KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:27:53 2014 Check: 00 .. Name: ENSP00000364207/1-917 Len: 937 Check: 9997 Weight: 1.00 Name: ENSTTRP00000010278/1-920 Len: 937 Check: 2433 Weight: 1.00 Name: ENSBTAP00000026052/1-925 Len: 937 Check: 4067 Weight: 1.00 Name: bmy_01810T0/1-902 Len: 937 Check: 968 Weight: 1.00 Name: BACU017569/1-932 Len: 937 Check: 4745 Weight: 1.00 // 1 50 ENSP00000364207/1-917 MEGAGENAPE SSSSAPGSEE S---ARDPQV PPPEEESGDC ARSLEAVPKK ENSTTRP00000010278/1-920 MESTQEKPAE SSSPVPGSEE PAGLARDPEV LPPKESEG-C ARPLETAPKK ENSBTAP00000026052/1-925 MEGAQESPAE SGSSVPWSEE PAGSAKVPEV SLSEESEG-C TRPLEATPPK bmy_01810T0/1-902 MESTQEKPAE SSSPVPGSEE PAGLARDPDV LPPKESEG-C ARPLETTPKK BACU017569/1-932 MESTQEKPAE SSSPVPGSEE PAGLARDPDV LPPKESEG-C ARPLETAPKK 51 100 ENSP00000364207/1-917 LCGYLSKFGG KGPIRGWKSR WFFYDERKCQ LYYSRTAQDA NPLDSIDLSS ENSTTRP00000010278/1-920 ICGYLSKFGG KGPIRGWKSR WFFYDERKCH LYYSRTAQDA NPLDSIDLSS ENSBTAP00000026052/1-925 LCGYLSKFGG KGPIRGWKSR WFFFDERKCH LYYSRTAQDA NPLDSIDLSS bmy_01810T0/1-902 LCGYLSKFGG KGPIRGWKSR WFFYDERKCH LYYSRTAQDA NPLDSIGLSS BACU017569/1-932 LCGYLSKFGG KGPIRGWKSR WFFYDERKCH LYYSRTAQDA NPLDSIDLSS 101 150 ENSP00000364207/1-917 AVFDCKADAE EGIFEIKTPS RVITLKAATK QAMLYWLQQL QMKRWEFHNS ENSTTRP00000010278/1-920 AVFDCKADAE EGTFEIKTPS RIITLKAATK QAMLYWLQQL QMKRWEFHNS ENSBTAP00000026052/1-925 AVFDCKADAE EGTFEIKTPN RIITLKAATK QAMLYWLQQL QMKRWEFHNS bmy_01810T0/1-902 AVFDCKADAE EGTFEIKTPS RVITLKAATK QAMLYWLQQL QMKRWEFHNS BACU017569/1-932 AVFDCKADAE EGTFEIKTPS RIITLKAATK QAMLYWLQQL QMKRWEFHNS 151 200 ENSP00000364207/1-917 PPAPPATPDA ALAGNGPVLH LELGQEEAEL EEFLCPVKTP PGLVGVAAAL ENSTTRP00000010278/1-920 PPAPPVVPDA ALAGNGPALR LELEQEEAEL EEFLCPVKTP TGLVGMAAAL ENSBTAP00000026052/1-925 LPALPAAHDA ALAGNGPALR LELEQEEEEE EAFLCPVKTP TDLVGVAAAW bmy_01810T0/1-902 PPAPPAVPDA ALAGNGPALR LELEQEEAEL EEFLCPVKTP TGLVGMAAAL BACU017569/1-932 PPAPPAVPDA ALAGNGPALR LELEQEEAEL EEFLCPVKTP TGLVGMAAAL 201 250 ENSP00000364207/1-917 QPFP----AL QNISLKHLGT EIQNTMHNIR GNKQAQGTGH EPPGEDSPQS ENSTTRP00000010278/1-920 QPVPAMPLAL QNISLKHLGT EIQNTMYNIR GNKQTQGTGH RPSGEDSSLS ENSBTAP00000026052/1-925 QPVHARPLAL QNISLKHLGT EIQNTMCNIR GNKQTQGANH RPPGEDSPLI bmy_01810T0/1-902 QPVPAMPLAL QNISLKHLGT EIQNTMYNIR GNKQTQGTGH RPPGEDSPLS BACU017569/1-932 QPVPAMPLAL QNISLKHLGT EIQNTMYNIR GNKQTQGTGH RPPGEDSALS 251 300 ENSP00000364207/1-917 GEPQREEQPL ASDASTPGRE PEDSPKPAPK PSLTISFAQK AKRQNNTFPF ENSTTRP00000010278/1-920 EEPQREEQPS PPDLSAPGKD PADSPKPTPK SSLTANLIQK AKRQSNTFPL ENSBTAP00000026052/1-925 EETQREEQPS PPGPGAPGKD PANSL----K SSLTTSLIRK AKSQSNTFPL