KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:28:10 2014 Check: 00 .. Name: ENSP00000337797/1-910 Len: 1230 Check: 3483 Weight: 1.00 Name: ENSBTAP00000026157/1-913 Len: 1230 Check: 147 Weight: 1.00 Name: BACU003626/1-1220 Len: 1230 Check: 8710 Weight: 1.00 Name: ENSTTRP00000011794/1-913 Len: 1230 Check: 3048 Weight: 1.00 Name: bmy_04990T0/1-852 Len: 1230 Check: 9181 Weight: 1.00 // 1 50 ENSP00000337797/1-910 MAATVEGPEL EAAA---AAG DASEDSDAGS RALPFLGGNR LSLDLYPGGC ENSBTAP00000026157/1-913 MAAMEAGPVP ATLAQEDAAR DASEAAGAGP EAPLLPAGNR LSLHLHPGGC BACU003626/1-1220 MAAVAEGLEP ETAAVEDAAR DATDAVDAGL GAPPLLVGNR LSLDLYPRGC ENSTTRP00000011794/1-913 MAAEAEGLEP ETAAVEDAAG DATDAVDARL GAPPLLVGSR LSLDLYPRGC bmy_04990T0/1-852 MAAVAEGLEP ETAAVEDAAR DATDAVDAGL GAPPLLVGNR LSLDLYPRGC 51 100 ENSP00000337797/1-910 QQLLHLCVQQ PLQLLQVEFL RLSTHEDPQL LEATLAQLPQ SLSCLRSLVL ENSBTAP00000026157/1-913 RRLLRLCAQQ APQLLEVDFL QLSGHEDPQL LEAALARLPW SLPRLRSLVL BACU003626/1-1220 HRLLHLCAQQ VRQLLEVEFL RLSGHEDPQL LQATLARLSW SLPRLRSLVL ENSTTRP00000011794/1-913 HRLLHLCAQQ VRQLLEVEFL QLSGHEDPQL LQATLARLPW SLPRLRSLVL bmy_04990T0/1-852 HRLLHLCAQQ VRQLLEVEFL QLSGHEDPQL LQATLARLPW SLPRLRSLVL 101 150 ENSP00000337797/1-910 KGGQRRDTLG ACLRGALTNL PAGLSGLAHL AHLDLSFNSL ETLPACVLQM ENSBTAP00000026157/1-913 KGGQRREALG ACLRGSLATL PASLSSLARL AHLDLSFNSL ETLPACVPQM BACU003626/1-1220 KGGQHRDALG ACLRGSVATL PASLSGLAHL AHLDLSFNSL ETLPACVPQL ENSTTRP00000011794/1-913 KGGQHRDALG ACLRGSLATL PASLSGLAHL AHLDLSFNSL ETLPACVPQL bmy_04990T0/1-852 KGGQHRDALG ACLRGSLSTL PASLSGLAHL AHLDLSFNSL ETLPACVPQL 151 200 ENSP00000337797/1-910 RGLGALLLSH NCLSELPEAL GALPALTFLT VTHNRLQTLP PALGALSTLQ ENSBTAP00000026157/1-913 CGLDALLLSR NCLSELPAAL GALPALTFLA VTHNRLRTLP PALGALSSLQ BACU003626/1-1220 CGLGALLLSH NCLSELPEAL GALPALTFLA ATHNRLQTLP TALGSLSTLQ ENSTTRP00000011794/1-913 CGLDALLLSH NCLSELPEAL GALAALTFLA ATHNRLQTLP AALGSLSSLQ bmy_04990T0/1-852 CGLGALLLSH NCLSELPEAL GALPALTFLA ATHNRLQTLP TALGSLSTLQ 201 250 ENSP00000337797/1-910 RLDLSQNLLD TLPPEIGGLG SLLELNLASN RLQSLPASLA GLRSLRLLVL ENSBTAP00000026157/1-913 RLDLSGNLLE ALPPEIGGLG SLAELNLASN RLQSLPSSLA GLRALRLFIL BACU003626/1-1220 RLDLSENLLD ALPPEIGGLS SLAELNLASN RLQGLPASLA GLRSLRLLVL ENSTTRP00000011794/1-913 RLDLSENLLD ALPPEIGGLS SLAELNLASN RLQGLPASLA GLRSLRLLVL bmy_04990T0/1-852 RLDLSENLLD ALPPEIGGLS SLAELNLASN RLQGLPASLA GLRSLRLLLL 251 300 ENSP00000337797/1-910 HSNLLASVPA DLARLPLLTR LDLRDNQLRD LPPELLDAPF VRLQGNPLGE ENSBTAP00000026157/1-913 HSNLLASVPA SLARLPLLTR LDLRDNQLRD VPPELLDAPF VRLQGNPLGR