KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:27:57 2014 Check: 00 .. Name: ENSP00000338010/1-538 Len: 556 Check: 7683 Weight: 1.00 Name: ENSBTAP00000026072/1-531 Len: 556 Check: 5521 Weight: 1.00 Name: ENSTTRP00000009038/1-540 Len: 556 Check: 9489 Weight: 1.00 Name: bmy_00811T0/1-530 Len: 556 Check: 4670 Weight: 1.00 Name: BACU011885/1-540 Len: 556 Check: 7173 Weight: 1.00 // 1 50 ENSP00000338010/1-538 MPRGWAAPLL LLLLQGGWGC PDLVCYTDYL QTVICILEMW NLHPSTLTLT ENSBTAP00000026072/1-531 MPCAWAATLL LLMLQGTWGC SNLVCYTDYI ETITCILDTW ARHPDSLTLT ENSTTRP00000009038/1-540 MLCGWAAPLL LLMLQGAWGC SDLVCYTDYI QTVTCILKTR APHPGTLTLT bmy_00811T0/1-530 ---------- ------ACGC SDLICYTDYI QTVTCILETW ALHPGTLTLT BACU011885/1-540 MLCGWAAPLL LLMLQGACGC SDLVCYTDYI QTVTCILETW ALHPGTLTLT 51 100 ENSP00000338010/1-538 WQDQYEELKD EATSCSLHRS AHNATHATYT CHMDVFHFMA DDIFSVNITD ENSBTAP00000026072/1-531 WHDTYGELED EVTSCSLLRS THNATHVEYT CHMNVFRLMA DDFFNVSMTD ENSTTRP00000009038/1-540 WQDSYGELED EVTSCSLCWS THNATHAEYT CHMDVLQYMA DDVFSVNMTD bmy_00811T0/1-530 WQDSYGELED EVTSCSLRWS THNATHAEYT CHMDVLQFMA DDVFTVSMTD BACU011885/1-540 WQDSYGELED EVTSCNLCWS THNATHAEYT CHMDVLQFMA DDVFSVNMTD 101 150 ENSP00000338010/1-538 QSGNYSQECG SFLLAESIKP APPFNVTVTF SGQYNISWRS DYEDPAF--- ENSBTAP00000026072/1-531 PSGNYSQECG SFIVAASIKP SPPFNVTVNF SGYYNVSWSS SSS---FSPS ENSTTRP00000009038/1-540 HSGNHSQECG SFVLAKSIKP SPPFNVTVTF SGHYNISWSS DYN---L--- bmy_00811T0/1-530 HSGNHSQECG SFILAKSIKP SPPFNVTVTF SGHYNISWSS NYN---V--- BACU011885/1-540 QSGNHSQECG SFVLAKSIKP SPPFNVTVTF SGQYNISWSS NYN---F--- 151 200 ENSP00000338010/1-538 ---YMLKGKL QYELQYRNRG DPWAVSPRRK LISVDSRSVS LLPLEFRKDS ENSBTAP00000026072/1-531 DRVYALKDKL QYELRYRKVG EPWAQSPGRK LISEDSRSVF LLPLEFHSGS ENSTTRP00000009038/1-540 ---YALKGKL QYELRYRKLG DPWALSPGRK LISVDSRSVS LLPLEFHKGS bmy_00811T0/1-530 ---YALKGKL QYELRYRKLG DPWALSPRKK LISVDSRSVS LLPLEFHKGS BACU011885/1-540 ---YALKGKL QYELRYRKLG DPWALSPGKK LISVDSRSVS LLPLEFHKGS 201 250 ENSP00000338010/1-538 SYELQVRAGP MPGSSYQGTW SEWSDPVIFQ TQSEELKEGW NPHLLLLLLL ENSBTAP00000026072/1-531 SYELQVRAGP QPGSTFQGTW SEWSDPVVFH TQPEERKGDL YLHLVPIPLI ENSTTRP00000009038/1-540 SYELQVRAGP QPGSSFQGTW SEWSDPVVFH TQPEEIKGDL YPHLLPI-LV bmy_00811T0/1-530 SYELQMRAGP QPGSSFQGTW SEWSDPVIFH TQPEEIKGDL YPQLLPI-LV BACU011885/1-540 SYELQVRAGP QPGSSFQGTW SEWSDPVVFH TQPEEIKGDL YPQLLPI-LV 251 300 ENSP00000338010/1-538 VIVFIPAFWS LKTHPLWRLW KKIWA-VPSP ERFFMPLYKG