KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:28:00 2014 Check: 00 .. Name: bmy_12157T0/1-569 Len: 781 Check: 7601 Weight: 1.00 Name: ENSBTAP00000026117/1-728 Len: 781 Check: 6789 Weight: 1.00 Name: ENSP00000370964/1-730 Len: 781 Check: 6215 Weight: 1.00 Name: BACU016336/1-605 Len: 781 Check: 6649 Weight: 1.00 Name: ENSTTRP00000006290/1-727 Len: 781 Check: 1512 Weight: 1.00 // 1 50 bmy_12157T0/1-569 ---------- ---------- ---------- ---------- -------CLT ENSBTAP00000026117/1-728 MDTSSKENIR LFSKNSMQPV GRLSFQTEYP SPEEKQPCCG QLKVFLGALS ENSP00000370964/1-730 MDTSSKENIQ LFCKTSVQPV GRPSFKTEYP SSEEKQPCCG ELKVFLCALS BACU016336/1-605 MDTSSKENIQ LFSKNSMQPV GRPSFKTEYP SSEEKQPCCG ELKVFLGALS ENSTTRP00000006290/1-727 MDTSSKENIQ LFSKNSMQPV GRPSFKTEYP SSEEKQPCCG ELKVFLGALS 51 100 bmy_12157T0/1-569 YEHFI----- ---------- ---------- ------LFPK GNLLVITFVS ENSBTAP00000026117/1-728 FVYFAKALAE GYLKSTITQI ERRFDIPSSL VGIIDGSFEI GNLLVIAFVS ENSP00000370964/1-730 FVYFAKALAE GYLKSTITQI ERRFDIPSSL VGVIDGSFEI GNLLVITFVS BACU016336/1-605 FVYFAKALAE GYLKSTITQI ERRFDIPSSL VGVIDGSFEI GNLLVITFVS ENSTTRP00000006290/1-727 FVYFAKALAE GYLKSTITQI ERRFDIPSSL VGVIDGSFEI GNLLVITFVS 101 150 bmy_12157T0/1-569 YFGAKLHRPK IIGAGCLIMG VGTLLIAMPQ FFMEQYRYER YSPFSNSTFS ENSBTAP00000026117/1-728 YFGAKLHRPK IIGAGCLIMG VGTLLIAMPQ FFMEHYKYER YSPLSNSTLS ENSP00000370964/1-730 YFGAKLHRPK IIGAGCVIMG VGTLLIAMPQ FFMEQYKYER YSPSSNSTLS BACU016336/1-605 YFGAKLHRPK IIGAGCLIMG VGTLLIAMPQ FFMEQYRYER YSPFSNSTFS ENSTTRP00000006290/1-727 YFGAKLHRPK IIGAGCLIMG VGTLLIAMPH FFMEQYRYER YSPFSNSTFS 151 200 bmy_12157T0/1-569 ISPCFLGSNS PLPISVMEKS QSKINNGQLA DMQNKCLTSI VIEFQPHLLS ENSBTAP00000026117/1-728 ISPCLLDSNN SLPIPVAEKS QSKINN---- ---------- ---------- ENSP00000370964/1-730 ISPCLLESSS QLPVSVMEKS KSKISN---- ---------- ---------- BACU016336/1-605 ISPCFLGSNS PLPISVMEKS QSKINN---- ---------- ---------- ENSTTRP00000006290/1-727 ISPCFLGSNS PLPISVMEKS QSKINN---- ---------- ---------- 201 250 bmy_12157T0/1-569 FQECEIDASS SMWAYVFLGN LLRGIGETPI QPLGIAYLDD FANEDNAAFY ENSBTAP00000026117/1-728 --ECQIDASS SMWVYVFLGN LLRGFGETPI QPLGIAYLDD FASQDNAAFY ENSP00000370964/1-730 --ECEVDTSS SMWIYVFLGN LLRGIGETPI QPLGIAYLDD