KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:27:59 2014 Check: 00 .. Name: ENSP00000346964/1-1017 Len: 1026 Check: 7651 Weight: 1.00 Name: ENSBTAP00000026111/1-904 Len: 1026 Check: 1533 Weight: 1.00 Name: ENSTTRP00000010971/1-1017 Len: 1026 Check: 3062 Weight: 1.00 Name: bmy_07094T0/1-746 Len: 1026 Check: 4395 Weight: 1.00 Name: BACU015008/1-626 Len: 1026 Check: 2356 Weight: 1.00 // 1 50 ENSP00000346964/1-1017 MDLIRGVLLR LLLLASSLGP GAVSLRAAIR KPGKVGPPLD IKLGALNCTA ENSBTAP00000026111/1-904 MDLIRGVLLR LLLLASSLGP GAAPLRSALR KQGKVGPPLD IILDALNCSA ENSTTRP00000010971/1-1017 MDLTQGVLLR LLLLASSLGP GAVPLRAAHR KPGKVGPPLD ITLEALNCTA bmy_07094T0/1-746 ---------- ---------- ---------- ---------- ---------- BACU015008/1-626 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000346964/1-1017 FSIQWKMPRH PGSPILGYTV FYSEVGADKS LQEQLHSVPL SRDIPTT--- ENSBTAP00000026111/1-904 FSIQWKMPRH PPSPIMGYTV FYSEVGIDKS LQERSYGVPP GLDTPTSGRL ENSTTRP00000010971/1-1017 FSIRWKMPRH PGSPIMGYTV FYSEVGVDKS LQERSHGVPL GLDTLTT--- bmy_07094T0/1-746 ---------- ---------- ---------- ---------- ---------- BACU015008/1-626 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000346964/1-1017 ------EEVI GDLKPGTEYR VSIAAYSQAG KGRLSSPRHV TTLSQDSCLP ENSBTAP00000026111/1-904 DHQMIFEEVI GDLKPGTEYR VSMAAYSQTG KGRLSSPQHV TTLPQDSCLP ENSTTRP00000010971/1-1017 ------EEVI GDLKPGTEYR VSVAAYSQTG KGRLSSPRHI TTLLQDSCLL bmy_07094T0/1-746 ---------- ---------- ---------- ---------- ------MCLI BACU015008/1-626 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000346964/1-1017 PAAPQQPHVI VVSDSEVALS WKPGASEGSA PIQYYSVEFI RPDFDKKWTS ENSBTAP00000026111/1-904 PTAPQQPHVI VVSDSEVALS WKPGESEGSS PIQYYSVEFT RPDFDKSWTS ENSTTRP00000010971/1-1017 PGAPQQLHVT VVSDSEVALS WKPGESEGSS PIQYYSVEFI RPDFDKSWTL bmy_07094T0/1-746 PENRTFPDVF GSPADHVSLF LVQEEISG-- ---------- ---------- BACU015008/1-626 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000346964/1-1017 IHERIQMDSM VIKGLDPDTN YQFAVRAMNS HGPSPRSWPS DIIRTLCPEE ENSBTAP00000026111/1-904 IREQIQMDSM VIKGLDPDTN YQFAVRAVNP HGSSPRSQPS STIRTARPEE ENSTTRP00000010971/1-1017 IQEQLQMDSM VIKGLDPDTS YQFAVRAVNP HGLSPRSQPS DTIRTARPEE bmy_07094T0/1-746 ---------- ---------- ---------- ---------- -------PEE BACU015008/1-626 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000346964/1-1017 AGSGRYGPRY ITDMGAGEDD EGFEDDLDLD ISFEEVKPLP ATKGGNKKFL ENSBTAP00000026111/1-904 SGSGRYGPHY ATDTEAGEDD DTFEDDLDLD ISFEEVKPLP AIKEGNKKFF ENSTTRP00000010971/1-1017 SGSGRYGPHY LTDTEVSEDD DTYEDDLDLD ISFEEVKPLP AIKEGNKKFW bmy_07094T0/1-746 SGSGSYGPHY ITDTEVSEDD DAYEDDLDLD ISFEEVKPLP AIKEGNKKFW BACU015008/1-626 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000346964/1-1017 VESKKMSISN PKTISRLIPP TSASLPVTTV APQPIPIQRK GKNGVAIMSR ENSBTAP00000026111/1-904 VESKMAPRPN PMTVSRLVPP TPASLPTTAV