KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:27:55 2014 Check: 00 .. Name: ENSP00000355053/1-1043 Len: 1048 Check: 679 Weight: 1.00 Name: ENSTTRP00000002067/1-1048 Len: 1048 Check: 4112 Weight: 1.00 Name: ENSBTAP00000026057/1-1044 Len: 1048 Check: 4359 Weight: 1.00 Name: bmy_17759T0/1-718 Len: 1048 Check: 8153 Weight: 1.00 Name: BACU009641/1-895 Len: 1048 Check: 9375 Weight: 1.00 // 1 50 ENSP00000355053/1-1043 MAMALELQAQ ASPQPEPEEL LIVKLEEDSW GSESKLWEKD RGSVSGPEAS ENSTTRP00000002067/1-1048 MAVALEARAQ ASPLPEPEEL LIVKLEEDSW RPDSQPREKD HDPVPGPEAS ENSBTAP00000026057/1-1044 EKMAVALEAR ASPQQEPEEL VIVKLEEDSW TPVSQPK-KD RDHVPGPEAS bmy_17759T0/1-718 MAVALEAGAQ ASPLPEPEEL LIVKLEEDSW RPDSQPREKD HDPVPGPEAS BACU009641/1-895 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000355053/1-1043 RQRFRQFQYR DAAGPHEAFS QLWALCCRWL RPEIRLKEQI LELLVLEQFL ENSTTRP00000002067/1-1048 RQRFRQFRYR DAAGPHEAFS QLWALCCHWL RPEIRLKEQI LELLVLEQFL ENSBTAP00000026057/1-1044 RQRFRQFQYR EAAGPHEAFS QLWALCCHWL RPEIRLKEQI LELLVLEQFL bmy_17759T0/1-718 RQRFRQFQYR DAAGPHEAFS QLWALCCHWL RPEIRLKEQI LELLVLEQFL BACU009641/1-895 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000355053/1-1043 TILPREVQTW VQARHPESGE EAVALVEDWH RETRTAGQSG LELHTEETRP ENSTTRP00000002067/1-1048 TILPREVQAW VQARHPESGE EAVALVEDWH REARAAGQRE LELCAEETRS ENSBTAP00000026057/1-1044 TILPQEAQAW VQARHPESGE EAVALVEDWH REARAAGQRE LELCAEDTRS bmy_17759T0/1-718 TILPREVQAW VQAHHPESGE EAVALVEDWH REARAAGQRE LELYAEETRS BACU009641/1-895 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000355053/1-1043 LKTGEEAQSF QLQPVDPWPE GQSQKKGVKN TCPDLPNHLN AEVAPQPLKE ENSTTRP00000002067/1-1048 LKTVKESQSF QLWTADHWPE GQSQKQWVKN PCPDLPQRLD TKMALQPLKE ENSBTAP00000026057/1-1044 LKTTKESQGC QLQPADHWPE EQSQKQWVKN SCPDLPKNLD TKMVPQPLKE bmy_17759T0/1-718 LKNMKESQSF QLWPADHWPE GQSQKQWVKN PCPDLPKHLD TKMAPQPLKE BACU009641/1-895 ---MKESQSF QRWPADHWPE GQSQKQRVKN PCPDLPKHLD TKMAPQPLEE 201 250 ENSP00000355053/1-1043 SAVLTPRVPT LPKMGSVGDW EVTAESQEAL GPGKHAEKEL CKDPPGDDCG ENSTTRP00000002067/1-1048 SAVLTPRVPT LPKMGSVGDW EVTVESQEAL GPVRHAEKEF CKDPPGDSCG ENSBTAP00000026057/1-1044 SAVLTPRVPA LPKTGSVGDW EVTAESQEAL GPDRHAEKEF