KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:28:06 2014 Check: 00 .. Name: ENSP00000303192/1-803 Len: 971 Check: 7504 Weight: 1.00 Name: ENSBTAP00000026153/1-723 Len: 971 Check: 582 Weight: 1.00 Name: ENSTTRP00000008490/1-803 Len: 971 Check: 4185 Weight: 1.00 Name: bmy_12548T0/1-678 Len: 971 Check: 7594 Weight: 1.00 Name: BACU005809/1-836 Len: 971 Check: 5750 Weight: 1.00 // 1 50 ENSP00000303192/1-803 MEVKPVGEPT QEVSKFKLST KVESTGHWLV EDHVRIWEVL KTEESSIQDW ENSBTAP00000026153/1-723 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008490/1-803 MEGKPVGEPA HVVSKLKLST KVESAGHWLV EDHARIWEVL KTEESSIQDW bmy_12548T0/1-678 ---------- ---------- ---------- ---------- ---------- BACU005809/1-836 ---------- ---------- ---------- ---------- ---QSSIQDW 51 100 ENSP00000303192/1-803 GEEVEEGAVY HVTLKRVQIQ QAANKGARWL GV-------- ---------- ENSBTAP00000026153/1-723 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008490/1-803 GEEVEEGAVY HVTLKRVQIQ QAANKGARWL GV-------- ---------- bmy_12548T0/1-678 ---------- ---------- ---------- ---------- ---------- BACU005809/1-836 GEEVEEGAVY HVTLKRVQIQ QAANKGARWL GVSCWEALFL SLETPDLIKC 101 150 ENSP00000303192/1-803 ---------- ---------- ---------- ------EGDQ LPPGHTVSQY ENSBTAP00000026153/1-723 ---------- ---------- ---------- ----QVEGDQ LPPGHTVSQY ENSTTRP00000008490/1-803 ---------- ---------- ---------- ------EGDQ LPPGHTVSQY bmy_12548T0/1-678 ---------- ---------- ---------- ---------- ---------- BACU005809/1-836 DSTNRAIAIT KPFSLGRTVF NLKKDKNRGR NEGIKVEGDQ LPPGHTVSQY 151 200 ENSP00000303192/1-803 ETCKIRTIKA GTLEKLVENL LTAFGDNDFT YISIFLSTYR GFASTKEVLE ENSBTAP00000026153/1-723 ETCKIRTIKA GTLEKLVENL LTAFGDNDFT YISIFLSTYR GFASTKEVLE ENSTTRP00000008490/1-803 ETCKIRTIKA GTLEKLVENL LTAFGDNDFT YISIFLSTYR GFASTKEVLE bmy_12548T0/1-678 ---------- ---------- ---------- ---------- ---------- BACU005809/1-836 ETCKIRTIKA GTLEKLVENL LTAFGDNDFT YISIFLSTYR GFASTKEVLE 201 250 ENSP00000303192/1-803 LLLDRYGNLT SPNCEEDGSQ SSSESKMVIR NAIASILRAW LDQCAEDFRE ENSBTAP00000026153/1-723 LLLDRYGNLT SPNCEEDGGQ SSSESKTVIR NAIASILRAW LDQCAEDFRE ENSTTRP00000008490/1-803 LLLDRYGNLT SPNCEEVGGQ SSSESKTVIR NAIASILRAW LDQCAEDFRE bmy_12548T0/1-678 ---------- ---------- ---------- SAIASILRAW LDQCAEDFRE BACU005809/1-836 LLLDRYGNLT SPNCEEVGGQ SSSESKTVIR NAIASILRAW LDQCAEDFRE 251 300 ENSP00000303192/1-803 PPHFPCLQKL LDYLTRMMPG SDPERRAQNL LEQFQKQEVE TDN------- ENSBTAP00000026153/1-723 PPGFPCLQKL LHYLKQMMPG SDPERRAQNL LEQFHKQEVE ADN------- ENSTTRP00000008490/1-803 PPHFPCLQKL LDYLKQMMPG SDPERRAQNL LEQFHKQEVE TDN------- bmy_12548T0/1-678 PPHFPCLQKL LDYLKQMMPG SDPERRAQNL LEQFHKQEVE TDN------- BACU005809/1-836 PPHFPCLQKL LDYLKQMMPG