bmy_01810T0/1-902 EEPQREEQPS PPDLSAPGKD PADSLKPTPK SSLTANLIQK AKRQNNTFPL BACU017569/1-932 EEPQREDQPS PPDLSAPGKD PADSLKPTPK SSLTANLIQK AKRQSNTFPL 301 350 ENSP00000364207/1-917 FSEGITRNRT AQEKVAALEQ QVLMLTKELK SQKELVKILH KALEAAQQEK ENSTTRP00000010278/1-920 FTEGLTRNRT AQEKVLALEQ QVLMLTKELK AQKELVKILH KALEAAQQEK ENSBTAP00000026052/1-925 FSEGLMRNRT AQEKVLALEQ QVLMLTKELK AQKELVKILH KALEAAQQEK bmy_01810T0/1-902 FTEGLTRNRT AQEKVLALEQ QVLMLTKELK AQKELVKILH KALEAAQQEK BACU017569/1-932 FTEGLTRNRT AQEKVLALEQ QVLMLTKELK AQKELVKILH KALEAAQQEK 351 400 ENSP00000364207/1-917 RASSAYLAAA EDKDRLELVR HKVRQIAELG RRVEALEQER ESLAHTASLR ENSTTRP00000010278/1-920 RVSSAYLAAA EDKDRLELVR HKVRQIAELG RRVEALEQER ESLVQTASLR ENSBTAP00000026052/1-925 RVSSAYLAAA QDKDRLELVR HKVRQIAELG RRVEALERER ESLAQTASLQ bmy_01810T0/1-902 RVSSAYLAAA EDKDRLELVR HKVRQIAELG RRVEALEQER ESLVQAASLR BACU017569/1-932 RVSSAYLAAA EDKDRLELVR HKVRQIAELG RRVEALEQER ESLVQAASLR 401 450 ENSP00000364207/1-917 EQQVQELQQH VQLLMDKNHA KQQVICKLSE KVTQDFTHPP DQSPLRPDAA ENSTTRP00000010278/1-920 EQEVQELRQH VQLLLDKNQA KQEVIQKLSE KVTQDFMHPP NQPPAPPDAA ENSBTAP00000026052/1-925 EQEIRELQQH VQLLLDKNQA KQQVICKLSE KVTQDFMKAP -------EEA bmy_01810T0/1-902 EQEVQELRQH VQLLMDKNEA KQQVICKLSE KVTQDFMHPP RQPPAPPDAA BACU017569/1-932 EQEVQELRQH VQLLMDKNEA KQQVICKLSE KVTQDFMHPP CQPPAPLDAA 451 500 ENSP00000364207/1-917 NRDFLSQQGK IEHLKDDMEA YRTQNCFLNS EIHQVTKIWR KVAEKEKALL ENSTTRP00000010278/1-920 DRDLLSQQEK MEHLKDDMEA YRTQNRFLNS EIHQVTRIWR KVAEKEKALL ENSBTAP00000026052/1-925 DRDFLSQQEK MEHLKDDMEA YRTQNRFLNS EIHQVTKIWR KVAEKEKALL bmy_01810T0/1-902 DRDLLSQQEK MEHLKDDMEA YRTQNLFLNS EIHQVTKIWR KVAEKEKALL BACU017569/1-932 DRDLLSQQEK MEHLKDDMEA YRTQNRFLNS EIHQVTKIWR KVAEKEKALL 501 550 ENSP00000364207/1-917 TKCAYLQARN CQVESKYLAG LRRLQEALGD EASECSELLR QLVQEALQWE ENSTTRP00000010278/1-920 MKCAYLQAKN CQVESKYLAG LRRLQEAVGV EAGECSELLR QLIQEALQWE ENSBTAP00000026052/1-925 MKCAYLQAQN CQVESKYLAG LRRLQEALGV EAGECSELLR QLIQEALQWE bmy_01810T0/1-902 MKCAYLQAKN CQVESKYLAG LRRLQEAVGV EAGECSELLR QLIQEALQWE BACU017569/1-932 MKCAYLQAKN CQVESKYLAG LRRLQEAVGV EAGECSELLR QLIQEALQWE 551 600 ENSP00000364207/1-917 AGEASSDSIE LSP--ISKYD EYGFLTVPDY EVEDLKLLAK IQALESRSHH ENSTTRP00000010278/1-920 ASEASADSVV LSP--ISEYD EYGFXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000026052/1-925 ASEASADSVV LSPSTISEYD EYGFLTVPNY EVEDLRLLAK IQALEVHSHH bmy_01810T0/1-902 ASEASADSVV LSP--ISEYD EYGFLTIPNY EMEDLRLLAK IQALEVHSHH BACU017569/1-932 ASEASADSVV LSP--ISEYD EYGFLTVPNY EVEDLRLLAK IQALEVHSHH 601 650 ENSP00000364207/1-917 LLGLEAVDRP LRERWAALGD LVPSAELKQL LRAGVPREHR PRVWRWLVHL