CTDPPGDNCG bmy_17759T0/1-718 SAVLTPRVPT LPKMGSVGDW EVTVESQEAL GPGRHAEKEF CKDPPGDSCG BACU009641/1-895 SAVLTPRVPT LPKMGSIGDW EVTVESQEAL GPGRHAEKEF CKDPPGDSCG 251 300 ENSP00000355053/1-1043 NSVCLGVPVS KPSNTSEKEQ GPEFWGLSLI NSGKRSTADY SLDNE---PA ENSTTRP00000002067/1-1048 NGLPLGVPVS KPTIISQQEQ GPEFWGPRFV NSGQKNPEDY SWDTEQTKPA ENSBTAP00000026057/1-1044 NGLSLGVPVS KPTIIAQQEQ GPEFWGPRLV NSGKKNSADY SVDPEQTKPA bmy_17759T0/1-718 NGLPLGVPVS KPTIISQQEQ GPEFWGPRLV NSGQKNPADY SWDTEQTKPA BACU009641/1-895 NGLPLGVPVS KPTIISQQEQ GPEFWGPRLV NSGQKNPADY SWDTEQTKPA 301 350 ENSP00000355053/1-1043 QALTWRDSRA WEEQYQWDVE DMKVSGVHWG YEETKTFLAI LSESPFSEKL ENSTTRP00000002067/1-1048 QALAWRDSKA WEERYQWDVE DVKVSGVHWS YEETKTFLAI LSESPFSEKL ENSBTAP00000026057/1-1044 QALAWRDCKT WEERCPAPVE DVKVSGVHWS YEETKTFLAI LSESPFSEKL bmy_17759T0/1-718 QALAWRDSRA WEERYQWDVE DVKVSGVHWS YEETKTFLAI LSESPFSEKL BACU009641/1-895 QALAWRDSRA WEERYQWDVE DVKVSGVHWS YEETKTFLAI LSESPFSEKL 351 400 ENSP00000355053/1-1043 RTCHQNRQVY RAIAEQLRAR GFLRTLEQCR YRVKNLLRNY RKAKSSHPPG ENSTTRP00000002067/1-1048 RTCHQNRQVY RAIAERLRAQ GFLRTLEQCR YRVKNLLRNY RKAKSSHPPG ENSBTAP00000026057/1-1044 RTCHQNRQVY RAIAERLRAR GFLRTLEQCR YRVKNLLRNY RKAKSSHPPG bmy_17759T0/1-718 RTCHQNRQVY RAIAERLRAQ GFLRTLEQCR YRVKNLLRNY RKAKSSHPPG BACU009641/1-895 RTCHQNRQVY RAIAERLRAQ GFQRTLEQCR YRVKNLLRNY RKAKSSHPPG 401 450 ENSP00000355053/1-1043 TCPFYEELEA LVRARTAIRA TDGPGEAVAL PRLGYSDAEM DEQEEGGWDP ENSTTRP00000002067/1-1048 TCPFYEELEA LVRARTAIRA SDGPGEAVAL PRLGDSDMEV DEQEEGGWEP ENSBTAP00000026057/1-1044 TCPFYEELEA LVRARTAIRA SDGPGETVAL PRLGDSDMEV DEQEEGGWEP bmy_17759T0/1-718 TCPFYEELEA LVRARTAIRA SDGPGEAVAL PRLGDSDMEV DEQEEGGWEP BACU009641/1-895 TCPFYEELEA LVRARTAIRA SDGPGEAVAL PRLGDSDMEV DEQEEGGWEP 451 500 ENSP00000355053/1-1043 EEMAEDCNGA G--LVNVEST QGPRIAGAPA LFQSRIAGVH WGYEETKAFL ENSTTRP00000002067/1-1048 EETTDDCNGD DSHLATEEFV HRPRIPGGPA LLQSRIAGVH WGYEETKAFL ENSBTAP00000026057/1-1044 EETADDCNGD D---VATESI QGPGIPGGPA LLQSRIAGVH WGYEETKAFL bmy_17759T0/1-718 EETTDDCNGD DSHLATEEFV HGPRIPGGPA LLQSRIAGVH WGYEETKAFL BACU009641/1-895 EETTDDCNGD DSHLATEEFV HGPRIPGGPA LLQSRIAGVH WGYEETKAFL 501 550 ENSP00000355053/1-1043 