KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:27:54 2014 Check: 00 .. Name: ENSBTAP00000026055/1-941 Len: 1003 Check: 6128 Weight: 1.00 Name: bmy_10750T0/1-955 Len: 1003 Check: 7421 Weight: 1.00 Name: ENSTTRP00000012512/1-298 Len: 1003 Check: 8931 Weight: 1.00 Name: ENSP00000324827/1-695 Len: 1003 Check: 4375 Weight: 1.00 Name: BACU005065/1-749 Len: 1003 Check: 4 Weight: 1.00 // 1 50 ENSBTAP00000026055/1-941 -MTVTVVYDN SEATELCAAQ HLYLKPIAKL MINVLLPESP EPSRPVSNWE bmy_10750T0/1-955 MM-VTVVYDN SEATELCAAQ HLYLKPIAKL MISVLLPEST EPMRPFSNWE ENSTTRP00000012512/1-298 TMTVTMVYDN SEATELCAAQ HLYLKPIAKL MINVLLPEST EPMRPFSNWE ENSP00000324827/1-695 MAAATIVHDT SEAVELCPAY GLYLKPITKM TISVALPQLK QPGKSISNWE BACU005065/1-749 MAAATIVHDT SEAVELCPPY GLYLKPITKM TISVALPQLK QPGKSISNWE 51 100 ENSBTAP00000026055/1-941 VLDQLKSLIC PDQFTTVRLA KSTRDFIRFE GEAETRSLVQ ILKAKLHGKI bmy_10750T0/1-955 VLDQLKSLIC PDQFTTVRLS KSTKDFIRFE GEAETRSLVQ ILKAKLHGKI ENSTTRP00000012512/1-298 VLDQLKSLIC PDQFTTVRLS KSTKDFIRFE GEAETRSLVQ ILKAKLHGKI ENSP00000324827/1-695 VMERLKGMVQ NHQFSTLRIS KSTMDFIRFE GEVENKSLVK SFLACLDGKT BACU005065/1-749 VMERLKGMVH NHQFSTLRIS KSTMDFIRFE GEVENKSLVR SFLACLDGKT 101 150 ENSBTAP00000026055/1-941 IKLNGLETDL KVVVTD---- --AQGEWEHF PKENVATPMG DGSEEQDHDK bmy_10750T0/1-955 IKLSGLKTDL RVVATD---- --AQGEWEHF PKGK-GAPLG DASEEQDHDK ENSTTRP00000012512/1-298 IKLSGLKTDL RVVATD---- --AQGEWEHF PKEK-GAPLA DGSEEQDHDK ENSP00000324827/1-695 IKLSGFSDIL KVRAAEFKID FPTRHDWDSF FRDA-----K DMNETLPGER BACU005065/1-749 IKLSGFSDIL KVRAAEFKID FPTRHDWDSF FRDA-----K DMNETLPGER 151 200 ENSBTAP00000026055/1-941 SPNSIYFEGL PCKWFAPKGS SGEKPCEEIL RVVFESFGKI KNVDIPMLDP bmy_10750T0/1-955 SPDSIYFEGL PCKWFAPKGS SGEKPCEEIL RVVFESFGKI KNVDIPMLDP ENSTTRP00000012512/1-298 SPDSIYFEGL PCKWFAPKGS SGEKPCEEIL RVVFESFGKI KNVDIPMLDP ENSP00000324827/1-695 -PDTIHLEGL PCKWFALKES GSEKPSEDVL VKVFEKFGEI RNVDIPMLDP BACU005065/1-749 -PDTIHLEGL PCKWFALKES GSEKPSEGVL VRVFERFGEI RNVDIPMLDP 201 250 ENSBTAP00000026055/1-941 YREVITSGSF GGFNFGLQ-T FEAFIQYQES TDFLKAMKSL RGMKLMLKGD bmy_10750T0/1-955 YREVMTGGSF GGFSFGLQ-T FEAFIQYQES TDFVKAMESL RGMKLMLKGD ENSTTRP00000012512/1-298 YREVMTGGSF GGFSFGLQ-T FEAFIQ---- ---------- --MKLMLKGD ENSP00000324827/1-695 YREEMTGRNF HTFSFGGHLN FEAYVQYREY MGFIQAMSAL RGMKLMYKGE BACU005065/1-749 YREEMTGRNF HTFSFGGHLN FEAYVQYREY AGFIQAMSAL RGMKLMYKGE 251 300 ENSBTAP00000026055/1-941 DGKALACNIK VMFDTTKHFS EGAIKKRNQE RLKLQELEEE RKKAKKREEE bmy_10750T0/1-955 DGKALACNIK VMFDTTKHFS EGAIRRRNQE RLKLQELEEE RKKEKKREEE ENSTTRP00000012512/1-298 DGKALACNIK VMFDTTKHFS EGAIRRRNQE RLKLQELEEE RKKKKREEEE ENSP00000324827/1-695 DGKAVACNIK VSFDSTKHLS DASIKKRQLE RQKLQELEQQ REEQKRREKE BACU005065/1-749 DGKAVACNIK ----TVRLLA SAVCSVSDPA Q---SDLASP LCRPHRRLAN 301 350 ENSBTAP00000026055/1-941 