ENSTTRP00000010278/1-920 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000026052/1-925 LLAHEAVERP LRERWATLGE LAPSAELKQL LRAGVPHEHR PRVWRWLIRL bmy_01810T0/1-902 LLAHEAVEQP LRERWAALGE LAPSPEIKQL LRAGVPREHR PRVWKWLVRL BACU017569/1-932 LLAHEAVEQP LRERWAALGE LAPSLEIKQL LRAGVPREHR PRVWKWLGRP 651 700 ENSP00000364207/1-917 RVQHLHTPGC YQELLSRGQA REHPAARQIE LDLNRTFPNN KHFTCPTSSF ENSTTRP00000010278/1-920 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX LDLKPDFPSN KHFTCPASSF ENSBTAP00000026052/1-925 RVQHLQAPGC YQALLSRGQA CKHSAARQIE LDLNRTFPNN KHFTCPTSSF bmy_01810T0/1-902 RVQHLQGPGR YQELLSRGQA CKHPAARQIE LDLNRTFPSN KHFTCPASSF BACU017569/1-932 R--HLQGPGR YQELLSRGQA CKHPATRQIE LDLNRTFPSN KHFTCPASSF 701 750 ENSP00000364207/1-917 PDKLRRVLLA FSWQNPTIGY CQGLNRLAAI ALLVLEEEES AFWCLVAIVE ENSTTRP00000010278/1-920 -DRLRRVLL- FSWQNPAIGY CQ-LNRLAAI ALLVLDEEES AFWCLVAIVE ENSBTAP00000026052/1-925 PDKLRRVLLA FSWQNPTIGY CQGLNRLAAI ALLVLDEEES AFWCLVAIVE bmy_01810T0/1-902 PDRLRRVLLA FSWQNPAIGY CQGLNRLAAI ALLVLDEEES AFWCL----- BACU017569/1-932 PDRLRRVLLA FSWQNPAIGY CQGLNRLAAI ALLVLDEEES AFWCLVAIVE 751 800 ENSP00000364207/1-917 TIMPADYYCN TLTASQVDQR VLQDLLSEKL PRLMAHLGQH HVDLSLVTFN ENSTTRP00000010278/1-920 TIMPADYYSK TLLASQVDQR VLQDLLLEKL PKLMAHLGQH RVDLSFVTFN ENSBTAP00000026052/1-925 TIMPADYYSK TLLASQVDQR VLQDLLLEKL PRLMAHLGQR HVDLSFITFN bmy_01810T0/1-902 ---------- ------VDQR VLQDLLSEKL PKLMAHLGQR RVDLSFITFN BACU017569/1-932 TIMPADYYSK TLLASQVDQR VLQDLLSEKL PKLMAHLGQC RVDLSFITFN 801 850 ENSP00000364207/1-917 WFLVVFADSL ISNILLRVWD AFLYEGT--- --------KY NEKEILRLQN ENSTTRP00000010278/1-920 WLLVVFADSL ISNILLQVWD AFLYEGT--- --------KY NEEEILRLQD ENSBTAP00000026052/1-925 WFLVVFADSL ISNILLQVWD AFLYEGIKVV FRYALAIFKY NEEALLRLQD bmy_01810T0/1-902 WLLVVFADSL ISNILLQV-- ---------V FRYALAIFKY NEEEILRLQD BACU017569/1-932 WLLVVFADSL ISNILLQVWD AFLYEGTKVV FRYALAIFKY NEEEILRLQD 851 900 ENSP00000364207/1-917 GLEIYQYLRF FTKTISNSRK LMNIAFNDMN PFRMKQLRQL RMVHRERLEA ENSTTRP00000010278/1-920 GLEIYQYLRF FTKTICNSRK LMNIAFNDMN PFPMKQLHQL RMAHRERLEA ENSBTAP00000026052/1-925 SLEIYQYLHF FTKTICDSRK LMHIAFNDMN PFPMKQLRQL RAAHRERLEA bmy_01810T0/1-902 GLEIYQYLRF FTKTVCDSRK LMNIAFNDMN PFPKKQLRHL RMAHRERLEA BACU017569/1-932 GLEIYQYLRF FTKTICDSRK LMNIAFNDMN PFPKKQLRQL RMAHRERLEA 901 950 ENSP00000364207/1-917 ELRELEQLKA EYLERRASRR RAVSEGCASE DEVEGEA ENSTTRP00000010278/1-920 ELHELEQLKA KYLETRAAQG PAVPEGCTSE DEGEAEP ENSBTAP00000026052/1-925 ELNELEQLKA EYLETRAAQG PAVPEGSPSE DEGEAEP bmy_01810T0/1-902 ELHELEQLKA EYLETRAAQG PAVPEGCTSE DEGEAEP BACU017569/1-932 ELHELEQLKA KYLEIRAARG PAVPEGCTSE DEGEAEP