KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:28:02 2014 Check: 00 .. Name: ENSP00000358617/1-762 Len: 769 Check: 1922 Weight: 1.00 Name: ENSBTAP00000026132/1-762 Len: 769 Check: 195 Weight: 1.00 Name: bmy_17292T0/1-526 Len: 769 Check: 7375 Weight: 1.00 Name: ENSTTRP00000008638/1-758 Len: 769 Check: 787 Weight: 1.00 Name: BACU002691/1-762 Len: 769 Check: 6442 Weight: 1.00 // 1 50 ENSP00000358617/1-762 -------MAS NERDAISWYQ KKIGAYDQQI WEKSIEQTQI KGLKNKPKKM ENSBTAP00000026132/1-762 -------MAS NERDAISWYQ KKIGAYDQQI WEKSIEQTQI KGFKNKPKKM bmy_17292T0/1-526 ---------- ---------- ---------- ---------- ---------M ENSTTRP00000008638/1-758 ---------- -ERDAISWYQ KKIGAYDQQI WEKSIEQTQI KGFKNKPKKM BACU002691/1-762 MAGPGPLRRK VPAAGLRGSG HQIGAYDQQI WEKSIEQTQI KGFKNKPKKM 51 100 ENSP00000358617/1-762 GHIKPDLIDV DLIRGSTFAK AKPEIPWTSL TRKGLVRVVF FPLFSNWWIQ ENSBTAP00000026132/1-762 GHIKADLIDV DLIRGSTFAK AKPEIPWTSL TRKGLVRVVF FPLFSSWWIQ bmy_17292T0/1-526 GHIKADLIDV DLIRGSTFAK AKPEIPWTSL TRKGLVRVVF FPFFSNWWIQ ENSTTRP00000008638/1-758 GHIKADLIDV DLIRGSTFAK AKPEIPWTSL TRKGLVRVVF FPFFSNWWIQ BACU002691/1-762 GHIKADLIDV DLIRGSTFAK AKPEIPWTSL TRKGLVRVVF FPFFSNWWIQ 101 150 ENSP00000358617/1-762 VTSLRIFVWL LLLYFMQVIA IVLYLMMPIV NISEVLGPLC LMLLMGTVHC ENSBTAP00000026132/1-762 VTSLRIFVWL LLLYLMQVIA LVLYFMMPIV NVSEVLGPLC LMLLMGTVHC bmy_17292T0/1-526 VTSLRIFVWL LLLYLMQVIA LVFYFMMPIV NVSEVLGPLC LMLLMGTVHC ENSTTRP00000008638/1-758 VTSLRIFVWL LLLYLMQVIA LVFYFMMPIV NVSEVLGPLC LMLLMGTVHC BACU002691/1-762 VTSLRIFVWL LLLYLMQVIA LVFYFMMPIV NVSEVLGPLC LMLLMGTVHC 151 200 ENSP00000358617/1-762 QIVSTQITRP SGNNGNRRRR KLRKTVNGDG SRENGNNSSD KVRGIETLES ENSBTAP00000026132/1-762 QIVSTQITRP SGNNGNRRRR KLRKTVNGDG SRENGNNSSD KARGVETLES bmy_17292T0/1-526 QIVSTQITRP SGNNGNRRRR KLRKTVNGDG SRENGNNSSD KARGTETLES ENSTTRP00000008638/1-758 QIVSTQITRP SGNNGNRRRR KLRKTVNGDG SRENGNNSSD KARGTETLES BACU002691/1-762 QIVSTQITRP SGNNGNRRRR KLRKTVNGDG SRENGNNSSD KARGTETLES 201 250 ENSP00000358617/1-762 VPIIGGFWET IFGNRIKRVK LISNKGTETD NDPSCVHPII KRRQCRPEIR ENSBTAP00000026132/1-762 APLNGSFWRT LFGNRMKRVK LICNRGTETD YDSGCLHPII KKRQCRPEIR bmy_17292T0/1-526 APFNGGFWGT LFGNRMKRVK