KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 17:28:00 2014 Check: 00 ..
Name: bmy_12157T0/1-569 Len: 781 Check: 7601 Weight: 1.00
Name: ENSBTAP00000026117/1-728 Len: 781 Check: 6789 Weight: 1.00
Name: ENSP00000370964/1-730 Len: 781 Check: 6215 Weight: 1.00
Name: BACU016336/1-605 Len: 781 Check: 6649 Weight: 1.00
Name: ENSTTRP00000006290/1-727 Len: 781 Check: 1512 Weight: 1.00
//
1 50
bmy_12157T0/1-569 ---------- ---------- ---------- ---------- -------CLT
ENSBTAP00000026117/1-728 MDTSSKENIR LFSKNSMQPV GRLSFQTEYP SPEEKQPCCG QLKVFLGALS
ENSP00000370964/1-730 MDTSSKENIQ LFCKTSVQPV GRPSFKTEYP SSEEKQPCCG ELKVFLCALS
BACU016336/1-605 MDTSSKENIQ LFSKNSMQPV GRPSFKTEYP SSEEKQPCCG ELKVFLGALS
ENSTTRP00000006290/1-727 MDTSSKENIQ LFSKNSMQPV GRPSFKTEYP SSEEKQPCCG ELKVFLGALS
51 100
bmy_12157T0/1-569 YEHFI----- ---------- ---------- ------LFPK GNLLVITFVS
ENSBTAP00000026117/1-728 FVYFAKALAE GYLKSTITQI ERRFDIPSSL VGIIDGSFEI GNLLVIAFVS
ENSP00000370964/1-730 FVYFAKALAE GYLKSTITQI ERRFDIPSSL VGVIDGSFEI GNLLVITFVS
BACU016336/1-605 FVYFAKALAE GYLKSTITQI ERRFDIPSSL VGVIDGSFEI GNLLVITFVS
ENSTTRP00000006290/1-727 FVYFAKALAE GYLKSTITQI ERRFDIPSSL VGVIDGSFEI GNLLVITFVS
101 150
bmy_12157T0/1-569 YFGAKLHRPK IIGAGCLIMG VGTLLIAMPQ FFMEQYRYER YSPFSNSTFS
ENSBTAP00000026117/1-728 YFGAKLHRPK IIGAGCLIMG VGTLLIAMPQ FFMEHYKYER YSPLSNSTLS
ENSP00000370964/1-730 YFGAKLHRPK IIGAGCVIMG VGTLLIAMPQ FFMEQYKYER YSPSSNSTLS
BACU016336/1-605 YFGAKLHRPK IIGAGCLIMG VGTLLIAMPQ FFMEQYRYER YSPFSNSTFS
ENSTTRP00000006290/1-727 YFGAKLHRPK IIGAGCLIMG VGTLLIAMPH FFMEQYRYER YSPFSNSTFS
151 200
bmy_12157T0/1-569 ISPCFLGSNS PLPISVMEKS QSKINNGQLA DMQNKCLTSI VIEFQPHLLS
ENSBTAP00000026117/1-728 ISPCLLDSNN SLPIPVAEKS QSKINN---- ---------- ----------
ENSP00000370964/1-730 ISPCLLESSS QLPVSVMEKS KSKISN---- ---------- ----------
BACU016336/1-605 ISPCFLGSNS PLPISVMEKS QSKINN---- ---------- ----------
ENSTTRP00000006290/1-727 ISPCFLGSNS PLPISVMEKS QSKINN---- ---------- ----------
201 250
bmy_12157T0/1-569 FQECEIDASS SMWAYVFLGN LLRGIGETPI QPLGIAYLDD FANEDNAAFY
ENSBTAP00000026117/1-728 --ECQIDASS SMWVYVFLGN LLRGFGETPI QPLGIAYLDD FASQDNAAFY
ENSP00000370964/1-730 --ECEVDTSS SMWIYVFLGN LLRGIGETPI QPLGIAYLDD FASEDNAAFY