BACU003626/1-1220 HSNLLASVPA GLARLPLLTR LDLRDNQLQD VPPELLDAPF VRLQGNPLGG ENSTTRP00000011794/1-913 HSNLLASVPA GLARLPLLAR LDLRDNQLRD VPPELLNAPF VRLQGNPLGG bmy_04990T0/1-852 HSNLLASLPA GLAHLPLLTR LDLRDNRLRD VPPELLDAPF VRLRGNPLGG 301 350 ENSP00000337797/1-910 ASPDAPSSPV AALIPEMPRL FLTSDLDSFP VTPQGCSVTL ACGVRLQFPA ENSBTAP00000026157/1-913 PPPDPPSPPG PPVVPEMPRL LLTSDRDSFA VTPQGCSVTL ACGVRLQFPA BACU003626/1-1220 PSPAPHSPPG TPVVPEMPRL LLTSDLDSFA VTPLGCSVTL ACGVRLQFPV ENSTTRP00000011794/1-913 PSPGPHSPPG TPVVPEMPRL LLTSDLDSFA VTPLGCSVTL ACGVRLQFPV bmy_04990T0/1-852 PSPAPHSPPG TPVAPEMPRL LLTSDLDSFT VTPLGCSVTL ACGVRLQFPV 351 400 ENSP00000337797/1-910 GATATPITIR YRLLLPEPGL VPLGPHDALL SHVLELQPHG VAFQQ----- ENSBTAP00000026157/1-913 GATAAPMTIR YRLWLPEPRL VPLGPHDALL SGVLELQPHG VAFQQ----- BACU003626/1-1220 GATATPVTIR YRLWLPEPRL VPLGPHDSLL SGVLELQPHG VAFQKARPGR ENSTTRP00000011794/1-913 GATATPVTIR YRLWLPEPRL VPLGPHDSLL SGVLELQPHG VAFQK----- bmy_04990T0/1-852 GATATPVTIR YRLWLPEPRL VPLGPHDSLL SGVLELQPHG ---------- 401 450 ENSP00000337797/1-910 DVGLWLLFTP PQARRCREVV VRTRNDNSWG DLETYLEEEA PQRLWAHCQV ENSBTAP00000026157/1-913 EVGLWLLFVP PRARRCREVV VRTLSDNSWS DLETHLEEET PKRLWAHCQV BACU003626/1-1220 EVGLWLLFVP PRARRCREVV VRTLSDNSWS DLETHLEEEA PKRLWARCQV ENSTTRP00000011794/1-913 DVGLWLLFVP PRARRCREVV VRTLSDNSWS DLETHLEEEA PKRLWARCQV bmy_04990T0/1-852 EVGLWLLFVP PRARRCREVV VRTLSDNSWS DLETHVEEEA PKRLWARCQV 451 500 ENSP00000337797/1-910 PHFSWFLVVS RPVSNACLVP PEGTLLCSSG HPGVKVIFPP GATEEPRRVS ENSBTAP00000026157/1-913 PHFSWFLVVS RPVSDACLVP PEGTLLCSSG HAGVRVTFPA GATEEPRHVR BACU003626/1-1220 PHFSWFLVVS RPVSDACLVP PEGTLLCSSG HPGVKVTFPP GATEQPRHVR ENSTTRP00000011794/1-913 PHFSWFLVVS RPVSDACLVP PEGTLLCSSG HPGVKVTFPP GATEEPRHAR bmy_04990T0/1-852 PHFSWFLVVS RPVSDACLVP PEGTLLCSSG HPGVKVTFPP GATEEPRHVR 501 550 ENSP00000337797/1-910 MQVVRMAGRE LQALLGEPEA AVSPLLCLSQ SGPPSFLQPV TVQLPLPSGI ENSBTAP00000026157/1-913 MQVVRVGSRE LPALLGEPEA ASSPLLCLSQ SGPSSFLRPV TIQLPLPPGV BACU003626/1-1220 MQVVRVGSRE LPALLGEPEA AASPLLYLSQ SGPPSFLRPV TVQLPLPPGV ENSTTRP00000011794/1-913 MQVVRVGSRE LPALLGEPEA AASPLLYLSQ SGPPSFLRPV TVQLPLPPGV bmy_04990T0/1-852 MQVVRVGSRE LPALLGEPEA AASPLLYLSQ SGPPSFLRPV TVQLPLPPGV 551 600 ENSP00000337797/1-910 TGLSLDRSRL HLLYWAPPAA TWDDITAQVV LELTHLYARF QVTHFSWYWL ENSBTAP00000026157/1-913 TGLSLDRARL HLLHRAAPAA AWDDITAQVA LELTHLYARF QVTRFSWYWL BACU003626/1-1220 TGLSLDRSHL HLLYRAPPAA TWDDITAQVA LELTHLYARF QVTRFSWYWL ENSTTRP00000011794/1-913 TGLSLDRSHL HLLYRAPPAA TWDDITAQVA LELTHLYARF QVTHFSWYWL bmy_04990T0/1-852 