FASEDNAAFY BACU016336/1-605 --ECEIDASS SMWAYVFLGN LLRGIGETPI QPLGIAYLDD FANEDNAAFY ENSTTRP00000006290/1-727 --ECEIDAGS SMWAYVFLGN LLRGIGETPI QPLGIAYLDD FANEDNAAFY 251 300 bmy_12157T0/1-569 IGCVQTVAII GPIFGFLLGS LCAKLYVDIG FVNLDHITIT PKDPQWVGAW ENSBTAP00000026117/1-728 IGCVQTVAII GPIFGFLLGS LCAKLYVDIG FVNLEHITIT PKDPQWVGAW ENSP00000370964/1-730 IGCVQTVAII GPIFGFLLGS LCAKLYVDIG FVNLDHITIT PKDPQWVGAW BACU016336/1-605 IGCVQTVAII GPIFGFLLGS LCAKLYVDVG FVNLDHITIT PKDPQWVGAW ENSTTRP00000006290/1-727 IGCVQTVAII GPIFGFLLGS LCAKLYVDIG FVNLDHITIT PKDPQWVGAW 301 350 bmy_12157T0/1-569 WLGYLIAGSI SLLAAVPFWY LPKSLPRPRS REDSNSSSEK SKFIMDDXTD ENSBTAP00000026117/1-728 WLGYLIAGSI TLLAAVPFWC LPRTLPRPRS REDSSSSSEK SKFIMDDHTD ENSP00000370964/1-730 WLGYLIAGII SLLAAVPFWY LPKSLPRSQS REDSNSSSEK SKFIIDDHTD BACU016336/1-605 WLGYLIAGSI SLLAAVPFWY LPKSLPRPRH REDSNSSSEK SKFIMDDHTD ENSTTRP00000006290/1-727 WLGYLIAGSI SLLAAVPFWY LPKSLPRPRS REDSNSSSEK SKFITDDHTD 351 400 bmy_12157T0/1-569 YQTPLGEKAK IMEMARDFLP SLKSLFGNPV YFLYLCASTV QF-NSLFGMV ENSBTAP00000026117/1-728 YQTPPGEKAK IMEMARDFLP SLKSLFGNPV YFLYLCASTV QF-NSLFGMV ENSP00000370964/1-730 YQTPQGENAK IMEMARDFLP SLKNLFGNPV YFLYLCTSTV QF-NSLFGMV BACU016336/1-605 YQTPLGEKAK IMEMARDFLP SLKSLFGNPV YFLYLCASTV QF-NSLFGMV ENSTTRP00000006290/1-727 YQTPLGEKAK IMEMARXXXX XXXXXXXXXX XXXXXXXXXX XXHNSLFGMV 401 450 bmy_12157T0/1-569 TYKPKYIEQQ YGQSSSKANF VIGMLLCPSC ---------- ---FPI---- ENSBTAP00000026117/1-728 TYKPKYIEQQ YGQSASKANF VIGLINIPAV ALGIFSGGIV MKKFRISICG ENSP00000370964/1-730 TYKPKYIEQQ YGQSSSRANF VIGLINIPAV ALGIFSGGIV MKKFRISVCG BACU016336/1-605 TYKPKYIEQQ YGQSSSKANF VIGLINIPAV AFGIFSGGIV MKKFRISVCG ENSTTRP00000006290/1-727 TYKPKYIEQQ YGQSSSKANF VIGLINIPAV AFGIFSGGIV MKKFRISVCG 451 500 bmy_12157T0/1-569 -------GNI SCVLLILS-- ---------- ----NFREIV PI-FRLKVIY ENSBTAP00000026117/1-728 AAKLYLGSSV LGYLLFLSLF ALGCENSDVA GLTISYQGTK PVSYHERALF ENSP00000370964/1-730 AAKLYLGSSV FGYLLFLSLF ALGCENSDVA GLTVSYQGTK PVSYHERALF BACU016336/1-605 AAKLYLGSSV LGYLLFLSLF ALGCENSDVA GLTVSYQGTK PVSYHERALF ENSTTRP00000006290/1-727 AAKLYLGSSV LGYLLFLSLF ALGCENSDVA GLTVSYQGTK PVSYHERALF 501 550 bmy_12157T0/1-569 ---------- ---------- -GI------- -----SKKPN