KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:28:04 2014 Check: 00 .. Name: bmy_09285T0/1-178 Len: 277 Check: 3572 Weight: 1.00 Name: ENSP00000262866/1-261 Len: 277 Check: 9543 Weight: 1.00 Name: ENSTTRP00000005810/1-262 Len: 277 Check: 827 Weight: 1.00 Name: ENSBTAP00000026137/1-276 Len: 277 Check: 4360 Weight: 1.00 // 1 50 bmy_09285T0/1-178 -------MSS FSHPGL---- ---------- ---------- ---------- ENSP00000262866/1-261 MGSLPSRRKS LPSPSLSSSV QGQGPVTMEA ERSKATAVAL GSFPAGGPAE ENSTTRP00000005810/1-262 MGSQPSRGKA LPSPSLSPCV QGQGPEPMQA ERSKAKAVAL GSFPVGEQAE ENSBTAP00000026137/1-276 MGSQPSRGKA LPSPSFSPCV QGQNPEPMQA ERSRAKAVAL GSFPVGEQAE 51 100 bmy_09285T0/1-178 ---------- ---------- ---------- ---------- --GWAGLGPS ENSP00000262866/1-261 LSLRLGEPLT IVSEDGDWWT VLSEVSGREY NIPSVHVAKV SHGWLYEGLS ENSTTRP00000005810/1-262 LCLRLGEPLT IISEDGDWWT VLSDISGREY ICPSIHVAKI SHGWLYEGLS ENSBTAP00000026137/1-276 LSLRLGEPLT IISEDGDWWT VLSDVSGREY SIPSIHVARI AHGWLYEGLS 101 150 bmy_09285T0/1-178 R--------- ------ALVP PRTLSSSGCY SLSVRLSRPA SWDRIRHYRI ENSP00000262866/1-261 REKAEELLLL PGNPGGAFLI RESQTRRGSY SLSVRLSRPA SWDRIRHYRI ENSTTRP00000005810/1-262 REKAEELLLL PGNPGGAFLI RESQSRRGCY SLSVRLSRPA SWDRIRHYKI ENSBTAP00000026137/1-276 REKAEELLLL PGNHGGAFLI RESQTRRGCY SLSVRLSRPA SWDRIKHYRI 151 200 bmy_09285T0/1-178 QRLDNGWLYI SPRLTFPSLQ ALVDHYSELA DDICCLLKEP CALRRAGPLP ENSP00000262866/1-261 HCLDNGWLYI SPRLTFPSLQ ALVDHYSELA DDICCLLKEP CVLQRAGPLP ENSTTRP00000005810/1-262 QRLDNGWLYI SPRLTFPSLQ ALVDHYSELA DDICCLLKEP CALRRAGPPP ENSBTAP00000026137/1-276 QRLDNGWLYI SPRLTFPSLL ALVDHYSELA DDICCLLKEP CALRRAGPLP 201 250 bmy_09285T0/1-178 GKSIPLPVTV QRTPLNWKEL DSSLLFSEAS ATGEESPLSE GLREALSSYI ENSP00000262866/1-261 GKDIPLPVTV QRTPLNWKEL DSSLLFSEA- ATGEESLLSE GLRESLSFYI ENSTTRP00000005810/1-262 GKSIPLPVTV QRTPLNWKEL DSSLLFSEAS ATGEESPLSE GLREALSSYI ENSBTAP00000026137/1-276 GKAIPPPVTV QATPLNWKEL DSSLLFSEAS AAGEESLLSE GLREALNSYI 251 300 bmy_09285T0/1-178 RLTDD-ISLD DAKAQSRGRK GNQGCST ENSP00000262866/1-261 SLNDEAVSLD DA-------- ------- ENSTTRP00000005810/1-262 SLTYD-ISLD DAK------- ------- ENSBTAP00000026137/1-276 SLTDD-TSLD DAKAESRRRK SNQGCGT