LICSKGTETD NDSGCLHPII KKRQCRPEIR ENSTTRP00000008638/1-758 APFNGGFWGT LFGSRMKRVK LICSKGTETD NDSGCLPPII KKRQCRPEIR BACU002691/1-762 APFNGGFWGT LFGNRMKRVK LICSKGTETD NDSGCLHPII KKRQCRPEIR 251 300 ENSP00000358617/1-762 MWQTREKAKF SDGEKCRREA FRRLGNGVSD DLSSEEDGEA RTQMILLRRS ENSBTAP00000026132/1-762 MWQTREKAKF SDGEKGRRES FRRLGNGISD DLSSDDDGEA QTQMMILRRS bmy_17292T0/1-526 MWQTREKAKF SDGEKGCREP FGRLGNGISD DLSSEDDGEA QTQMMTLRRS ENSTTRP00000008638/1-758 MWQTREKAKF SDGEKGCREP FGRLGNGISD DLSSEDDGEA RTQMMTLRRS BACU002691/1-762 MWQTREKAKF SDGEKGCREP FGRLGNGISD DLSSEDDGEA RTQMMALRRS 301 350 ENSP00000358617/1-762 VEGASSDNGC EVKNRKSILS RHLNSQVKKT TTRWCHIVRD SDSLAESEFE ENSBTAP00000026132/1-762 VEGASSDNGC EIKSRKSILS RHLNTQVKKT TSKWCSVVRD SDSLAESEFE bmy_17292T0/1-526 VEGASSDNGC EVKNRKSILS RHLNTQVKKT TSKWCPVVRD SDSLAESEFE ENSTTRP00000008638/1-758 VEGASSDNGC EVKNRKSVLS RHLNTQVKKT TSKWCPVVRD SDSLAESEFE BACU002691/1-762 VEGASSDNGC EVKNRKSILS RHLNTQVKKT TSKWCPVVRD SDSLAESEFE 351 400 ENSP00000358617/1-762 SAAFSQGSRS GVSGGSRSLN MSRRDSESTR HDSETEDMLW DDLLHGPECR ENSBTAP00000026132/1-762 SAAFSQGSRS GMSGGSRSLN MLRRDSESTR HDSETEDMLW DDLLHGPECR bmy_17292T0/1-526 SAAFS----- ---------- ---------- ---------- ---------- ENSTTRP00000008638/1-758 SAAFSQGCRS GMSGGSRSLN MLRRDSESTR HDSETEDMLW DDLLHGPECR BACU002691/1-762 SAAFSQGCRS GASGGSRSLN MLRRDSESTR HDSETEDMLW DDLLHGPECR 401 450 ENSP00000358617/1-762 SSVTSDSEGA HVNTLHSGTK RDPKEDVFQQ NHLFWLQNSS PSSDRVSAII ENSBTAP00000026132/1-762 SSVTSDSEGA HVSSLHSGTK RDPKEDVFQQ NHLFWLQNSS PASDRVSAII bmy_17292T0/1-526 ---------- ---------- ---------- ------QNSS PASDRVSAII ENSTTRP00000008638/1-758 SSVTSDSEGT HVNSLHSGTK RDPKEDVFQQ NHLFWLQNSS PASDRVSAII BACU002691/1-762 SSVTSDSEGA HVNSLHSGTK RDPKEDVFQ- ------QNSS PASDRVSAII 451 500 ENSP00000358617/1-762 WEGNECKKMD MSVLEISGII MSRVNAYQQG VGYQMLGNVV TIGLAFFPFL ENSBTAP00000026132/1-762 WEGNECKKMD MSVLEISGII MSRVNAYQQG VGYQMLGNIV TIGLAFFPFL bmy_17292T0/1-526 WEGNECKKMD MSVLEISGII MSRVNAYQQG VGYQMLGNVV TIGLAFFPFL ENSTTRP00000008638/1-758 WEGNECKKMD MSVLEISGII MSRVNAYQQG VGYQMLGNVV TIGLAFFPFL BACU002691/1-762 WEGNECKKMD MSVLEISGII MSRVNAYQQG VGYQMLGNVV TIGLAFFPFL 501 550 