SDPERRAQNL LEQFHKQEVE TDNDFICREC 301 350 ENSP00000303192/1-803 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026153/1-723 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008490/1-803 ---------- ---------- ---------- ---------- ---------- bmy_12548T0/1-678 ---------- ---------- ---------- ---------- ---------- BACU005809/1-836 LNTRGTPPAA GPQLPSGPPL LSSCWSGYTI RAQLSLRELP LASGLIGELV 351 400 ENSP00000303192/1-803 ------GLPN TISFSLEEEE ELEGGESAEF TCFSEDLVAE QLTYMDAQLF ENSBTAP00000026153/1-723 ------GFPN SISFSLEEEE ELEGGGSAEF TCFSEDLVAE QLTYMDAQLF ENSTTRP00000008490/1-803 ------GFPS TISFSLEEEE ELEGGGSAEF TCFSEDLVAE QLTYMDAQLF bmy_12548T0/1-678 ------GFPN TISFSLEEEE ELEGGGSAEF TCFSEDLVAE QLTYMDAQLF BACU005809/1-836 GPVVHYGFPN TISFSLEEEE ELEGSGSAEF TCFSEDLVAE QLTYMDAQLF 401 450 ENSP00000303192/1-803 KKVVPHHCLG CIWSRRDKKE NKHLAPTIRA TISQFNTLTK CVVSTILGGK ENSBTAP00000026153/1-723 KKVVPHHCLG CIWSRRDKKE NKHLAPTIRA TISQFNTLTK CVVSTILGGK ENSTTRP00000008490/1-803 KKVVPHHCLG CIWSRRDKKE NKHLAPTIRA TISQFNTLTK CIVSTILGGK bmy_12548T0/1-678 KKVVPHHCLG CIWSRRDKKE NKHLAPTIRA TISQFNTLTK CVVSTILGGK BACU005809/1-836 KKVVPHHCLG CIWSRRDKKE NKHLAPTIRA TISQFNTLTK CVVSTILGGK 451 500 ENSP00000303192/1-803 ELKTQQRAKI IEKWINIAHE CRLLKNFSSL RAIVSALQSN SIYRLKKTWA ENSBTAP00000026153/1-723 ELKTQQRAKI IEKWINIAHE CRILKNFSSL RAIVSALQSN SIYRLKKTWA ENSTTRP00000008490/1-803 ELKTQQRAKI IEKWINIAHE CRILKNFSSL RAIVSALQSN SIYRLKKTWA bmy_12548T0/1-678 ELKTQQRAKI IEKWINIAHE CRILKNFSSL RAIVSALQSN SIYRLKKTWA BACU005809/1-836 ELKTQQRAKI IEKWINIAHE CRILKNFSSL RAIVSALQSN SIYRLKKTWA 501 550 ENSP00000303192/1-803 AVPRDRMLMF EELSDIFSDH NNHLTSRELL MKEGTSKFAN LDSSVKENQK ENSBTAP00000026153/1-723 AVPKDRMLMF EELSDIFSDH NNHLTSRELL MKEGTSKFAN LDSSVKENQK ENSTTRP00000008490/1-803 AVPKDRMLMF EELSDIFSDH NNHLTSRELL MKEGTSKFAN LDSSVKENQK bmy_12548T0/1-678 AVPKDRMLMF EELSDIFSDH NNHLTSRELL MKEGTSKFAN LDSSVKENQK BACU005809/1-836 AVPKDRMLMF EELSDIFSDH NNHLTSRELL MKEGTSKFAN LDSSVKENQK 551 600 ENSP00000303192/1-803 RTQRRLQLQK DMGVMQGTVP YLGTFLTDLT MLDTALQDYI EGGLINFEKR ENSBTAP00000026153/1-723 RTQRRLQLQK DMGVMQGTVP YLGTFLTDLT MLDTALQDYI EGGLINFEKR ENSTTRP00000008490/1-803 RTQRRLQLQK DMGVMQGTVP YLGTFLTDLT MLDTALQDYI EGGLINFEKR bmy_12548T0/1-678 RTQRRLQLQK DMGVMQGTVP YLGTFLTDLT MLDTALQDYI EGGLINFEKR BACU005809/1-836 RTQRRLQLQK DMGVMQGTVP YLGTFLTDLT MLDTALQDYI E--------- 601 650 ENSP00000303192/1-803 RR-------- ---------- --EFEVIAQI KLLQSACNSY CMTPDQKFIQ ENSBTAP00000026153/1-723 RR-------- ---------- --EFEVIAQI KLLQSACNSY CMSPDPKFIQ ENSTTRP00000008490/1-803 RR-------- ---------- --EFEVIAQI KLLQSACNSY CMTPDPKFIQ bmy_12548T0/1-678 RREKEGLTAK ACKDTSESEL QAEFEVIAQI KLLQSACNSY