TGLSLDRSHL HLLYRAPPAA TWDDITAQVA LELTHLYARF Q--------- 601 650 ENSP00000337797/1-910 WYTTKNCVGG LARKAWERLR LHRVNLIALQ RRRDPEQVLL QCLPRNKVDA ENSBTAP00000026157/1-913 WYTTKACVGS LARKAWERLR LYRVNLIALQ RRRDPEQVLL QCLPRNKVDA BACU003626/1-1220 WYTTKTCVGG LARKAWERLR LHRVNLIALQ RRRDPEQ--- -------VDS ENSTTRP00000011794/1-913 WYTTKTCVGG LARKAWERLR LHRVSLIALQ RRRDPEQVLL QCLPRNKVDS bmy_04990T0/1-852 ---------- ---------- ---------- ---------- -------VDS 651 700 ENSP00000337797/1-910 TLRRLLERYR GPEPSDTVEM FEGEEFFAAF ERGIDVDADR PDCVEGRICF ENSBTAP00000026157/1-913 TLRRLLERYR GLEPSDTVEM FEGEKFFAAF ERGIDIDADR PDCVEGRLCF BACU003626/1-1220 TLRRLLERYR GPEPSDTVEM FEGEKFFAAF ERGIDVDADR PDCVEGRVCF ENSTTRP00000011794/1-913 TLRRLLERYR GPEPSDTVEM FEGEKFFAAF ERGINVDADR PDCVEGRVCF bmy_04990T0/1-852 TLRRLLERYR GPEPSDTVEM FEGEKFFAAF ERGISVDADR PDCVEGRVCF 701 750 ENSP00000337797/1-910 VFYSHLKNVK EVYVTTTLDR EAQAVRGQVS FYRGAVPVRV PEEAEAARQR ENSBTAP00000026157/1-913 VFYSHLKNLK EVYVTTALDR RARAVRGQVS FYRGEVPEVV PEEAEAARQK BACU003626/1-1220 VFYSHLKNLK EVYVTTTLDR RAQAVRGQVS FYRGEVPEEV PEEAGAARQK ENSTTRP00000011794/1-913 VFYSHLKNLK EVFVTTTLDR RAQAVRGQVS FYRGEVPKEV PEEAEAARQK bmy_04990T0/1-852 VFYSHLKNLK EVYVTTTLDR RAQAVRGQVS FYRGEVPEEV PEEAEAARQK 751 800 ENSP00000337797/1-910 KGADALWMAT LPIKLPRLRG SEGPRRGAGL SLAPLNLGDA ETGFLTQSNL ENSBTAP00000026157/1-913 RGPAALWMAT LPIKLPRLQG CEGPTREPGL SLAPLNLGDA ETGFLTQSNL BACU003626/1-1220 RGADAPWMAP LPIKLPRLRG SEGPGQGAGL SLAPLNLGDA ETGFLTQSNL ENSTTRP00000011794/1-913 RGADAPWMAT LPLKLPRLRG SKGPGQGAGL SLAPLNLGDA ETGFLTQSNL bmy_04990T0/1-852 RGADAPWMAT LPIKLPRLRG SEGPGQGAGL SLAPLNLGDA ETGFLTQSNL 801 850 ENSP00000337797/1-910 LSVAGRLGLD WPAVALHLGV SYREVQRIRH EFRDDLDEQI RHMLFSWAER ENSBTAP00000026157/1-913 LNVAGRLGPD WPAVALHLGL PYRELQRIRH EFRDDLDGQI RHMLFSWAER BACU003626/1-1220 LNVAGRLGPD WPAVALHLGL PYRELQRIRH EFRDDLDGQI RHMLFSWAER ENSTTRP00000011794/1-913 LNVAGRLGPD WPAVALHLGL PYRELQRIRH EFRDDLDGQI RHMLFSWAER bmy_04990T0/1-852 LNVAGRLGPD WPAVALHLGL PYRELQRIRH EFRDDLDGQI RHMLFSWAER 851 900 ENSP00000337797/1-910 QAGQPGAVGL LVQALEQSDR QDVAEE---- ---------- ---------- ENSBTAP00000026157/1-913 QAGQPGAVGR LVQALEQSDR RDVAEE---- ---------- ---------- BACU003626/1-1220 QAGQPGAVGL LVQALEQSDR RDVAEEDTSS QRTSPSAGPT GVVPGPRPMD ENSTTRP00000011794/1-913 QAGQPGAVGL LVEALEQSDR RDVAEE---- ---------- ---------- bmy_04990T0/1-852 QAGQPGAVGL LVQALEQSDR RDVAEE---- ---------- ---------- 901 950 ENSP00000337797/1-910 ---------- ---------- ---------- VRAVLEL--- ---------G ENSBTAP00000026157/1-913 ---------- ---------- ---------- VRAVLEL--- ---------G BACU003626/1-1220 GREAGHAGKT LGDLGLPAKL INGGIAGLIG VTCVFPIDLA KTRLQNQQNG ENSTTRP00000011794/1-913 ---------- ---------- ---------- VRAVLEL--- ---------G bmy_04990T0/1-852 ---------- ---------- ---------- VXAVLEL--- ---------G 951 1000 ENSP00000337797/1-910 RRKYQD---- ---------- ---------- ---------- ---------- ENSBTAP00000026157/1-913 RRKYQE---- ---------- ---------- ---------- ---------- BACU003626/1-1220 QRLYTSMSDC LIKTIRSEGY FGMYRGAAVN LTLVTPEKAI KLAANDFFRY ENSTTRP00000011794/1-913 RRKYQE---- ---------- ---------- ---------- ---------- bmy_04990T0/1-852 RRKYQE---- ---------- ---------- ---------- ---------- 1001 1050 ENSP00000337797/1-910 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026157/1-913 ---------- ---------- ---------- ---------- ---------- BACU003626/1-1220 QLSKDGKKLT LFKEMLAGCG AGTCQVIVTT PMEMLKIQLQ DAGRIAAQRK ENSTTRP00000011794/1-913 ---------- ---------- ---------- ---------- ---------- bmy_04990T0/1-852 ---------- ---------- ---------- ---------- ---------- 1051 1100 ENSP00000337797/1-910 ---------- --SIRRMGLA PK-------- ---------- ---------- ENSBTAP00000026157/1-913 ---------- --GIRHTSLA PG-------- ---------- ---------- BACU003626/1-1220 TLSGQAQLSG GGGAQPSMEA PAAPRPTATQ LTRDLLRSRG IAGLYKGLGA ENSTTRP00000011794/1-913 ---------- --GIQRTSLA PG-------- ---------- ---------- bmy_04990T0/1-852 ---------- --GIQRTSLA PG-------- ---------- ---------- 1101 1150 ENSP00000337797/1-910 ---------- ---------- DPALP----- ---------- ---GSSAPQP ENSBTAP00000026157/1-913 ---------- ---------- NLTSP----- ---------- ---DRLPSPS BACU003626/1-1220 TLLRDVPFSI VYFPLFANLN QLGRPASGEK SPFYVSFLAG CMAGSTAAVA ENSTTRP00000011794/1-913 ---------- ---------- DLGPP----- ---------- ---GSSASRS bmy_04990T0/1-852 ---------- ---------- DLGPP----- ---------- ---GSSASQS 1151 1200 ENSP00000337797/1-910 PEPAQA---- ---------- ---------- ---------- ---------- ENSBTAP00000026157/1-913 PEPAQA---- ---------- ---------- ---------- ---------- BACU003626/1-1220 VNPCDVVKTR LQTLQRGVNE DTYSGFLDCA RKILRNEGPT AFLKGAYCRA ENSTTRP00000011794/1-913 PEPAQT---- ---------- ---------- ---------- ---------- bmy_04990T0/1-852 AEPARA---- ---------- ---------- ---------- ---------- 1201 1250 ENSP00000337797/1-910 ---------- ---------- ---------- ENSBTAP00000026157/1-913 ---------- ---------- ---------- BACU003626/1-1220 LVIAPLFGIA QVVYFLGIAE TLLGLPRVQP ENSTTRP00000011794/1-913 ---------- ---------- ---------- bmy_04990T0/1-852 ---------- ---------- ----------