ENSP00000358617/1-762 HRLFREKSLD QLKSISAEEI LTLFCGAPPV TPIIVLSIIN FFERLCLTWM ENSBTAP00000026132/1-762 HRLFREKNLD QLKSISAEEI LTLFCGAPPV TPIIILSIIN FFERLCLTWM bmy_17292T0/1-526 HRLFREKSLD QLKSISAEEI LTLFCGAPPV TPIIILSIIN FFERLCLTWM ENSTTRP00000008638/1-758 HRLFREKSLD QLKSISAEEI LTLFCGAPPV APIIFLSIIN FFERLCLTWM BACU002691/1-762 HRLFREKSLD QLKSISAEEI LTLFCGAPPV TPIIILSIIN FFERLCLTWM 551 600 ENSP00000358617/1-762 FFFMMCVAER TYKQRFLFAK LFSHITSARK ARKYEIPHFR LKKVENIKIW ENSBTAP00000026132/1-762 FFFMMCVAER TYKQRFLFAK LFSHITSARK ARKYEIPHFR LKKVENIKIW bmy_17292T0/1-526 FFFMMCVAER TYKQRFLFAK LFSHITSARK ARKYEIPHFR LKKVENIKIW ENSTTRP00000008638/1-758 FFFMMCVAER TYKQRFLFAK LFSHITSARK ARKYEIPHFR LKKVENIKIW BACU002691/1-762 FFFMMCVAER TYKQRFLFAK LFSHITSARK ARKYEIPHFR LKKVENIKIW 601 650 ENSP00000358617/1-762 LSLRSYLKRR GPQRSVDVVV SSVFLLTLSI AFICCAQVLQ GHKTFLNDAY ENSBTAP00000026132/1-762 LSLRSFLKRR GPQRSVDVVV SSVFLLTLSI AFICCAQVLR GHKTFLNDAY bmy_17292T0/1-526 LSLRSFLKRR GPQRSVDVVV SSVFLLTLSI AFICCAQVR- -----VSDRF ENSTTRP00000008638/1-758 LSLRSFLKRR GPQRSVDVVV SSVFLLTLSI AFICCAQVLR GHKTFLNDAY BACU002691/1-762 LSLRSFLKRR GPQRSVDVVV SSVFLLTLSI AFICCAQVLR GHKTFLNDAY 651 700 ENSP00000358617/1-762 NWEFLIWETA LLLFLLRLAS LGSETNKKYS NVSILLTEQI NLYLKMEKKP ENSBTAP00000026132/1-762 NWEFLIWESA LLLFLLRLAS LGSETNKKYS NVSILLTEQI NLYLKMEKKP bmy_17292T0/1-526 HW-------- ---------- ---------- ---------- ----KMEYRA ENSTTRP00000008638/1-758 NWEFLIWESA LLLFLLRLAS LGSETNKKYS NVSILLTEQI NLYLKMEKKP BACU002691/1-762 NWEFLIWESA LLLFLLRLAS LGSETNKKYS NVSILLTEQI NLYLKMEKKP 701 750 ENSP00000358617/1-762 NKKEQLTLVN NVLKLSTKLL KELDTPFRLY GLTMNPLIYN ITRVVILSAV ENSBTAP00000026132/1-762 NKKEQLTLVN NVLKLSTKLL KELDTPFRLY GLTMNPLIYN ITRVVILSAV bmy_17292T0/1-526 H--------- ---------- ---------- ------FLF- ---------- ENSTTRP00000008638/1-758 NKKEQLTLVN NVLKLSTKLL KELDTPFRLY GLTMNPLIYN ITRVVILSAV BACU002691/1-762 NKKEQLTLVN NVLKLSTKLL KELDTPFRLY GLTMNPLIYN ITRVVILSAV 751 800 ENSP00000358617/1-762 SGVISDLLGF NIRLWKIKS ENSBTAP00000026132/1-762 SGVISDLLGF NIRLWKIKS bmy_17292T0/1-526 ---------- --------- ENSTTRP00000008638/1-758 SGVISDLLGF NIRLWKIKS BACU002691/1-762 SGVISDLLGF NIRLWKIKS