AILSESPFSE KLRTCHQNSQ VYRAIAERLC ALGFLRTLEQ CRYRFKNLLR ENSTTRP00000002067/1-1048 TILSESPFSE KLRTCHQNSQ VYRAXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000026057/1-1044 TILSESPFSE KLRTCHQNSQ VYRAIAERLC AQGFLRTLEQ CRYRFKNLLR bmy_17759T0/1-718 TILSESPFSE KLHTCHQNSQ VYRAIAERLC AQGFLRTLEQ CRYRFKNLLR BACU009641/1-895 TILSESPFSE KLRTCHQNSQ VYRAIAERLC AQGFLRTLEQ CRYRFKNLLR 551 600 ENSP00000355053/1-1043 SYRKAKSSHP PGTCPFYEEL DSLMRARAAV RAMGTVREAA GLPRCGQSSA ENSTTRP00000002067/1-1048 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000026057/1-1044 SYRKAKSSHP PGTCPFYEEL DSLMRARTAV RDMGTGGEAA GLPTSDQSST bmy_17759T0/1-718 SYRKAKSSHP PGTCPFYEEL DSLMRARTAV RDMGTSKEAV GLPTSGESGT BACU009641/1-895 SYRKAKSSHP PGTCPFYEEL DLLMRARTAV RDMGTSKEAV GLPTSGESGT 601 650 ENSP00000355053/1-1043 ETDAQEAWGE VANEDAVKPS TLCPKAPDMG FEMRHEDEDQ ISEQDIFEGL ENSTTRP00000002067/1-1048 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX FEMRHEDEDQ ISEQDIFEDL ENSBTAP00000026057/1-1044 EVVSQEAWDE MAGEDVIRPP TPSPKTSDTG FEMRCEDEDQ IPEDDLFCNL bmy_17759T0/1-718 QVVNQEAWDE MAGEDAVRPP TPGPKTPDTG FEMRHEDEDQ ISEQDIFEDL BACU009641/1-895 QVVNQEAWDE MAGEDAVRPP TPGPKTPDTG FELRHEDEDQ ISEQDIFEDL 651 700 ENSP00000355053/1-1043 PGALSKCPTE AVCQPLDWGE DSENENEDEG QWGNPSQEQW QESSSEEDLE ENSTTRP00000002067/1-1048 PGALSKCTAE DDCYPHDWGE DSENENEGKG QWGNPSQDQW EECSSEEDLE ENSBTAP00000026057/1-1044 PRALSKCTAG DDCYPHDSGE DSENENEGKG QWGDPSQEQW EECSSEEDLE bmy_17759T0/1-718 PGALSKCTAE DDCYPHDWGE DSENENEGKG QWGNPSQDQW EECSSEEDLE BACU009641/1-895 PGALSKCTAE DDCYPHDWGE DSEDENEGKG QWGNPSQDQW EECSSEEDLE 701 750 ENSP00000355053/1-1043 KLIDHQGLYL AEKPYKCDTC MKSFSRSSHF IAHQRIHTGE KPYKCLECGK ENSTTRP00000002067/1-1048 KLIDHQGLYL AEKPFKCDTC VKRFSRNSQL IAHQRIHTGE RPYKCLECGK ENSBTAP00000026057/1-1044 KLIDHQGLYL AEKPYKCDMC VKTFSRNSQL TTHQRIHTGE KPYKCLECGK bmy_17759T0/1-718 KLIDHQGLYL AEKPYKCD-- ---------- ---------- ---------- BACU009641/1-895 KLIDHQGLYL AEKPYKCDTC VKRFSRNSQL IAHQRIHTGE RPYKCLECGK 751 800 ENSP00000355053/1-1043 NFSDRSNLNT HQRIHTGEKP YKCLECGKSF SDHSNLITHQ RIHTGEKPYK ENSTTRP00000002067/1-1048 SFSDRSNFNT HQRIHTGEKP YKCLECGKSF SDHSNLITHQ RTHTRVKPYK ENSBTAP00000026057/1-1044 