LSLIMNEL-S ENSBTAP00000026117/1-728 SDCNSRCKCS ETKWEPICGE NGITYASACL AGCQTTTGSG KTTVFNNCTC ENSP00000370964/1-730 SDCNSRCKCS ETKWEPMCGE NGITYVSACL AGCQTSNRSG KNIIFYNCTC BACU016336/1-605 SDCNSRCKCS ETKWEPMCGA NGITYASACL AGCQTSTGSG KTTIFNNCTC ENSTTRP00000006290/1-727 SDCNSRCKCS ETKWEPMCGA NGITYASACL AGCQTSTGSG KTTIFNNCTC 551 600 bmy_12157T0/1-569 FQIATQDAN- -------VQR QNGNPCVVQM ELHMHRLVLL VVKP------ ENSBTAP00000026117/1-728 VGLAASKSGN STGMVGRCQK DNGCA----- KMFLYFLVIA VITSYTLSVG ENSP00000370964/1-730 VGIAASKSGN SSGIVGRCQK DNGCP----- QMFLYFLVIS VITSYTLSLG BACU016336/1-605 VGIAASKSGN SSGMVGRCQK DNGCP----- KMFLYFLVIS VITSYTLSLG ENSTTRP00000006290/1-727 VGIATSKSRN SSRMVGRCQK DNGCP----- KMFLYFLVIS VITSYTLSLG 601 650 bmy_12157T0/1-569 -QPGVERLL- CIKPQLKSFA LGIYTLAVRV LEDGKHLNLE EHLHVIKSNV ENSBTAP00000026117/1-728 GIPGYILLLR CIKPQLKSFA LGIYTLAVRV LAG------- ---------- ENSP00000370964/1-730 GIPGYILLLR CIKPQLKSFA LGIYTLAIRV LAG------- ---------- BACU016336/1-605 GIPGYILLLR CIKPQLKSFA LGIYTLAVRV L--------- ---------- ENSTTRP00000006290/1-727 GIPGYILLL- CIKPQLKSFA LGIYTLAVRV LAG------- ---------- 651 700 bmy_12157T0/1-569 NWIVAIIEMD ILSSSRHMYL GLTMILGTMS IFLSIAVLFT LKKKYVSKHR ENSBTAP00000026117/1-728 --IPSPIYFG VLIDTSCLKW GFKRCGSKGS CRLYDSNAFR YRIKQFPKSH ENSP00000370964/1-730 --IPAPVYFG VLIDTSCLKW GFKRCGSRGS CRLYDSNVFR YQIKSIPASH BACU016336/1-605 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006290/1-727 --IPAPVYFG VLIDTSCLKW GFKRCGSRGS CRLYDSNAFR YRIKLIPTSH 701 750 bmy_12157T0/1-569 RFRTKRERTM VSTR------ ------IRKE NCTTSDHLLQ PSYWP----- ENSBTAP00000026117/1-728 CYHMPGLQET TGTN--NPHI VSSFTYISGT NHDAWHNVHF PKYCSAFHFK ENSP00000370964/1-730 CYSIPDLHNA TDTNKFSCHF TACKTYISGT NCDTGHSVNS PKHCSTFHFK BACU016336/1-605 ---------- ---------- ---------D TC-------- --IWD----- ENSTTRP00000006290/1-727 GYHIPGLHNA IGTNS-SCSF IACKXXXXXX XXXXXXXXXX XXXXXXXXXX 751 800 bmy_12157T0/1-569 ---------- ---------- -----GKETQ L ENSBTAP00000026117/1-728 KKLCFKTPKL QNQERKNNGV NKNQEGELYY K ENSP00000370964/1-730 EKLCFKTQKF YNQERKNNGV YKIPKGKLHY K BACU016336/1-605 ---------- ---------- ---------- - ENSTTRP00000006290/1-727 XXXXXXXXXX XXXXXXXXGV Y-NQEGKLYD -