KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:28:13 2014 Check: 00 .. Name: ENSP00000220764/1-335 Len: 360 Check: 6951 Weight: 1.00 Name: ENSBTAP00000026202/1-329 Len: 360 Check: 4710 Weight: 1.00 Name: bmy_08036T0/1-182 Len: 360 Check: 4247 Weight: 1.00 Name: BACU020044/1-313 Len: 360 Check: 5968 Weight: 1.00 Name: ENSTTRP00000012447/1-329 Len: 360 Check: 5456 Weight: 1.00 // 1 50 ENSP00000220764/1-335 ---------- ---------M KLPARVFFTL GSRLPCGLAP RR-----FFS ENSBTAP00000026202/1-329 ---------- ---------M AVLNQLLFSW GR------GS RR-----FFS bmy_08036T0/1-182 MCGSVTAADR RSHFKVFNEY KIIDFFLIVN GN------DF KNQLQSNFFR BACU020044/1-313 ---------- ---------- ---------- ---------- -------FFR ENSTTRP00000012447/1-329 ---------- ---------M ALLSRVLFVW GR------GP RR-----FFR 51 100 ENSP00000220764/1-335 YGTKILYQNT EALQSKFFSP LQKAMLPPNS FQGKVAFITG GGTGLGKGMT ENSBTAP00000026202/1-329 YGTKTLYQNN EALQSKFFPP FPKVMLPANS FQGKVAFITG GGTGLGKGMT bmy_08036T0/1-182 YGTKILYQNN EDFQSKFFPP FQKVMLPPNS FQGKVAFITG GGTGLGKGMT BACU020044/1-313 YGTKILYQNN EDFQSKFFPP FQKVMLPPNS FQGKVAFITG GGTGLGKGMT ENSTTRP00000012447/1-329 YGTKILYQNN EGFQSKFFPP FQKVMLPPNS FQGKVAFITG GGTGLGKGMT 101 150 ENSP00000220764/1-335 TLLSSLGAQC VIASRKMDVL KATAEQISSQ TGNKVHAIQC DVRDPDMVQN ENSBTAP00000026202/1-329 TCLSSLGAQC VIASRKIDVL KATAEQISSQ TGNKVHAIQC DVRDPDMVQN bmy_08036T0/1-182 THLSSLGAQC VIASRKIDVL KATAEQISSQ TGNKVHAIQC DVRDPGMVQS BACU020044/1-313 THLSSLGAQC VIASRKIDAL KATAEQISSQ TGNKVHAIQC DVRDPGMVQS ENSTTRP00000012447/1-329 THLSSLGAQC VIASRKIDVL KATAEQISSQ TGNKVHAIQC DVRDPGMVQS 151 200 ENSP00000220764/1-335 TVSELIKVAG HPNIVINNAA GNFISPTERL SPNAWKTITD IVLNGTAFVT ENSBTAP00000026202/1-329 AVSETIKVIG HPDIVINNAA GNFISPSERL SPNAWKTITD IVLNGTAFVT bmy_08036T0/1-182 TVSELIKVIG HPDVSV---- ---------- ---------- ---------- BACU020044/1-313 TVLELIKVIG HPDIVINNAA GNFISPTERL SPNAWKTITD IVLNGTAFVT ENSTTRP00000012447/1-329 TVSELIKVVG HPDIVINNAA GNFISPTERL SPNAWKTITD IVLNGTAFVT 201 250 ENSP00000220764/1-335 LEIGKQLIKA QKGAAFLSIT TIYAETGSGF VVPSASAKAG VEAMSKSLAA ENSBTAP00000026202/1-329 LAIGKELIKA QKGASFLAIT TIYAETGSGF VVPSASAKAG VEALNKSLAA bmy_08036T0/1-182 ------MVMR RK-------- --YEA----- ---------- ---------- BACU020044/1-313 LEIGKQLIKA QKGASFLAIT TIYAETGSGF VVPSASAKAG VEAMSKSHLF ENSTTRP00000012447/1-329 LEIGKQLIKA QKGASFLAIT TIYAETGSGF VVPSASAKAG VEAMNXXXXX 251 300 ENSP00000220764/1-335 EWGKYGMRFN VIQP-GPIKT KGAFSRLDPT GTFEKEMIGR IPCGRLGTVE ENSBTAP00000026202/1-329 EWGKYGMRFN VIQP-GPIKT KGAFSRLDPT GAFEKEMIDR IPCGRLGTVE bmy_08036T0/1-182 ---------- ---------- ---------- --FDVDI--- ---------- BACU020044/1-313 ICVLISISLG AGNLIIFLIP KGAFSRLDPT GAFEKEIIDR IPCGRLGTVE ENSTTRP00000012447/1-329 XXXXXXXXXX XXXX-XXXXX XGAFSRLDPT GAFEKEVIDR IPCGRLGTVE 301 350 ENSP00000220764/1-335 ELANLAAFLC SDYASWINGA VIKFDGGEEV LISGEFNDLR KVTKEQWDTI ENSBTAP00000026202/1-329 ELANLAAFLC SDYASWINGA VIRFDGGEEV LISGEFNSLR KVTKDQWDII bmy_08036T0/1-182 ---------- ---------- ---------- ---------- --------TY BACU020044/1-313 ELANLAAFLC SDYASWINGA VIRFDGGEEV LISGEFNSLR KVTREQWDTI ENSTTRP00000012447/1-329 ELANLAAFLC SDYASWINGA VIRFDGGEEV LISGEFNSLR KVTREQWDTI 351 400 ENSP00000220764/1-335 EELIRKTKGS ENSBTAP00000026202/1-329 EGLIRKTKGS bmy_08036T0/1-182 QDVLRK---- BACU020044/1-313 EGLIRKTKGS ENSTTRP00000012447/1-329 EGLIRKTKGS