CMTPDPKFIQ BACU005809/1-836 ---------- ---------- --EFEVIAQI KLLQSACNSY CMTPDPKFIQ 651 700 ENSP00000303192/1-803 WFQRQQLLTE EES------- ---------- ---------- ----YALSCE ENSBTAP00000026153/1-723 WFQRQQLLTE EES------- ---------- ---------- ----YALSCE ENSTTRP00000008490/1-803 WFQRQQLLTE EES------- ---------- ---------- ----YXXXXX bmy_12548T0/1-678 WFQRQQLLTE EERAYLYKEA SKSCGFKSVH FPSSALTSSP LSPSYALSCE BACU005809/1-836 WFQRQQLLTE EER------- ---------- ---------- ---------- 701 750 ENSP00000303192/1-803 IEAAADASTT SPKPRKSMVK RLSLLFLGSD MITSPTPTKE QPKSTASGSS ENSBTAP00000026153/1-723 IEAAADASAT SPKPRKSMVK RLSLLFLGSD IVTSSAPTKE QPKSATSGSS ENSTTRP00000008490/1-803 XXXXXXXXXX XXXXXXXXXX XXXXLFLGSD IITSSTPTKE QPKSTASGSS bmy_12548T0/1-678 IEASADASAT SPKPRKSMVK RLSLLFLGSD IITSSTPTKE QPKSTASGSS BACU005809/1-836 ---------- ---------- ----LFLGSD IITSSTPTKE QPKSTASGSS 751 800 ENSP00000303192/1-803 GESMDSVSVS SCESNHSEAE EGSITPMDTP DEPQKKLSES SSSCSSIHSM ENSBTAP00000026153/1-723 GESMDSVSVS SCESNHSEVE EGSITPMDTP DEPQKKLSES SSSCSSIHSM ENSTTRP00000008490/1-803 GESMDSVSVS SCESNHSEAE EGSITPMDTP DEAQKKLSES SSSCSSIHSM bmy_12548T0/1-678 GESMDSVSVS SCESNHSEAE EGSITPMDTP DEAQKKLSES SSSCSSIHSM BACU005809/1-836 GESMDSVSVS SCESNHSEAE EGSITPMDTP DEAQKKLSES SSSCSSIHSM 801 850 ENSP00000303192/1-803 DTNSSGMSSL INPLSSPPSC NNNPKIHKRS VSVTSITSTV LPPVYNQQNE ENSBTAP00000026153/1-723 DTTSSGMSSL MNPLSSPPSC NNNPKIHKRS VSVTSITSTV LPPVYNQQNE ENSTTRP00000008490/1-803 DTASSGMSSL MNPLSSPPPC NNNPKIHKRS VSVTSITSTV LPPVYNQQNE bmy_12548T0/1-678 DTTSSGMSSL MNPLSSPPPC NNNPKIHKRS VSVTSITSTV LPPVYNQQNE BACU005809/1-836 DTTSSGMSSL MNPLSSPPPC NNNPKIHKRS VSVTSITSTV LPPVYNQQNE 851 900 ENSP00000303192/1-803 DTCIIRISVE DNNGNMYKSI MLTSQDKTPA VIQRAMLKHN LDSDPAEEYE ENSBTAP00000026153/1-723 DTCIIRISIE DNNGNMYKSI MLTSQDKTPA VIQRAMLKHN LDSDPAEEYE ENSTTRP00000008490/1-803 DTCIIRISIE DNNGNMYKSI MLTSQDKTPA VIQRAMLKHN LDSDPAEGYE bmy_12548T0/1-678 DTCIIRISIE DNNGNMYKSI MLTSQDKTPA VIQRAMLKHN LDSDPAEEYE BACU005809/1-836 DTCIIRISIE DNNGNMYKSI MLTSQDKTPA VIQRAMLKHN LDSDPAEEYE 901 950 ENSP00000303192/1-803 LVQVISEDKE LVIPDSANVF YAMNSQVNFD FILRKKNSME EQVKLRSRTS ENSBTAP00000026153/1-723 LVQVISEDKE LVIPDSANVF YAMNSQVNFD FILRKKNSVE EQVKLRSRTS ENSTTRP00000008490/1-803 LVQVISEDKE LVIPDSANVF YAMNSQVNFD FILRKKNSVE EQVKLRSRTS bmy_12548T0/1-678 LVQVISEDKE LVIPDSANVF YAMNSQVNFD FILRKKNSVE EQVKLRSRTS BACU005809/1-836 LVQVISEDKE LVIPDSANVF YAMNSQVNFD FILRKKNSVE EQVKLRSRTS 951 1000 ENSP00000303192/1-803 LTLPRTAKRG CWSNRHSKIT L ENSBTAP00000026153/1-723 LTLPRTAKRG CWSNRHSKIT L ENSTTRP00000008490/1-803 LTLPRTAKRG CWSNRHSKIT L bmy_12548T0/1-678 LTLPRTAKRG CWSNRHSKIT L BACU005809/1-836 LTLPRTAKRG CWSNRHSKIT L