KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:28:05 2014 Check: 00 .. Name: ENSTTRP00000007005/1-473 Len: 509 Check: 888 Weight: 1.00 Name: ENSP00000258443/1-448 Len: 509 Check: 8885 Weight: 1.00 Name: ENSBTAP00000026148/1-449 Len: 509 Check: 762 Weight: 1.00 Name: bmy_17701T0/1-363 Len: 509 Check: 4021 Weight: 1.00 Name: BACU012333/1-273 Len: 509 Check: 5054 Weight: 1.00 // 1 50 ENSTTRP00000007005/1-473 MAHRRGGTRM AWLPILVASL ACWAGAEDAT CGENEFYNQT AGLCHECPPC ENSP00000258443/1-448 MAHVGDCTQT PWLPVLVVSL MCSARAEYSN CGENEYYNQT TGLCQECPPC ENSBTAP00000026148/1-449 MAHRGSCAGM AWLPVLLASL VCRAGAEEAS CGENEFYNQT TGLCRECPQC bmy_17701T0/1-363 ---------- ---------- ---------- ---------- ---------- BACU012333/1-273 ---------- MWL------- ---------- ---------- ---------- 51 100 ENSTTRP00000007005/1-473 GPGEEPYLSC VYGTRDEDYV CVPCPAEKFS KGGYQICRRL KDCEGIFRAS ENSP00000258443/1-448 GPGEEPYLSC GYGTKDEDYG CVPCPAEKFS KGGYQICRRH KDCEGFFRAT ENSBTAP00000026148/1-449 APGEEPYLSC GYGTRDEDYG CVPCPAEKFS KGGYQICRRH KDCEGFFRAT bmy_17701T0/1-363 ---------- ---------- ---------- ---------- ---------- BACU012333/1-273 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000007005/1-473 VLTPGDTEHD AECGPCLPGY YMLENRPRNI YGMVCYSCLL APPNTKEXXX ENSP00000258443/1-448 VLTPGDMEND AECGPCLPGY YMLENRPRNI YGMVCYSCLL APPNTKECVG ENSBTAP00000026148/1-449 VLTPGDTERD AECGPCLPGY YMLENRPRNI YGLVCYSCLL APPNTKECVG bmy_17701T0/1-363 ---------- ---------- ---------- -------MVT AVPTG---VG BACU012333/1-273 ---------- --LGNEEPSY YMLENRPRNI YGMVCYSCLL APPNTKECVG 151 200 ENSTTRP00000007005/1-473 XXXXXXXXXX XXXXXXXXXP VQLVHK---- ---------- ---------- ENSP00000258443/1-448 ATSGASANFP GTSGSSTLSP FQHAHK---- ---------- ---------- ENSBTAP00000026148/1-449 ASSGVSANFP RTPGSSTLSP PQLAHK---- ---------- ---------- bmy_17701T0/1-363 AVSGVSASFL RTPGSSTLSP SQLAHKDEAS VLDPEGPLEG QRQGRPSPES BACU012333/1-273 AVSGVSASFL RTPGSSTLSP SQLAHR---- ---------- ---------- 201 250 ENSTTRP00000007005/1-473 --------EL LGQGHLATAL VIAMSTIFTM AVALVLIIMF YILKARPPAP ENSP00000258443/1-448 --------EL SGQGHLATAL IIAMSTIFIM AIAIVLIIMF YILKTKPSAP ENSBTAP00000026148/1-449 -------AEL SGQGHLATAL VIAMSTIFTM AVAIVLIIMF YILKARPSAP bmy_17701T0/1-363 RPSLPTAAEL SGQGHLATAL