KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:28:14 2014 Check: 00 .. Name: ENSP00000352071/1-1156 Len: 1160 Check: 3060 Weight: 1.00 Name: ENSBTAP00000026215/1-1129 Len: 1160 Check: 4249 Weight: 1.00 Name: ENSTTRP00000001986/1-1147 Len: 1160 Check: 5720 Weight: 1.00 Name: bmy_22225T0/1-923 Len: 1160 Check: 6456 Weight: 1.00 Name: BACU003056/1-1115 Len: 1160 Check: 6344 Weight: 1.00 // 1 50 ENSP00000352071/1-1156 MSKLRMVLLE DSGSADFRRH FVNLSPFTIT VVLLLSACFV TSSLGGTDKE ENSBTAP00000026215/1-1129 -----MVLHD NSGSAGFKRC SVHFGPFTLA VVSVLYACLI TSALGGTDKE ENSTTRP00000001986/1-1147 MDKLRMVLHE NSGSTEFRRC SARLSPFAIA VVSVLSACLV TSSLGGTEKE bmy_22225T0/1-923 -----MVLHE NSGSTEFRRC SAHLSPFTIA VVSVLSACLV TRSLGGTDKE BACU003056/1-1115 MDKLRMVLHE NSGSTEFRRY SAHLSPFTIA VVSVLSACLV TRSLGGTDKE 51 100 ENSP00000352071/1-1156 LRLVDGENKC SGRVEVKVQE EWGTVCNNGW SMEAVSVICN QLGCPTAIKA ENSBTAP00000026215/1-1129 LRLVAGQTKC SGRVEVKVQE EWGTVCNTGW DLAAVSVVCK QLGCPSVIKA ENSTTRP00000001986/1-1147 LRLTAGENKC SGRVEVKVQE EWGTVCNNGW DLAAVSVVCR QLECPTVIKA bmy_22225T0/1-923 LRLTAGENKC SGRVEVKVQE EWGTVCNNGW GLSAVSVVCR QLGCPTVIKA BACU003056/1-1115 LRLTAGENKC SGRVEVKVQE EWGTVCNNGW DLSAVSVVCR QLGCPTVIKA 101 150 ENSP00000352071/1-1156 PGWANSSAGS GRIWMDHVSC RGNESALWDC KHDGWGKHSN CTHQQDAGVT ENSBTAP00000026215/1-1129 TGWTNSSAGT GRIWMDHVSC RGNESALWDC KHEGWGKH-N CTHQQDVGVT ENSTTRP00000001986/1-1147 TGWANSSAGS GRIWMDHVSC RGNESALWDC KHDGWGKH-N CTHQQDVGIT bmy_22225T0/1-923 TGWANSSAGS GRIWMDHVSC RGNESTLWDC KHDGWGKH-N CTHQQDVGIT BACU003056/1-1115 TGWANSSAGS GRIWMDHVSC RGNESALWDC KHDGWGKH-N CTHQQDVGIT 151 200 ENSP00000352071/1-1156 CSDGSNLEMR LTRGGNMCSG RIEIKFQGRW GTVCDDNFNI DHASVICRQL ENSBTAP00000026215/1-1129 CSDGSDLEMR LMNGGNRCSG RIEIKFQGQW GTVCDDNFNL DHASVVCKQL ENSTTRP00000001986/1-1147 CSDGSDLEMR LMNGGNRCSG RIEVKFQGQW GTVCDDNFNI NHASVVCKQL bmy_22225T0/1-923 CSDGSDLEMR LMNGGNRCSG RIEVKFQGQW GTVCDDNFNI DHASVVCKQL BACU003056/1-1115 CSDGSDLEMR LMNGGNRCSG RIEVKFQGQW GTVCDDNFNI DHASVVCKQL 201 250 ENSP00000352071/1-1156 ECGSAVSFSG SSNFGEGSGP IWFDDLICNG NESALWNCKH QGWGKHNCDH ENSBTAP00000026215/1-1129 GCGSAVSFSG SANFGEGSGP IWFDDLVCHG NESALWNCRH EGWGKHNCDH ENSTTRP00000001986/1-1147 ECGSAVSFSG SANFGEGSGP IWFDDLVCNG TESALWNCKH EGWGKHNCDH bmy_22225T0/1-923 ECGSAVSFSG SANFGEGSGP IWFDDLVCNG NESALWNCKH EGWGKHNCDH BACU003056/1-1115 ECGSAVSFSG SANFGEGSGP IWFDDLVCNG NESALWNCKH EGWGKHNCDH 251 300 ENSP00000352071/1-1156 AEDAGVICSK