSVNL SFLGLETLVV GSSLELNVAV bmy_00716T0/1-1077 GSQDRFTASL PFEKNCGQDH LCEGDLSVSL SFSGLQTLVV GSSLELNVTV BACU011965/1-1127 GSQDRFTASL PFEKNCGQDH LCEGDLSVSL SFSGLQTLVV GSSLELNVTV 901 950 ENSP00000373854/1-1161 TVWNAGEDSY GTVVSLYYPA GLSHRRVSGA QKQPHQSALR LACETVPTED ENSTTRP00000011819/1-819 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026008/1-1165 MVSNEGEDSY GTVISFYYPA GLSYRRTLAI Q-QPGQRPLR LACEAVPTGN bmy_00716T0/1-1077 TVWNEGEDSY GTVISFYYPA GLSYRRVLRI Q-RALRSELP PNLHHSSPSS BACU011965/1-1127 TVWNEGEDSY GTVISFYYPA GLSYRRVLRI Q--------- ---------- 951 1000 ENSP00000373854/1-1161 EGLRSSRCSV NHPIFHEGS- --NGTFIVTF DVSYKATLGD RMLMRASASS ENSTTRP00000011819/1-819 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026008/1-1165 EGLKSSGCSI NHPIFREGI- --KGTFIITF DVSYKATLGD KFHLSANISS bmy_00716T0/1-1077 WPISFPHSTM AFPIPNPSFF LPQGTFIVTF DVSYKATLGD KLLLRANASS BACU011965/1-1127 ---------- ---------- ---GTFIVTF DVSYKATLGD KLLLRANASS 1001 1050 ENSP00000373854/1-1161 ENNKASSSKA TFQLELPVKY AVYTMISRQE ESTKYFNFAT SDEKKMKEAE ENSTTRP00000011819/1-819 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026008/1-1165 ENNKPTSNKT TSQLELPVKY AVYTVISRQE ESTKYFNFSA SDQKSRREAE bmy_00716T0/1-1077 ENNKPTSNNT TFQLELPVKY AVYTVISRQE ESTKYFNFSA SDQKSRKEAE BACU011965/1-1127 ENNKPTSNNT TFQLELPVKY AVYTVISRQE ESTKYFNFSA SDQKSRKEAE 1051 1100 ENSP00000373854/1-1161 HRYRVNNLSQ RDLAISINFW VPVLLNGVAV WDVVMEAPSQ SLPCVSERKP ENSTTRP00000011819/1-819 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026008/1-1165 HRYRVNNLSQ RELAISVHFW VPILLNGVVV WDVALVAPSQ SLPCVSERES bmy_00716T0/1-1077 HRYRVNNLSQ RDLAISIHFW VPVLLNGVAV WDVAMVAPSQ SLPCVSEREP BACU011965/1-1127 HRYRVNNLSQ RDLAISIPSW VPVLLNGVAV WDVAMVAPSQ SLPCVSEREP 1101 1150 ENSP00000373854/1-1161 PQHSDFLTQI SRSPMLDCSI ADCLQFRCDV PSFSVQEELD FTLKGNLSFG ENSTTRP00000011819/1-819 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026008/1-1165 PQQPDFQTQM PSSLVLDCSI ADCLRFRCDI PSFGVQEELD FILKGNLSFG bmy_00716T0/1-1077 PQQPDFQTQI PSSLVLDCSI ADCLRFRCDI PSFGVREELD FILKGNLSFG BACU011965/1-1127 PQQPDFQTQI PSSLVLDCSV ADCLRFRCDI PSFGIQEELD FILKGNLSFG 1151 1200 ENSP00000373854/1-1161 WVRETLQKKV LVVSVAEITF DTSVYSQLPG QEAFMRAQME MVLEEDEVYN ENSTTRP00000011819/1-819 ---------- ---------- ---------- --------VE MVLEEYEVYN ENSBTAP00000026008/1-1165 WASQLLQKKT LVVSMAEVTF NRSVYTQISG QEAFLRAQVE MVLEEYEVYS bmy_00716T0/1-1077 WASQTLQKKA LVVSVAEIIF NRSVYSQLPG QEAFLRAQVE MVLEEYEVYN BACU011965/1-1127 WASQTLQKKA LVVSVAEIIF NRSVYSQLPG QEAFLRAQVE MVLEEYEVYN 1201 1250 ENSP00000373854/1-1161 AIPIIMGSSV GALLLLALIT ATLYKLGFFK RHYKEMLEDK PEDTATFSGD ENSTTRP00000011819/1-819 PIPLIVSSSV GGLLLLALIT ATLYKCGFFK RQYKEMMGDN PEDTVTFNGE ENSBTAP00000026008/1-1165 PMPLLVSSSM GGLLLLALIT ALLYKCGFFK RQYKEMMDNK PENTA-LNGE bmy_00716T0/1-1077 PIPLIASSSV GGLLLLALIT ATLYKCGFFK RQYKEMMGDN PEDTATFNGE BACU011965/1-1127 PIPLIVSSSV GGLLLLALIT ATLYKCGFFK RQYKEMMGDN PEDTATFNGE 1251 1300 ENSP00000373854/1-1161 DFSCVAPNVP LS- ENSTTRP00000011819/1-819 YLSGEAPNQP LS- ENSBTAP00000026008/1-1165 DIHHETPDLP LSE bmy_00716T0/1-1077 YLSCEAPNQP LS- BACU011965/1-1127 NLSCEAPNQP LS-