KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:27:57 2014 Check: 00 .. Name: ENSTTRP00000011233/1-602 Len: 699 Check: 3483 Weight: 1.00 Name: ENSP00000395465/1-650 Len: 699 Check: 685 Weight: 1.00 Name: ENSBTAP00000026068/1-626 Len: 699 Check: 5623 Weight: 1.00 Name: bmy_04283T0/1-625 Len: 699 Check: 2434 Weight: 1.00 Name: BACU006351/1-630 Len: 699 Check: 3990 Weight: 1.00 // 1 50 ENSTTRP00000011233/1-602 ---------- ---------- ---MSTSQDQ SG-------- --------CS ENSP00000395465/1-650 -------MGA QLTTFALAGA VRRMNTFQDQ SG-------- --------SS ENSBTAP00000026068/1-626 ---------- ---------- ---MSTSQDQ SG-------- --------CS bmy_04283T0/1-625 ---------- ---------- ---MSTSQDQ SG-------- --------CS BACU006351/1-630 MVLATLATSC NAQCYIISNQ NSTPNKCKDL NGVIHPLNSK WKTENCEECT 51 100 ENSTTRP00000011233/1-602 SNKEPLLRCC DARR---DLE LAIGGVLRAE QQIKDNLRE- --------VK ENSP00000395465/1-650 SNREPLLRCS DARR---DLE LAIGGVLRAE QQIKDNLRE- --------VK ENSBTAP00000026068/1-626 TSREPLLRCC DARR---DLE LAIGGVLRAE QQIKDNLRE- --------VK bmy_04283T0/1-625 SNKEPHLRCC DARR---DLE LAIGGVLRAE QQIKDNLRE- --------VK BACU006351/1-630 CDQGGIH-CC NTAAVPVDYD TNKCQIIFNK ETCTYSVVEQ EDPGKTCAVK 101 150 ENSTTRP00000011233/1-602 AQIHSCISRH LECLRSREVW LYEQVDLIYQ LKEETLQQQA QQLYWLLGQF ENSP00000395465/1-650 AQIHSCISRH LECLRSREVW LYEQVDLIYQ LKEETLQQQA QQLYSLLGQF ENSBTAP00000026068/1-626 AQIHSCISRH LECLRSREVW LYEQVDLIYQ LKEETLQQQV QQLYWLLGQF bmy_04283T0/1-625 AQIHSCISRH LECLRSREVW LYEQVDLIYQ LKEETLQQQA QQLYWLLGQF BACU006351/1-630 AQIHSCISRH LECLRSREVW LYEQVDLIYQ LKEETLQQQA QQLYWLLGQF 151 200 ENSTTRP00000011233/1-602 NCLIHQLECT QNKDLANQVS VCLERLGSLT LKPEDSTVLL FEADITALRQ ENSP00000395465/1-650 NCLTHQLECT QNKDLANQVS VCLERLGSLT LKPEDSTVLL FEADTITLRQ ENSBTAP00000026068/1-626 NCLIHQLECT QNKDLANQVS ACLERLGSLT LKPEDSTALL FEADITALRQ bmy_04283T0/1-625 NCLIHQLECT QNKDLANQVS VCLERLGSLT LKPEDSTVLL FEADITALRQ BACU006351/1-630 NCLIHQLECT QNKDLANQVS VCLERLGSLT LKPEDSTVLL FEADITALRQ 201 250 ENSTTRP00000011233/1-602 AITTFGSLKT IQIPEHLMAH ASSSNIGPFL EKRSYIALPE -QKSASSTTA ENSP00000395465/1-650 TITTFGSLKT IQIPEHLMAH ASSANIGPFL EKRGCISMPE -QKSASGIVA ENSBTAP00000026068/1-626 AITTFGSLKT IQIPEHLMAH ASSSNIGSFL EKRGYIPLPE -QKSASSTTA bmy_04283T0/1-625 AITTFGSLKT IQIPEHLMAH ASSSNIGPFL EKRGYIALPE QQKSASSTTS BACU006351/1-630 AITTFGSLKT IQIPEHLMAH ASSSNIGPFL EKRGYIALPE ---------- 251 300 ENSTTRP00000011233/1-602 VPLSEWLLGS KPASSRQTPY IPSTNLQDWL TQKQTLENSQ TSARACNFFS ENSP00000395465/1-650 VPFSEWLLGS KPASGYQAPY IPSTDPQDWL TQKQTLENSQ TSSRACNFFN ENSBTAP00000026068/1-626 APLSEWLLGS KPAVGHQAPY LPSTNLQDWL NHKQTLENSQ TSARACSFLN bmy_04283T0/1-625 VPLSEWLLGS KPASSRQAPY IPSTNLQDWL TQKQTLENSQ TSTRACNFFS BACU006351/1-630 ---------- ---------- ---------- ---------Q TSARACNFFS 301 350 ENSTTRP00000011233/1-602 KVWGNLKGLE NWLHK----- -SEKPSYQKC NSHSTTSSYS IEIEKVGDLE ENSP00000395465/1-650 NVGGNLKGLE NWLLK----- -SEKSSYQKC NSHSTTSSFS IEMEKVGDQE ENSBTAP00000026068/1-626 