VIAMSTIFTM AVALVLIIMF YILKARPPAP BACU012333/1-273 -------AEL SGQGHLATAL VIAMSTIFTM AVALVLIIMF YILKARPPAP 251 300 ENSTTRP00000007005/1-473 GAAPVPRAAP PTTPPDEGRP RP----VPTA CCPSAPVKSP EAPVSQEEEK ENSP00000258443/1-448 A--------- ---------- ---------- CCTSHPGKSV EAQVSKDEEK ENSBTAP00000026148/1-449 A--------- ---------- ---------- CCPSAPVKSP EAPVSEEEEK bmy_17701T0/1-363 GAAPAPLRPP PHRSPPPDAS RPPTPSVPRS LLPQRPREEP GSPRERGGGE BACU012333/1-273 ---------- ---------- ---------- ---------- ---------- 301 350 ENSTTRP00000007005/1-473 KAAPDSVVMF SEQDEFEKLT AAPAKSAKSE NDASSEEEQL LNRSLDSDEE ENSP00000258443/1-448 KEAPDNVVMF SEKDEFEKLT ATPAKPTKSE NDASSENEQL LSRSVDSDEE ENSBTAP00000026148/1-449 KEAKDNVVIF SEKDEFEKLT AAPAKSAKSE NDASSEKEQL LNRSLDSDEE bmy_17701T0/1-363 ERGP-SVVMF SEQDEFEKLT AAPPKSAKSE NDASSEKEQL LNRSLDSD-- BACU012333/1-273 ---------- ---------- ---------- ---------- -DRSLDSD-- 351 400 ENSTTRP00000007005/1-473 LAPDGQGPSE LCLLSLVHLA REKPSTATKA AGIQSRRKKI LDVYANVCGV ENSP00000258443/1-448 PAPDKQGSPE LCLLSLVHLA REKSATSNKS AGIQSRRKKI LDVYANVCGV ENSBTAP00000026148/1-449 PAPDGQGPPE LCLLSLVHLA RDKSATATRA AGIQSRRKKI LDVYASVCGV bmy_17701T0/1-363 ---DGQGPPE LCLLSLVHLA REKAATATKA AGIQSRRKKI LDVYANVCGV BACU012333/1-273 ---DGQGPPE LCLLSLVHLA REKAATATKA AGIQSRRKKI LDVYANVCGI 401 450 ENSTTRP00000007005/1-473 VEGLSPTELP FDCLEKTSRM LSATYNSEKA VVKTWRHLAE SFGLKRDEIG ENSP00000258443/1-448 VEGLSPTELP FDCLEKTSRM LSSTYNSEKA VVKTWRHLAE SFGLKRDEIG ENSBTAP00000026148/1-449 VEGLSPTELP FDCLEKTSRM LSATYNSEKA VVKTWRHLAE SFGLKRDEIG bmy_17701T0/1-363 VEGLSPTELP FDCLEKTSRM LSATYNSEKA VVKTWRHLAE SFGLKRDEIG BACU012333/1-273 VEGLSPTELP FDCLEKTSRM LSATYNSEKA VVKTWRHLAE SFGLKRDEIG 451 500 ENSTTRP00000007005/1-473 GMTDGLQLFD RISTAGYSIP ELLTKLVQIE RLDAVESLCA DILEWVGIPP ENSP00000258443/1-448 GMTDGMQLFD RISTAGYSIP ELLTKLVQIE RLDAVESLCA DILEWAGVVP ENSBTAP00000026148/1-449 GMTDGLQLFD RISTAGYSIP ELLTKLVQIE RLDAVESLCA DILEWVGVPP bmy_17701T0/1-363 GMTDGLQLFD RISTAGYSIP ELLTKLVQIE RLDAVESLCA DILEWAGIPP BACU012333/1-273 GMTDGLQLFD RISTAGYSIP ELLTKLVQIE RLDAVESLCA DILEWAGIPP 501 550 ENSTTRP00000007005/1-473 PAAPPPPAS ENSP00000258443/1-448 PASQPHAAS ENSBTAP00000026148/1-449 PAAPPPPAS bmy_17701T0/1-363 PAAPPPPAS BACU012333/1-273 PAALPPPVS