EA-------- ---------- ---------- ---------- --KRKRKEER bmy_10750T0/1-955 EAERSMAVES RNWCSLSTVL LQNQKRKQLK ARDLKSMLVR KNKKRKEEER ENSTTRP00000012512/1-298 AESHS----- ---------- ---------- ---------- --KKRKEEER ENSP00000324827/1-695 AEERQRAEE- ---------- ---------- ---------- --RKQKELEE BACU005065/1-749 CQARGDAAVP GGDTVGLQTF PGGLEPSCF- ---------- --PKQKELEA 351 400 ENSBTAP00000026055/1-941 KVQEKRRKAR VKRRTQKERD RHRQRRQKDS AKVGAQPGSN SSKD--LEKR bmy_10750T0/1-955 KAQEKRRKAR VRRRALKERG RHRQRRQKDS AKAEARQGPN SSED--WEER ENSTTRP00000012512/1-298 KAQEKRRKA- ---------- ---------- ---------- ---------- ENSP00000324827/1-695 LERERKREEK LRKREQKQRD RELRRNQKKL EKLQAEEQKQ LQEKIKLEER BACU005065/1-749 QERERKREEK LRRREQKQRD RELRRSQKQL EKLQAEAQRK LQEKIRLEER 401 450 ENSBTAP00000026055/1-941 KIPLTQTQLE ALYLIRALLR KIALLMELTE NARRRDVEHV SLVFSCLESE bmy_10750T0/1-955 KGLLARREQE ALRLLRALLR KIE------- ---------- -------GSV ENSTTRP00000012512/1-298 ---------- ---------- ---------- ---------- ---------- ENSP00000324827/1-695 KLLLAQRNLQ SIRLIAELLS R--------- ---------- ---------- BACU005065/1-749 KLLLAQRNLQ SLRLVTELLS R--------- ---------- ---------- 451 500 ENSBTAP00000026055/1-941 EFYPRKANIA GFKAHYALGT MSGTLKKEEP NTQYLQNQEE TLKCPVSKSN bmy_10750T0/1-955 QFNPREVDVA GSKANRARGT TLGALKKEEL NTQYLQNQEE MPRYQVSKSD ENSTTRP00000012512/1-298 ---------- ---------- ---------- ---------- ---------- ENSP00000324827/1-695 ---------- ---------- ---------- ---------- ---------- BACU005065/1-749 ---------- ---------- ---------- ---------- ---------- 501 550 ENSBTAP00000026055/1-941 YKRKRKMKKK ARAHLRKSSH RLGGKKKRYS ARKEKAGKSL TDEYNKSLSC bmy_10750T0/1-955 KKRKKKKKKR ARAHLRKSSH HLGGKKLRYS ARKERTGKLL TSEYNHSLLP ENSTTRP00000012512/1-298 ---------- ---------- ---------- ---------- ---------- ENSP00000324827/1-695 ---------- ---------- --------AK AVKLREQEQK EEKLRLQQQE BACU005065/1-749 ---------- ---------- ----AKVLFA ACELGVFDLL AEAPEALGSA 551 600 ENSBTAP00000026055/1-941 EQNSLQIIMT QGQSLEKDQ- HGSNTSYSSR FVERDHSRKQ KIYETDEFID bmy_10750T0/1-955 DRNSLQIAMI QGQSLEKEDY HGSNKSYSSR LVERDHGRKQ KIYETDEFID ENSTTRP00000012512/1-298 ---------- ---------- ---------- ---------- ---------- ENSP00000324827/1-695 ERRRLQEAEL RRVEEEKER- -----ALGLQ RKERELRER- -------LLS BACU005065/1-749 AVAARLGVSS RGTELLLDA- -----CVSLK LLQVEVRREK AVYESTELAS 601 650 ENSBTAP00000026055/1-941 YLLNHYQTPK YARICLEPSH ITSTCQWKRT VLVKGNSFQI NLRKHKHRST bmy_10750T0/1-955 YLLNYYQSPK YARICLEPSH ITSKCQWQRV VHAKGSGFQI NLRKHKCHLT ENSTTRP00000012512/1-298 ---------- ---------- ---------- ---------- ---------- ENSP00000324827/1-695 ILLSKKPDDS HTHDELGVAH ADLL---QPV LDILQTV--- ---------- BACU005065/1-749 TYLARASPKS QQDMLLYTAR TTYLCWGHLA TAVRQEG--- ---------- 651 700 ENSBTAP00000026055/1-941 SLSQMQHLDR REQVQEDDLW TNL-SWDTEH ISQKKRKVDY AEECT--KKF