CSGDFKKWVG ENSBTAP00000026072/1-531 LVCLIFVFLG LKV--PWRPW EKVWLQVSSP KPFFQPLYVG HSGDFKKWVG ENSTTRP00000009038/1-540 LACLVLVILG PKIHQAWRLW KNVWVQVPSP EPFFQPLYVG HSGDFKKWVG bmy_00811T0/1-530 LVCLILVFLG LKIHLPWRLW KKVWVQVPSP EPFFQPLYMG HSGDFKKWVG BACU011885/1-540 LVCPILVFLG LKIHLPWRLW KKVWVQVPSP EPFFQPLYMG HSGDFKKWVG 301 350 ENSP00000338010/1-538 APFTGSSLEL GPWSPEVPST LEVYSCHPPR SPAKRLQ--- ---LTELQEP ENSBTAP00000026072/1-531 TPFTASSLEL RPWSPGVHLA LEMCSPCPPQ GVVKGLV--- ---PTELPEP ENSTTRP00000009038/1-540 TPFTASSLEL RSWSPGVPLS LEMHSQCLPQ TAAKGLV--- ---PTELPEP bmy_00811T0/1-530 TPFTASSLEL RSWSPGVPLS LEMHSQCPXQ TAAQGLVPTE LPEPTELPEP BACU011885/1-540 TPFTASSLEL RSWSPGVPLS LEMHSQCPPQ TAAKGLV--- ---PTELPEP 351 400 ENSP00000338010/1-538 AELVESDGVP KPSFW----P TAQNSGGSAY SEERDRPYGL VSIDTVTVLD ENSBTAP00000026072/1-531 TDLVEADGVP EPGSWGPVPS TAGSLGSSVY SQEKDRLYGL VSIDTVTVVD ENSTTRP00000009038/1-540 PDLVEADGVL EPGSWGPAHS TAGSLGSSAH SQERDRPYGL VSIDTVTVVD bmy_00811T0/1-530 PDLVEADGVL EPGSWGPARS TAGSLGSSAH SQERDRPYGL VSIDTVTVVD BACU011885/1-540 PDLVEADGVL EPGSWGPARS TAGSLGSSAH SQERDRPYGL VSIDTVTVVD 401 450 ENSP00000338010/1-538 AEGPCTWPCS CEDDGYPALD LDAGLEPSPG LEDPLLDAGT TVLSCGCVSA ENSBTAP00000026072/1-531 AEGLCGWPCT CGDDGYPALN LDTGLEPGPD TEDRLLSTGT TILSCGCVSA ENSTTRP00000009038/1-540 AEGLCTWPCT CGDDGYPALN LDTSLEPGPG TEDSLPGTGA TVLSCGCVSA bmy_00811T0/1-530 AEGLCAWPCT CGDDGYPALN LDTSLEPGPG TEDSLLGTGA TVLSCGCVSA BACU011885/1-540 AEGLCAWPCT CGDDGYPALN LDTGLEPGPG TEDSLLGTGA TVLSCGFVSA 451 500 ENSP00000338010/1-538 GSP-GLGGPL GSLLDRLKPP LADGEDWAGG LPWGGRSPGG VSESEAGSPL ENSBTAP00000026072/1-531 GGPMRP---- GSLLDRLRLS HEDEADWTPG P--------- -SDSEAGSPP ENSTTRP00000009038/1-540 SGPAGPGDPL GSLLGRIKLH LKDEEGWAPG PPWDGGSPRG VSDSEAGSPP bmy_00811T0/1-530 SGPAGPGGPL GSLLDRIKLH LKDEEGWAPG PPWDGGSPRG VSDSEAGSPP BACU011885/1-540 SGPAGPGGPL GSLLDRIKLH LKDEEGWAPG PPWDGGSPQG VLDSEAGSPP 501 550 ENSP00000338010/1-538 AGLDMDTFDS GFVGSDCSSP VECDFTSPGD EGPPRSYLRQ WVVIPPPLSS ENSBTAP00000026072/1-531 VGLDMNTFDS GFADSDCGSP VESDFSSPRD EEPPRSYLRQ WVVMAPPPTP ENSTTRP00000009038/1-540 AGLDMDTFDS GFVDSDCGSP VEHDFSSPRD EGPPRSYLRQ WVVMAPPPAG bmy_00811T0/1-530 AGLDMDTFDS GFADSDCGSP VEHDFSSPRD EGPPRSYLRQ WVVTAPPPAG BACU011885/1-540 AGLDMDTFDS GFADSDCGSP VEHDFSSPRD EGPPRSYLRQ WVVTAPPPAG 551 600 ENSP00000338010/1-538 PGPQAS ENSBTAP00000026072/1-531 PGSQAS ENSTTRP00000009038/1-540 PGPQAS bmy_00811T0/1-530 PGPQAS BACU011885/1-540 PGPQVS