KVWGNLKGLE NWLHKSQQQE VSEKPSFQKS NSYSTTSSYS MEIEKVGDLE bmy_04283T0/1-625 NVWGNRKGLE NWLHKSQQQE VSEKPSYQKC NSYSTTSSYS IEFEKVGDLE BACU006351/1-630 NVWGNLKGLE NWLHKSQKQE VSEKPSYQKC NSYSTTSSYS IEIEKVGDLE 351 400 ENSTTRP00000011233/1-602 LLDQDEMELS DWLVTPQESH -LEKP-NCSC E--SEKFKLL SK----SYSV ENSP00000395465/1-650 LPDQDEMDLS DWLVTPQESH KLRKPENGSR E-TSEKFKLL FQ----SYNV ENSBTAP00000026068/1-626 PLDQDEMDLS DWLVTPQESH KLEKPENGGC ETTSEKFKLL FQVFHESYNV bmy_04283T0/1-625 LLDQDEMELS DWLVTPQESH KLEKAGNGSC E-TSEKFKLL FQVFQESYSV BACU006351/1-630 LLDQDEMELS DWLVTPQESH KLEKAGNGSC E-TSEKFKLL FQVFQESYSV 401 450 ENSTTRP00000011233/1-602 -DWLVKPDSC -NCQ-NHLKE I---NLG--L CLNDHLEXXX XXXXXXXXXX ENSP00000395465/1-650 NDWLVKTDSC TNCQGNQPKG VEIENLGNLK CLNDHLEAKK PLSTPSMVTE ENSBTAP00000026068/1-626 NDWLVKSDSC TYCQGNQPKG VEIENLGNLK CLNDHLEAKK PLSTPSLTTE bmy_04283T0/1-625 NDWLVKPDSC TNCQGNQPKG VEIENLGNLK CLNDHLEAKK PLSTPSVITE BACU006351/1-630 NDWLIKPDSC TNCQGNQPKG VEIENLGNLK CLNDHLEAKK PLSTPSVITE 451 500 ENSTTRP00000011233/1-602 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000395465/1-650 DWLVQNHQDP CKVEEVCRAN EPCTSFAECV CDENCEKEAL YKWLLKKEGK ENSBTAP00000026068/1-626 DWLVQNHQDP YKVEEVCKAN EPCTSFAECV CDENCEKEAL CKWLLKKEGK bmy_04283T0/1-625 DWLVQNHQDP YKVEEVCKAN EPCTSFAECV CDENCEKEAL CKWLLKKEGK BACU006351/1-630 DWLVQNHQDP YKVEEVCKAN EPCTSFAECV CDENCEKEAL CKWLLKKEGK 501 550 ENSTTRP00000011233/1-602 XXXXXXXXXX XXXXXXXXXX XXXXXX-XXX XXXXXXXXXX MASSRIADSF ENSP00000395465/1-650 DKNGMPVEPK PEPEKHKDSL NMWLCP-RKE VIEQTKAPKA MTPSRIADSF ENSBTAP00000026068/1-626 DKNGMPVDPK PEPGKHKDSL NTWLSPSGRE AAEQARAPQA TAAG-VADSF bmy_04283T0/1-625 DKNGMPVEPK PEPEKHKDSL NMWLCPSRRE ATEQAKAPKA MASSRIADSF BACU006351/1-630 DKNGMPVEPK PEPEKHKDSL NMWLCPSRRE ATEQAKAPKA MASSRIADSF 551 600 ENSTTRP00000011233/1-602 QVIRNSPLSE WLITPSCKEG CP-KEVPLRE DRAGIPKLTS HLATSWCPFN ENSP00000395465/1-650 QVIKNSPLSE WLIRPPYKEG SP-KEVPGTE DRAGKQKFKS PMNTSWCSFN ENSBTAP00000026068/1-626 QVIRSSPLSE WLMTPSHKEG CPNKEAPLTE DRAGKQKLTS PLATAWCPFN bmy_04283T0/1-625 QVIRNSPLSE WLITPSCKEG CP-KEVPLRE DRAGIPKLTS HLATSWCPFN BACU006351/1-630 QVIRNSPLSE WLITPSCKEG CP-KEVPLRE DRAGIPKLTS HLATSWCPFN 601 650 ENSTTRP00000011233/1-602 TADWVLPGKK TGNLSQLSSG EDKWLLR-KA KEVLLNSPLQ EEHSFPPDRY ENSP00000395465/1-650 TADWVLPGKK MGNLSQLSSG EDKWLLRKKA QEVLLNSPLQ EEHNFPPDHY ENSBTAP00000026068/1-626 TADWVLPAKK TGNLSQLSSG EDKWLLRKKA KGVLLDSPLQ EEHSFPPDRY bmy_04283T0/1-625 TADWVLPGKK TGNLSQLSSG EDKWLLR-KA KEVLLNSPLQ EERSFPPDRY BACU006351/1-630 TADWVLPGKK TGNLSQLSSG EDKWLLR-KA KEVLLNSPLQ EERSFPPDRY 651 700 ENSTTRP00000011233/1-602 GLPAVCDLFA CMQLKVDKEK WLYRTPLQM- ---------- --------- ENSP00000395465/1-650 GLPAVCDLFA CMQLKVDKEK WLYRTPLQAY FKMNFQDVTV GNFQIPCGF ENSBTAP00000026068/1-626 GLPAVCDLFA CMQLKVDKEK WLYRTPLQM- ---------- --------- bmy_04283T0/1-625 GLPAVCDLFA CMQLKVDKEK WLYRTPLQM- ---------- --------- BACU006351/1-630 GLPAVCDLFA CMQLKVDKEK WLYRTPLQVG TCH------- ---------