bmy_10750T0/1-955 SLSQMQNLDR REQVQEDDSW TKIYTQDPEH KPEKRGKVDY AKECRMFKGF ENSTTRP00000012512/1-298 ---------- ---------- ---------- ---------- ---------- ENSP00000324827/1-695 ---------- ---------- ---------- ---------- SSGCVSATTL BACU005065/1-749 ---------- ---------- ---------- ---------- PVGAVAPQSM 701 750 ENSBTAP00000026055/1-941 KHHFKDTASE AGDCLSPTDD KSHLLEKTHA YQVQDPISTS QSQVSSSKKS bmy_10750T0/1-955 KHHCKDTVCE AGDRPSPTFG KSHLLEQTHA YQVQDSISTS QSQVSSPNRS ENSTTRP00000012512/1-298 ---------- ---------- ---------- ---------- ---------- ENSP00000324827/1-695 -HPLGGQPPA GAPKESPAHP EA-------- ----DGAPKS ---------- BACU005065/1-749 DARLKGQPPV SSHQLFPRGC GV-------- ----TAAPAS ELCVLGEAGC 751 800 ENSBTAP00000026055/1-941 EDFDLKLRDF LEEISSDSEC LSDNLSVNKE KKKKSVATYD SCPEKGCLDA bmy_10750T0/1-955 ADFNLELTDF LEEISSDSEC FSEILSINKE EKEKSVATHD SSPEKGSLDA ENSTTRP00000012512/1-298 ---------- ---------- ---------- ---------- ---------- ENSP00000324827/1-695 --VNGSVAEE APCKEVQSSC ---------- ----RVVPED GSPEKRC--P BACU005065/1-749 LDFKGTSPEF LTFRPVQLKK ---------- ---EAVSSKA STARAGHSPV 801 850 ENSBTAP00000026055/1-941 DEIITCDPEI MSSQQALHAE WKHDGEEKYS EYKLRKPGRR STYELRCSWL bmy_10750T0/1-955 DEIITCDPEI RSSQQTLYSE WKHE-EZKYS KYELRKPGKR SNYELRCSWL ENSTTRP00000012512/1-298 ---------- ---------- ---------- ---------- ---------- ENSP00000324827/1-695 GGVLSCIPDN NQQPKGIPAC EQNVSRKDTR SEQD------ ---------- BACU005065/1-749 DTARGCRDGK NQYLKAFGVP SEELFTVIYR DSWEYLTPAF AQGFLCLAVV 851 900 ENSBTAP00000026055/1-941 EGKNNSIRNE DSNSKEREIL APQYLFDESH HHRSSAS--D QLDTVIGKRR bmy_10750T0/1-955 EGENNSIRDE KSNSKKREIL APKYVFDKSY HHESSAS--D QLDTVTRKRR ENSTTRP00000012512/1-298 ---------- ---------- ---------- ---------- ---------- ENSP00000324827/1-695 --KCNREPSK GRGRATGDGL ADRHKRERSR ARRASSREDG RPRKERRPHK BACU005065/1-749 CLRVDRCPGT RGHSQVVPGL WPRRA---CL YPGSQVTVFD IPDVVQMAKR 901 950 ENSBTAP00000026055/1-941 QFSDSAFDHR VNYRLLQVPV TSPKTADASY LWDFPKRR-- ---EIPWRSE bmy_10750T0/1-955 RFSDSTFDQK VNYRPFHVPR TSSKSANASY LGDFPKRR-- ---EAPRKSE ENSTTRP00000012512/1-298 ---------- ---------- ---------- ---------- ---------- ENSP00000324827/1-695 KH-------- ---------- --------AY KDDSPRRRST SPDHTRSRRS BACU005065/1-749 HF-------- ---------- --------SF LED--ERIGF CEGHSPWVTG 951 1000 ENSBTAP00000026055/1-941 YNWDAGRMKR REYSGDFMLN SDSYYIRPNS LERIDR-SHL RNNFTSSFYF bmy_10750T0/1-955 HNQDARRFKR YENSEDFMLN SDNYYIRXNS QEHIDDGSYS GNNYTSSL-- ENSTTRP00000012512/1-298 ---------- ---------- ---------- ---------- ---------- ENSP00000324827/1-695 HSKDRHRRER SRERRGSASR KHSRHRRRSE RSRSRSPSRH RSTWNR---- BACU005065/1-749 DFFKDRLPEP DLCILARALH DWTGEKCSHL LGRTYQACKT GRR------- 1001 1050 ENSBTAP00000026055/1-941 QMF bmy_10750T0/1-955 --- ENSTTRP00000012512/1-298 --- ENSP00000324827/1-695 --- BACU005065/1-749 ---