BACU016336/1-605 --ECEIDASS SMWAYVFLGN LLRGIGETPI QPLGIAYLDD FANEDNAAFY
ENSTTRP00000006290/1-727 --ECEIDAGS SMWAYVFLGN LLRGIGETPI QPLGIAYLDD FANEDNAAFY
251 300
bmy_12157T0/1-569 IGCVQTVAII GPIFGFLLGS LCAKLYVDIG FVNLDHITIT PKDPQWVGAW
ENSBTAP00000026117/1-728 IGCVQTVAII GPIFGFLLGS LCAKLYVDIG FVNLEHITIT PKDPQWVGAW
ENSP00000370964/1-730 IGCVQTVAII GPIFGFLLGS LCAKLYVDIG FVNLDHITIT PKDPQWVGAW
BACU016336/1-605 IGCVQTVAII GPIFGFLLGS LCAKLYVDVG FVNLDHITIT PKDPQWVGAW
ENSTTRP00000006290/1-727 IGCVQTVAII GPIFGFLLGS LCAKLYVDIG FVNLDHITIT PKDPQWVGAW
301 350
bmy_12157T0/1-569 WLGYLIAGSI SLLAAVPFWY LPKSLPRPRS REDSNSSSEK SKFIMDDXTD
ENSBTAP00000026117/1-728 WLGYLIAGSI TLLAAVPFWC LPRTLPRPRS REDSSSSSEK SKFIMDDHTD
ENSP00000370964/1-730 WLGYLIAGII SLLAAVPFWY LPKSLPRSQS REDSNSSSEK SKFIIDDHTD
BACU016336/1-605 WLGYLIAGSI SLLAAVPFWY LPKSLPRPRH REDSNSSSEK SKFIMDDHTD
ENSTTRP00000006290/1-727 WLGYLIAGSI SLLAAVPFWY LPKSLPRPRS REDSNSSSEK SKFITDDHTD
351 400
bmy_12157T0/1-569 YQTPLGEKAK IMEMARDFLP SLKSLFGNPV YFLYLCASTV QF-NSLFGMV
ENSBTAP00000026117/1-728 YQTPPGEKAK IMEMARDFLP SLKSLFGNPV YFLYLCASTV QF-NSLFGMV
ENSP00000370964/1-730 YQTPQGENAK IMEMARDFLP SLKNLFGNPV YFLYLCTSTV QF-NSLFGMV
BACU016336/1-605 YQTPLGEKAK IMEMARDFLP SLKSLFGNPV YFLYLCASTV QF-NSLFGMV
ENSTTRP00000006290/1-727 YQTPLGEKAK IMEMARXXXX XXXXXXXXXX XXXXXXXXXX XXHNSLFGMV
401 450
bmy_12157T0/1-569 TYKPKYIEQQ YGQSSSKANF VIGMLLCPSC ---------- ---FPI----
ENSBTAP00000026117/1-728 TYKPKYIEQQ YGQSASKANF VIGLINIPAV ALGIFSGGIV MKKFRISICG
ENSP00000370964/1-730 TYKPKYIEQQ YGQSSSRANF VIGLINIPAV ALGIFSGGIV MKKFRISVCG
BACU016336/1-605 TYKPKYIEQQ YGQSSSKANF VIGLINIPAV AFGIFSGGIV MKKFRISVCG
ENSTTRP00000006290/1-727 TYKPKYIEQQ YGQSSSKANF VIGLINIPAV AFGIFSGGIV MKKFRISVCG
451 500
bmy_12157T0/1-569 -------GNI SCVLLILS-- ---------- ----NFREIV PI-FRLKVIY
ENSBTAP00000026117/1-728 AAKLYLGSSV LGYLLFLSLF ALGCENSDVA GLTISYQGTK PVSYHERALF
ENSP00000370964/1-730 AAKLYLGSSV FGYLLFLSLF ALGCENSDVA GLTVSYQGTK PVSYHERALF
BACU016336/1-605 AAKLYLGSSV LGYLLFLSLF ALGCENSDVA GLTVSYQGTK PVSYHERALF
ENSTTRP00000006290/1-727 AAKLYLGSSV LGYLLFLSLF ALGCENSDVA GLTVSYQGTK PVSYHERALF
501 550
bmy_12157T0/1-569 ---------- ---------- -GI------- -----SKKPN LSLIMNEL-S