GADLSLRLVD GVTECSGRLE VRFQGEWGTI CDDGWDSYDA ENSBTAP00000026215/1-1129 AEDAGVICLE GADLSLRLVD GVTKCSGRLE VRFQGEWGTV CDDGWDSDDA ENSTTRP00000001986/1-1147 AEDAGVICLE GADLSLRLVD GVTECSGRLE VKFQGEWGTV CDDGWDSNDA bmy_22225T0/1-923 AEDAGVICLE GADLSLRLVD GVTECSGRLE VKFQGEWGTV CDDGWDSNDA BACU003056/1-1115 AEDAGVICLE GADLSLRLVD GVTECSGRLE VKFQGEWGTV CDDGWDSNDA 301 350 ENSP00000352071/1-1156 AVACKQLGCP TAVTAIGRVN ASKGFGHIWL DSVSCQGHEP AIWQCKHHEW ENSBTAP00000026215/1-1129 AVACQQLGCP TAITAVGRVN ASEGTGHIWL DSVSCQGHES AVWQCRHHEW ENSTTRP00000001986/1-1147 AVACKQLGCP TAVTAIGRVN ASEGVGHIWL DSVSCHGHES ALWQCKHQEW bmy_22225T0/1-923 AVACKQLGCP TAVTAIGRVN ASEGIGHIWL DSVSCHGHES ALWQCKHQEW BACU003056/1-1115 AVACKQLGCP TAVTAIGRVN ASEGIGHIWL DSVSCHGHES ALWQCKHQEW 351 400 ENSP00000352071/1-1156 GKHYCNHNED AGVTCSDGSD LELRLRGGGS RCAGTVEVEI QRLLGKVCDR ENSBTAP00000026215/1-1129 GKHYCNHNED AGVTCSDGSD LELRLKGGGS RCAGTVEVEI QKLIGKVCDR ENSTTRP00000001986/1-1147 GKHYCNHNED AGVICSDGSD LELRLKGGGS HCAGTVEVEI QKLIGKVCDR bmy_22225T0/1-923 GKHYCNHNED AGVTCSDGSD LGLRLKGGGS HCAGTVEVEI QKLIGKVCDR BACU003056/1-1115 GKHYCNHNED AGVTCSDGSD LGLRLKGGGS HCAGTVEVEI QKLIGKVCDR 401 450 ENSP00000352071/1-1156 GWGLKEADVV CRQLGCGSAL KTSYQVYSKI QATNTWLFLS SCNGNETSLW ENSBTAP00000026215/1-1129 SWGLKEADVV CKQLGCGSAL RTSYQVYSKI QATNTWLFLN NCNGNETSIW ENSTTRP00000001986/1-1147 GWGLKEADVV CTQLGCGSAL KTSYQVYSKI KATNTWLFLS SCNGNETSLW bmy_22225T0/1-923 GWGLKQADVV CRQLGCGSAL KTSYQAYSKI KATNTWLFLS SCNGNETSLW BACU003056/1-1115 GWGLKEADVV CRQLGCGSAL KTSYQAYSKI KATNTWLFLS SCNGNETSLW 451 500 ENSP00000352071/1-1156 DCKNWQWGGL TCDHYEEAKI TCSAHREPRL VGGDIPCSGR VEVKHGDTWG ENSBTAP00000026215/1-1129 DCKNWQWGGL SCEHYHEAKV TCSAHREPRL VGGDIPCSGR VEVKHGDTWG ENSTTRP00000001986/1-1147 DCKNWQWGGL SCDHYDEARV TCSAHREPRL VGGDIPCSGR VEVKHGDTWG bmy_22225T0/1-923 DCKNWQW--- ---------- ---AHREPKL VGGDIPCSGR VEVKHGDSWG BACU003056/1-1115 DCKNWQWGGL SCDHYDEAKV TCSAHREPKL VGGDIPCSGR VEVKHGDTWG 501 550 ENSP00000352071/1-1156 SICDSDFSLE AASVLCRELQ CGTVVSILGG AHFGEGNGQI WAEEFQCEGH ENSBTAP00000026215/1-1129 TICDSDFSLE SASVLCRELE CGSVVSILGG AHFGEGNGQI WAEEFQCEGN ENSTTRP00000001986/1-1147 TVCDSDFSLE AASVLCRELQ CGTVVSILGG AHFGEGNGQI WAEEFQCEGH bmy_22225T0/1-923 TVCDSDFSLE AASVLCRELQ CGTVVSILGG AHFGEGNGQI WAEEFQCEGH BACU003056/1-1115 TVCDSDFSLE AASVLCRELQ CGTVVSILGG AHFGEGNGQI WAEEFQCEGH 551 600 ENSP00000352071/1-1156 ESHLSLCPVA PRPEGTCSHS RDVGVVCSRY TEIRLVNGKT PCEGRVELKT