SFSDRSNFNT HQRIHTGEKP YECLECGKSF SDLSNLITHQ RTHMKVKPYK bmy_17759T0/1-718 ---------- ---------- ---------- ---------- ---------- BACU009641/1-895 SFSDRSNFNT HQRIHTGEKP YKCLECGKSF SDHSNLIAHQ RTHTRVKPYK 801 850 ENSP00000355053/1-1043 CGECWKSFNQ SSNLLKHQRI HLGGNPDQCS EPGGNFAQSP SFSAHWRNST ENSTTRP00000002067/1-1048 CGECWEGFTQ SSNLLKHQRI HLGGNPDHCG EPGKNSGQSP SFSAHWRNSA ENSBTAP00000026057/1-1044 CEECWESFIQ SSDLLKHQGI HLGGNSDHCR EPGENSGQSP SFSAHWRNST bmy_17759T0/1-718 ---------- ---------- ---------- ---------- ---------- BACU009641/1-895 CGECWESFTQ SSNLLKHQRI HLGGNRDHCG EPGKNSGQSP SCSAHWRNST 851 900 ENSP00000355053/1-1043 EETAPEQPQS ISKDLNSPGP HSTNSGEKLY ECSECGRSFS KSSALISHQR ENSTTRP00000002067/1-1048 EETSLEQTQS ASKNLNSPGL QSTNSGDKLY QCSECGRSFS KSSALISHQR ENSBTAP00000026057/1-1044 EGTNPEQPHS ASKNANSPGP QSTHAGEKLY QCSECGRSFS KSSALISHQR bmy_17759T0/1-718 ---------- ---------- ---------- ---------- ---------- BACU009641/1-895 EETSPEQTQS ASKNLNSPGP QSTNSGDKLY QCSECGRSFS KSSALISHQR 901 950 ENSP00000355053/1-1043 IHTGEKPYEC AECGKSFSKS STLANHQRTH TGEKPYKCVD CGKCFSERSK ENSTTRP00000002067/1-1048 IHTGEKPYGC AECGKSFSKS STLANHQRTH TGEKPYECAD CGKCFGERSK ENSBTAP00000026057/1-1044 IHTGEKPYEC AECGKSFSKS STLANHQRTH TGEKPYECMD CGKCFGERSK bmy_17759T0/1-718 ---------- ---------- ---------- ---------- ---------- BACU009641/1-895 IHTGEKPYGC AECGKSFSKS STLANHQRTH TGEKPYECTD CGKCFGERSK 951 1000 ENSP00000355053/1-1043 LITHQRVHTG EKPYKCLECG KFFRDRSNLI THQRIHTGEK PYKCRECGKC ENSTTRP00000002067/1-1048 LITHQRVHTG EKPYRCLECG KFFRDRSNLI THQRIHTGEK PYKCRECGKC ENSBTAP00000026057/1-1044 LITHQRVHTG EKPYKCLECG KFFRDRSNLI THQRIHTGEK PYKCRECGKC bmy_17759T0/1-718 ---------- ---------- ---------- ---------- ---------- BACU009641/1-895 LITHQRVHTG EKPYRCLECG KFFRDRSNLI THQRIHTGEK PYKCRECGKC 1001 1050 ENSP00000355053/1-1043 FNQSSSLIIH QRIHTGEKPY KCTECGKDFN NSSHFSAHRR THAGGKAS ENSTTRP00000002067/1-1048 FNQSSSLIIH QRIHTGEKPY KCMECGKDFN NSSHFSAHRR THAGGKVP ENSBTAP00000026057/1-1044 FNQSSSLIIH QRIHTGEKPY KCTECGKDFN NSSHFSAHRR THAGGKAS bmy_17759T0/1-718 ---------- ---------- ---------- ---------- -------- BACU009641/1-895 FNQSSSLIIH QRIHTGEKPY KCTECGKDFN NSSHFSAHRR THAGGKAS