APQPTPVDRK GKHGVAVMPR ENSTTRP00000010971/1-1017 VESKMVPRSN PMAVSRLVPA TPASLPMTEV APQPTPVERK GNNGAAMMPR bmy_07094T0/1-746 VESKMAPRSN PMTISRLVPP TPASLPMTEV APQPTPVERK GKNGVAMMPR BACU015008/1-626 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000346964/1-1017 LFDMPCDETL CSADSFCVND YTWGGSRCQC TLGKGGESCS EDIVIQYPQF ENSBTAP00000026111/1-904 LFDTSCDETV CSADSFCVSD YTWGGSRCHC NLGKGGESCS EDIVIQYPQF ENSTTRP00000010971/1-1017 LFDVSCDEIL CSADSFCVND YTWGGSRCHC NLGKGGESCS EDIVIQYPQF bmy_07094T0/1-746 LFDVSCDETL CSADSFCVND YTWGGSRCHC NLGKGGESCS EDIVIQYPQF BACU015008/1-626 ---------- ---------- ---------- ---------- --MVIQYPQF 401 450 ENSP00000346964/1-1017 FGHSYVTFEP LKNSYQAFQI TLEFRAEAED GLLLYCGENE HGRGDFMSLA ENSBTAP00000026111/1-904 FGHSYVTFEP LKNSYQAFQI TLEFRAEAED GLLLYCGENE HGRGDFMSLA ENSTTRP00000010971/1-1017 FGHSYVTFEP LKNSYQAFQI TLEFRAEAED GLLLYCGENE HGRGDFMSLA bmy_07094T0/1-746 FGHSYVTFEP LKNSYQAFQI TLEFRAEAED GLLLYCGETE HGRGDFMSLA BACU015008/1-626 FGHSYVTFEP LKNSYQAFQI TLEFRAEAED GLLLYCGENE HGRGDFMSLA 451 500 ENSP00000346964/1-1017 IIRRSLQFRF NCGTGVAIIV SETKIKLGGW HTVMLYRDGL NGLLQLNNGT ENSBTAP00000026111/1-904 VIRRSLQFRF NCGTGVAIIV SETKIKLGGW HTVTLYRDGL NGLLQLNNGT ENSTTRP00000010971/1-1017 VVQRSLQFRF NCGTGLAIIV SETKIKLGGW HTVTLYRDGL NGLLQLNNGT bmy_07094T0/1-746 VIQRSLQFRF NCGTGVAIIV SETKIKLGGW HTVTLYRDGL NGLLQLNNGT BACU015008/1-626 VIQRSLQFRF NCGTGVAIIV SETKIKLGAW HTVTLYRDGL NGLLQLNNGT 501 550 ENSP00000346964/1-1017 PVTGQSQGQY SKITFRTPLY LGGAPSAYWL VRATGTNRGF QGCVQSLAVN ENSBTAP00000026111/1-904 PVTGQSQGQY SKITFRTPLY LGGAPSAYWL VRATGTNRGF QGCVQALTVN ENSTTRP00000010971/1-1017 PVTGQSQGQY SKITFQTPLY LGGSPRAYWL VRATGTNRGF QGCVQSLTVN bmy_07094T0/1-746 PVTGQSQGQY SKITFRTPLY LGGAPRAYWL VRATGTNQGF QGCVQSLTVN BACU015008/1-626 PVTGQSQGQY SKITFRTPLY LGGAPRAYWL VRATGTNQGF QGCVQSLTVN 551 600 ENSP00000346964/1-1017 GRRIDMRPWP LGKALSGADV GECSSGICDE ASCIHGGTCT AIKADSYICL ENSBTAP00000026111/1-904 GKRLDLRPWP LGKALSGADV GECSSGICDE ASCINGGTCM ASKADSYICL ENSTTRP00000010971/1-1017 GKRMDLRPWP LGKALSGADV GECSSGICDE ASCINGGTCT ASKADSYICL bmy_07094T0/1-746 GKRMDLRPWP LGKALSGADV GECSSGICDE ASCINGGTCT ASKADSYICL BACU015008/1-626 GKRMDLRPWP LGKALSGADV GECSSGICDE ASCINGGTCT ASKADSYICL 601 650 ENSP00000346964/1-1017 CPLGFKGRHC EDAFTLTIPQ FRESLRSYAA TPWPLEPQHY LSFMEFEITF ENSBTAP00000026111/1-904 CPLGFRGRHC EDAFTLTIPQ FKESLRSYAA TPWPLEPRHY LSFMEFEITF ENSTTRP00000010971/1-1017 CPLGFRGRHC EDAFTLTIPQ FRESLRSYAA TPWPLEPRHY LSFMAFEITF bmy_07094T0/1-746 CPLGFRGRHC ED-------- ---------- ---------- ---------- BACU015008/1-626 CPLGFRGRHC EDAFTLTVPQ FRESLRSYAA TPWPLEPRHY LSFMEFEITF 651 700 ENSP00000346964/1-1017 RPDSGDGVLL YSYDTGSKDF LSINLAGGHV EFRFDCGSGT GVLRSEDPLT ENSBTAP00000026111/1-904 RPDSEDGVLL YSYDTGSKDF LSINMAGGHV EFRFDCGSGT GVLRSEEPLT ENSTTRP00000010971/1-1017 WPDSGDGVLL