ENSBTAP00000026215/1-1129 ESHLSLCPVA PRLDGTCSHS KDIGVVCSRY TEVRLVGGNT PCEGRVEVKI ENSTTRP00000001986/1-1147 ESHLSLCPVA PRPDGTCRHS RDVGVVCSRY TEVRLAHGKS PCEGRVELKI bmy_22225T0/1-923 ESHLSLCPVA PRPDGTCSHS RDVGVVCSRY TEVRLVNGQS PCEGRVELKI BACU003056/1-1115 ESHLSLCPVA PRPDGTCSHS RDVGVVCSRY TEVRLVNGQS PCEGRVELKI 601 650 ENSP00000352071/1-1156 LGAWGSLCNS HWDIEDAHVL CQQLKCGVAL STPGGARFGK GNGQIWRHMF ENSBTAP00000026215/1-1129 LGTWGPLCNS HWDMEDAHVL CQQLKCGVAA SIPGRAPFGK GSGQPWRHMF ENSTTRP00000001986/1-1147 LGTWGSLCNS HWDMEDAHVL CQQLKCGVAL STPRGAPFGK GSGQVWRHMF bmy_22225T0/1-923 LGTWGSLCNS HWDMEDAHVF CQQLKCGVAL STPRGAPFGK GSGQVWRHMF BACU003056/1-1115 LGTWGSLCNS HWDMEDAHVF CQQLKCGVAL SAPRGAPFGK GSGQVWRHMF 651 700 ENSP00000352071/1-1156 HCTGTEQHMG DCPVTALGAS LCPSEQVASV ICSGNQSQTL SSCNSSSLGP ENSBTAP00000026215/1-1129 HCTGTEQHMG DCPVTALGAS LCPEGQVASV ICSGNRSQTL YPCNSSSSDP ENSTTRP00000001986/1-1147 HCTGTERHMG DCPMTALGAS LCSLGQVASV ICSGNQSQTL PPCNLSSSDP bmy_22225T0/1-923 HCTGTERHMG DCPMTALGAS LCSLGQVASV ICSGNQSQTL PPCNSSSSDP BACU003056/1-1115 HCTGTERHMG DCPMTALGAS LCPLGQVASV ICSGNQSQTL PPCNSSSSDP 701 750 ENSP00000352071/1-1156 TRPTIPEESA VACIESGQLR LVNGGGRCAG RVEIYHEGSW GTICDDSWDL ENSBTAP00000026215/1-1129 ESSVVLEENG VPCIGSGQLR LVNGGGRCAG RIEVYHEGSW GTICDDSWDL ENSTTRP00000001986/1-1147 TSSLFSEESG VPCIGSGQLR LVNGSGRCAG RIEIYHEGSW GTICDDSWDL bmy_22225T0/1-923 TSSIFSEESG VPCIGSGQLR LVNGGGRCAG RIEIYHEGSW GTICDDSWDL BACU003056/1-1115 TSSIFSEESG VPCIGSGQLR LVNGGGRCAG RIEIYHEGSW GTICDDSWDL 751 800 ENSP00000352071/1-1156 SDAHVVCRQL GCGEAINATG SAHFGEGTGP IWLDEMKCNG KESRIWQCHS ENSBTAP00000026215/1-1129 DDAHVVCRQL GCGVAINATG SAHFGEGSGP IWLDEVNCNG KEPRISQCRS ENSTTRP00000001986/1-1147 NDAHVVCKQL GCGGAINAIG SAHFGEGTGP IWLDEVNCNG KESRIWQCHS bmy_22225T0/1-923 NDAQVVCKQL GCGGAINAIG SAHFGEGTGP IWLDEVNCNG KESRIWQCHS BACU003056/1-1115 NDAHVVCRQL GCGGAINAVG SAHFGEGTGP IWLDEVNCNG KESRIWQCHS 801 850 ENSP00000352071/1-1156 HGWGQQNCRH KEDAGVICSE FMSLRLTSEA SREACAGRLE VFYNGAWGTV ENSBTAP00000026215/1-1129 HGWGRQNCRH KEDAGVICSE FMSLRLISDS SSETCAGRLE VFYNGAWGSV ENSTTRP00000001986/1-1147 HGWGRHNCRH KEDAGVICSE FMSLRLISET SRETCAGHLE VFYNGVWGSV bmy_22225T0/1-923 HGWGRHNCRH KEDAGVICSE FMSLRLISET SRETCAGHLE VFYNGAWGSV BACU003056/1-1115 HGWGRHNCRH KEDAGVICSE FMSLRLISET SRETCAGHLE VFYNGAWGSV 851 900 ENSP00000352071/1-1156 GKSSMSETTV GVVCRQLGCA DKGKINPASL DKAMSIPMWV DNVQCPKGPD ENSBTAP00000026215/1-1129 GKSDMSATTV GVVCRQLGCT