ENSBTAP00000026117/1-728 SDCNSRCKCS ETKWEPICGE NGITYASACL AGCQTTTGSG KTTVFNNCTC
ENSP00000370964/1-730 SDCNSRCKCS ETKWEPMCGE NGITYVSACL AGCQTSNRSG KNIIFYNCTC
BACU016336/1-605 SDCNSRCKCS ETKWEPMCGA NGITYASACL AGCQTSTGSG KTTIFNNCTC
ENSTTRP00000006290/1-727 SDCNSRCKCS ETKWEPMCGA NGITYASACL AGCQTSTGSG KTTIFNNCTC
551 600
bmy_12157T0/1-569 FQIATQDAN- -------VQR QNGNPCVVQM ELHMHRLVLL VVKP------
ENSBTAP00000026117/1-728 VGLAASKSGN STGMVGRCQK DNGCA----- KMFLYFLVIA VITSYTLSVG
ENSP00000370964/1-730 VGIAASKSGN SSGIVGRCQK DNGCP----- QMFLYFLVIS VITSYTLSLG
BACU016336/1-605 VGIAASKSGN SSGMVGRCQK DNGCP----- KMFLYFLVIS VITSYTLSLG
ENSTTRP00000006290/1-727 VGIATSKSRN SSRMVGRCQK DNGCP----- KMFLYFLVIS VITSYTLSLG
601 650
bmy_12157T0/1-569 -QPGVERLL- CIKPQLKSFA LGIYTLAVRV LEDGKHLNLE EHLHVIKSNV
ENSBTAP00000026117/1-728 GIPGYILLLR CIKPQLKSFA LGIYTLAVRV LAG------- ----------
ENSP00000370964/1-730 GIPGYILLLR CIKPQLKSFA LGIYTLAIRV LAG------- ----------
BACU016336/1-605 GIPGYILLLR CIKPQLKSFA LGIYTLAVRV L--------- ----------
ENSTTRP00000006290/1-727 GIPGYILLL- CIKPQLKSFA LGIYTLAVRV LAG------- ----------
651 700
bmy_12157T0/1-569 NWIVAIIEMD ILSSSRHMYL GLTMILGTMS IFLSIAVLFT LKKKYVSKHR
ENSBTAP00000026117/1-728 --IPSPIYFG VLIDTSCLKW GFKRCGSKGS CRLYDSNAFR YRIKQFPKSH
ENSP00000370964/1-730 --IPAPVYFG VLIDTSCLKW GFKRCGSRGS CRLYDSNVFR YQIKSIPASH
BACU016336/1-605 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000006290/1-727 --IPAPVYFG VLIDTSCLKW GFKRCGSRGS CRLYDSNAFR YRIKLIPTSH
701 750
bmy_12157T0/1-569 RFRTKRERTM VSTR------ ------IRKE NCTTSDHLLQ PSYWP-----
ENSBTAP00000026117/1-728 CYHMPGLQET TGTN--NPHI VSSFTYISGT NHDAWHNVHF PKYCSAFHFK
ENSP00000370964/1-730 CYSIPDLHNA TDTNKFSCHF TACKTYISGT NCDTGHSVNS PKHCSTFHFK
BACU016336/1-605 ---------- ---------- ---------D TC-------- --IWD-----
ENSTTRP00000006290/1-727 GYHIPGLHNA IGTNS-SCSF IACKXXXXXX XXXXXXXXXX XXXXXXXXXX
751 800
bmy_12157T0/1-569 ---------- ---------- -----GKETQ L
ENSBTAP00000026117/1-728 KKLCFKTPKL QNQERKNNGV NKNQEGELYY K
ENSP00000370964/1-730 EKLCFKTQKF YNQERKNNGV YKIPKGKLHY K
BACU016336/1-605 ---------- ---------- ---------- -
ENSTTRP00000006290/1-727 XXXXXXXXXX XXXXXXXXGV Y-NQEGKLYD -