YSYDTGSKDF LSINMAGGHV EFRFDCGSGT GVLRSEEPLT bmy_07094T0/1-746 ----DDGVLL YSYDTDSKDF LSINMAGGHV EFRFDCGSGT GVLRSEEPLT BACU015008/1-626 WPDSDDGVLL YSYDTDSKDF LSINMAGGHV EFRFDCGSGT GVLRSEEPLT 701 750 ENSP00000346964/1-1017 LGNWHELRVS RTAKNGILQV DKQKIVEGMA EGGFTQIKCN TDIFIGGVPN ENSBTAP00000026111/1-904 LGHWHELRVS RTAKNGILQV DKQKAVEGMA EGGFTQIKCN SDIFIGGVPN ENSTTRP00000010971/1-1017 LGHWHELHVS RTAKNGILQV DKQKVVQGMA EGGFTQIKCN SDIFIGGVPN bmy_07094T0/1-746 LGHWHELHVS RTAKNGILQV DTQKVVEGMA EGGFTQIKCN SDIFIGGVPN BACU015008/1-626 LGHWHELHVS RTAKNGILQV DKQKVVEGMA EGGFTQIKCN SDIFIGGVPN 751 800 ENSP00000346964/1-1017 YDDVKKNSGV LKPFSGSIQK IILNDRTIHV KHDFTSGVNV ENAAHPCVRA ENSBTAP00000026111/1-904 YDDVKKNSGI LKPFSGSIQK IILNDRTIHV KHDFTWGVNV ENAAHPCVGS ENSTTRP00000010971/1-1017 YDDVKKNSGI LKPFSGSIQK IILNDRTIHV KHDFTWGVNV ENAAHPCVGA bmy_07094T0/1-746 YDDVKKXSGI LKPFSGSIQK IILNDRTIHV KHDFTWGVNV ENAAHPCVGA BACU015008/1-626 YDDVKKNSGI LKPFSGSIQK IILNDRTIHV KHDFTWGVNV ENAAHPCVGA 801 850 ENSP00000346964/1-1017 PCAHGGSCRP RKEGYDCDCP LGFEGLHCQK ECGNYCLNTI IEAIEIPQFI ENSBTAP00000026111/1-904 PCAHGGSCRP RKEGYECDCP LGFEGLHCQK --------AI TEAIEIPQFI ENSTTRP00000010971/1-1017 PCAHGGSCRP RKEGYECDCP LGFEGLHCQK ECGNYCLNTI TEAIEIPQFI bmy_07094T0/1-746 PCAHGGSCRP RKEGYECDCP LGFEGLHCQK --------AI TEAIEIPQFI BACU015008/1-626 PCAHGGSCRP RKEGYECDCP LGFEGLHCQK --------AI TEAIEIPQFI 851 900 ENSP00000346964/1-1017 GRSYLTYDNP DILKRVSGSR SNVFMRFKTT AKDGLLLWRG DSPMRPNSDF ENSBTAP00000026111/1-904 GRSYLTYDNP DILKRVSGSR SNAFMRFKTT AKDGLLLWRG DSPMRPNSDF ENSTTRP00000010971/1-1017 GRSYLTYDHP DILKRVSGSR SNVFMRFKTT AKDGLLMWRG DSPMRPNSDF bmy_07094T0/1-746 GRSYLTYDHP DILKRVSGSR SNAFMRFKTT AKDGLLMWRG DSPMRPNSDF BACU015008/1-626 GRSYLTYDHP DILKRVSGSR SNAFMRFKTT AKDGLLMWRG DSPMRPNSDF 901 950 ENSP00000346964/1-1017 ISLGLRDGAL VFSYNLGSGV ASIMVNGSFN DGRWHRVKAV RDGQSGKITV ENSBTAP00000026111/1-904 ISLGLRDGAL VF-------- ---------- ---------- ---------- ENSTTRP00000010971/1-1017 ISLGLRDGAL VFSYNLGSGV ASITVNGSFS DGRWHRVKAV RDGQSGKITV bmy_07094T0/1-746 ISLGLRDGAL VFSYNLGSGV ASIMVNGSFN DGRWHRVKAV ---------- BACU015008/1-626 ISLGLRDGAL VFSYNLGSGV ASIMVNGSFN DGRWHRVKAV RDGQSGKITV 951 1000 ENSP00000346964/1-1017 DDYGARTGKS PGMMRQLNIN GALYVGGMKE IALHTNRQYM RGLVGCISHF ENSBTAP00000026111/1-904 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010971/1-1017 DDYGARTGKS PGMMRQLNIN GALYVGGMKE IALHTNRQYT RGLVGCISHF bmy_07094T0/1-746 -----RTGKS PGMMRQLNIN GALYVGGMKE IALHTNRQYM RGLVGCISHF BACU015008/1-626 DDYGARTGKS PGVMRQLNIN GALYVGGMKE IALHTNRQYM RGLVGCISHF 1001 1050 ENSP00000346964/1-1017 TLSTDYHISL VEDAVDGKNI NTCGAK ENSBTAP00000026111/1-904 ---------- ---------- ------ ENSTTRP00000010971/1-1017 TLSTDYHISL VEDAVDGKNI NTCGAQ bmy_07094T0/1-746 TLSTDYHISL VEDAVDGKNI NTCGAK BACU015008/1-626 TLSTDYHISL VEDAVDGKNI NTCGAK