DKGSIRPAPS DKVENRYMWV DNVRCPKGPE ENSTTRP00000001986/1-1147 GKSNMSAATV GVVCRQLGCA DKGSIIPASS DKTMSGHMWV DNVQCPKGPD bmy_22225T0/1-923 GKSNMSAATV GVVCRQLGCA DKGSIIPASS DKTMSRHMWV DNVQCPKGPD BACU003056/1-1115 GKSNMSAATV GVVCRQLGCA DRGSIIPASS DKTMSRHMWV DNVQCPKGPD 901 950 ENSP00000352071/1-1156 TLWQCPSSPW EKRLASPSEE TWITCDNKIR LQEGPTSCSG RVEIWHGGSW ENSBTAP00000026215/1-1129 TLWQCPSSPW KRRLASPSEE TWITCADKIR LQEGTTNCSG RVEVWHGGSW ENSTTRP00000001986/1-1147 TLWQCPSSPW KKRLASPSEE TWISCANKIR LQEGTTNCSG RVEVWHGGSW bmy_22225T0/1-923 TLWQCPSSPW KKRLASPSEE TWITCASE-- ---------- ---------- BACU003056/1-1115 TLWQCPSSPW KKRLASPSEE TWITCANKIR LQEGTTNCSG RVEVWHGGSW 951 1000 ENSP00000352071/1-1156 GTVCDDSWDL DDAQVVCQQL GCGPALKAFK EAEFGQGTGP IWLNEVKCKG ENSBTAP00000026215/1-1129 GTVCDDSWDL NDAQVVCRQL GCGLALEAGK EAAFGQGTGP IWLNEVKCKG ENSTTRP00000001986/1-1147 GTVCDDSWDL DDAQVVCQQL GCGLALEAGK EAAFGQGTGP IWLNEVKCKG bmy_22225T0/1-923 ---------- ---------- ---------- ---------- ---------- BACU003056/1-1115 GTVCDDSWDL DDAQVVCRQL GCGLALEAGK EAAFGQGTGP IWLNEVKCKG 1001 1050 ENSP00000352071/1-1156 NESSLWDCPA RRWGHSECGH KEDAAVNCTD ISVQKTPQKA TTGRSSRQSS ENSBTAP00000026215/1-1129 NESSLWDCPA RSWGHSDCGH KEDASVKCSE IAESKGSVKA AG-----HSS ENSTTRP00000001986/1-1147 NESSLWDCPA LSWGHSDCGH KEDASVKCSE IAKNEGSLNA TG-----HSS bmy_22225T0/1-923 ---------- ---------- ---------- ---------- ---------- BACU003056/1-1115 NESSLWDCPA LSWGHSDCGH KEDASVKCSE IAKNEGSLNA TG-----HSS 1051 1100 ENSP00000352071/1-1156 FIAVGILGVV LLAIFVALFF LTKKRRQRQR LAVSSRGENL VHQIQYREMN ENSBTAP00000026215/1-1129 TVALGILGVI LLAFLIATLL WIQRRRQRQR LAVSSRGENS VHEIQYREMN ENSTTRP00000001986/1-1147 VVAFGILGAI LFVSLTVLLL WIQKQRQRQR LTVSSRGENS VHQIQYREMN bmy_22225T0/1-923 ---------- ---------- ---------- ---------- -YPFDYMKLP BACU003056/1-1115 VVALGILGVI LFASLTVLLL WIQKRRQRQR LTVSSRGENS VHQIQYREMN 1101 1150 ENSP00000352071/1-1156 SCLNADDLDL MNSSE----N SHESADFSAA ELISVSKFLP ISGMEKEAIL ENSBTAP00000026215/1-1129 SCLKADDLDL YNSSGLWVLR GSIALGFR-- ---------- --------LV ENSTTRP00000001986/1-1147 PCLKADDLDL QYSSE----- NSNEDGFNDA GLISVSKSLP ISG-KKETTL bmy_22225T0/1-923 FC-------- ---------- GSTSIF---- ---------- ---------- BACU003056/1-1115 SCLKADDLDL QNSSG----- DHSEVQ---- ---------- ---------- 1151 1200 ENSP00000352071/1-1156 SHTEKENGNL ENSBTAP00000026215/1-1129 TAAEAERHST ENSTTRP00000001986/1-1147 RYNEKENEL- bmy_22225T0/1-923 ---------- BACU003056/1-1115 ----------