KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:27:56 2014 Check: 00 .. Name: bmy_11748T0/1-486 Len: 539 Check: 3586 Weight: 1.00 Name: ENSTTRP00000015785/1-339 Len: 539 Check: 8938 Weight: 1.00 Name: ENSP00000336528/1-473 Len: 539 Check: 556 Weight: 1.00 Name: ENSBTAP00000026059/1-420 Len: 539 Check: 5995 Weight: 1.00 // 1 50 bmy_11748T0/1-486 -------MNV AGQVSSPAPL LQPAPGPLGK PS-------- ---------- ENSTTRP00000015785/1-339 ---------- ---------- ---------- ---------- ---------- ENSP00000336528/1-473 MTVTRTHHFK EGSLRAPAIP LHSAAAELAS NHPRGPEANL EVRPKESWNH ENSBTAP00000026059/1-420 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_11748T0/1-486 ---THRQKPE EPPPVPLLWP RPNSEAKAGP TEGVTSVRVG RGQGARVPHA ENSTTRP00000015785/1-339 ---VTVTGPQ VLSEGSLL-- -PATHHSPGA A--------- ---------- ENSP00000336528/1-473 ADFVHCEDTE SVPGKPSV-- -NADEEVGGP Q--ICRVCGD KATGYHFNVM ENSBTAP00000026059/1-420 ---MHRGEAD SASTNPII-- -GADEEEECP Q--ICRVCGD KATGYHFNVM 101 150 bmy_11748T0/1-486 AYLVLFVLSQ HSHETQRPAL VPFPEGHLRD HPEGPAAVPG LPPAHAPGER ENSTTRP00000015785/1-339 -----LALPH TAMKRNAQLW CPVQK-TYE- ---------- ---------- ENSP00000336528/1-473 TCEGCKGFFR RAMKRNARLR CPFRKGACE- ---------- ---------- ENSBTAP00000026059/1-420 TCEGCKGFFR RAMKRNAQPR CPFRKGTCE- ---------- ---------- 151 200 bmy_11748T0/1-486 LEERQHRRRR RAWAREPEQA RAAGCVRAHA QTGGRRPEAR YLRLLLAIPA ENSTTRP00000015785/1-339 -ITRKTRRQC RA-------- ---CRLRKFL ESGQ------ ---------E ENSP00000336528/1-473 -ITRKTRRQC QA-------- ---CRLRKCL ESGMKK---- ---------E ENSBTAP00000026059/1-420 -ITQKTRRQC QA-------- ---CRLRKCL ESGMRK---- ---------E 201 250 bmy_11748T0/1-486 VIMSDTAVEQ KRALIRRKKR EQIGTQPPGA QGLTEEQQMM IRELITAQMK ENSTTRP00000015785/1-339 MIMSDVAVEQ KRALIRRKRR EQIGTQPPGA KALTEDQRMM IRELITAQVK ENSP00000336528/1-473 MIMSDEAVEE RRALIKRKKS ERTGTQPLGV QGLTEEQRMM IRELMDAQMK ENSBTAP00000026059/1-420 MIMSDAAVEQ RRALIRRKKR ERIETRPLGA KGLTEEQQMM IRELTTAQMN 251 300 bmy_11748T0/1-486 TSDSTFTHFK NFRLMSQLPE VLSSAHK--- ---IRSLCRL SQVKKLPSGA ENSTTRP00000015785/1-339 TSDGIFTRFK NFR----LPE VLSRVHK-SE SLQTQSNEEA AKWCKIREDL ENSP00000336528/1-473 TFDTTFSHFK NFR----LPG VLSSGCELPE SLQAPSREEA AKWSQVRKDL ENSBTAP00000026059/1-420 TFDSTFVHFK NFR----LPD VLSSGRQIPE PLQIQSREEA AKWRKIREDL 301 350 bmy_11748T0/1-486 RSGKIYVHCG GKTAASGTTS PQPTIVGKRS LPCCPTWLTR QPTCSKASST ENSTTRP00000015785/1-339 RSVKASRQLR GEDGSIWNYK PAADNSGKEI SSLLPHVADT STYVFKGIIN ENSP00000336528/1-473 CSLKVSLQLR GEDGSVWNYK PPADSGGKEI FSLLPHMADM STYMFKGIIS ENSBTAP00000026059/1-420 CSMKLSLQLR GEDGSVWNYK PPADNGGKEI FSLLPHIADV STYMFKGIIN 351 400 bmy_11748T0/1-486 LPKSFSYFRD LLIEDQISLL KGATFELCQL RFNTVFNAET RTWECGQLSY ENSTTRP00000015785/1-339 FAKVILHFRD LLIEDQISLL KADAFELCQL RFNTMFNAET RTWECGQLSY ENSP00000336528/1-473 FAKVISYFRD LPIEDQISLL KGAAFELCQL RFNTVFNAET GTWECGRLSY ENSBTAP00000026059/1-420 FAKVISYFRD LPIEDQISLL KGAAFELCQL RFNTVFNAET RTWECGRLSY 401 450 bmy_11748T0/1-486 CLETLPVPER CLSALAEGGF QQLLLEPVLK FHYLLKKLQR HKEECRLL-- ENSTTRP00000015785/1-339 CLE------- -----PAGGF QQLLLEPVLK FHYMRKKLQL HKEEYVLMQA ENSP00000336528/1-473 CLED------ -----TAGGF QQLLLEPMLK FHYMLKKLQL HEEEYVLMQA ENSBTAP00000026059/1-420 CVED------ -----PAGGF QQLLLEPVLK FHYMLKKLQL HKEEYVLMQA 451 500 bmy_11748T0/1-486 ---------- -------DQL QKRFVITLKA YIECNRPRPA HWFLFLKILA ENSTTRP00000015785/1-339 ISLFSPMLPL VAYR------ QEWFAITLKA YIKCNWPRPA H--------- ENSP00000336528/1-473 ISLFSPDRPG VLQHRVVDQL QEQFAITLKS YIECNRPQPA HRFLFLKIMA ENSBTAP00000026059/1-420 ISLFSPDRPG VVQRLVVDQL QERFAMTLKA YIEFNRPQPA HRFLFLKIMA 501 550 bmy_11748T0/1-486 MLAELRSINV QHTQRLLRIQ DIHPFATPLT QKLFSITNG ENSTTRP00000015785/1-339 ---------- ---------- ---------- --------- ENSP00000336528/1-473 MLTELRSINA QHTQRLLRIQ DIHPFATPLM QELFGITGS ENSBTAP00000026059/1-420 ILTELRSLSA EHTQQLLRIH DVHPFATPLM QELFSTTNG