KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:28:15 2014 Check: 00 .. Name: BACU000617/1-1179 Len: 1240 Check: 6073 Weight: 1.00 Name: bmy_05916T0/1-802 Len: 1240 Check: 1055 Weight: 1.00 Name: ENSP00000353732/1-547 Len: 1240 Check: 2452 Weight: 1.00 Name: ENSTTRP00000003685/1-547 Len: 1240 Check: 2523 Weight: 1.00 Name: ENSBTAP00000026221/1-547 Len: 1240 Check: 2164 Weight: 1.00 // 1 50 BACU000617/1-1179 MRANWARTTA RFPLKDGPRL QAWLRHMGRE HWVPSCYQHL CSEHFAPSCF bmy_05916T0/1-802 -----MTKTD PAPMAPPLRA EG-EEEEEED EPVPE----- -----PPSPT ENSP00000353732/1-547 -----MTKTD PAPMAPPPRG EE-EEEEEED EPVPE----- -----APSPT ENSTTRP00000003685/1-547 -----MTKTD PAPMAPPLRA QG-EEEEEED EPVPE----- -----PPSPT ENSBTAP00000026221/1-547 -----MTKTD PAPMAPPLRA EE-EEEEEED EPVPE----- -----PPSPT 51 100 BACU000617/1-1179 QWRWGVRYLR PDAVPSIFSR ALPAKDGRKG VSPQFAWGDL GPL-TTLAFT bmy_05916T0/1-802 QERRQKPVVH PSA------- --PA------ ---------- -PLPKDYAFT ENSP00000353732/1-547 QERRQKPVVH PSA------- --PA------ ---------- -PLPKDYAFT ENSTTRP00000003685/1-547 QERRQKPVVH PSA------- --PA------ ---------- -PLPKDYAFT ENSBTAP00000026221/1-547 QERRQKPVVH PSA------- --PA------ ---------- -PLPKDYAFT 101 150 BACU000617/1-1179 FFDPNDPACQ EILFDPQTTI PELFAIVRQW VPQVQHKIDV IGNEILRRGC bmy_05916T0/1-802 FFDPNDPACQ EILFDPQTTI PELFAIVRQW VPQVQHKIDV IGNEILRRGC ENSP00000353732/1-547 FFDPNDPACQ EILFDPQTTI PELFAIVRQW VPQVQHKIDV IGNEILRRGC ENSTTRP00000003685/1-547 FFDPNDPACQ EILFDPQTTI PELFAIVRQW VPQVQHKIDV IGNEILRRGC ENSBTAP00000026221/1-547 FFDPNDPACQ EILFDPQTTI PELFAIVRQW VPQVQHKIDV IGNEILRRGC 151 200 BACU000617/1-1179 HVNDRDGLTD MTLLHYACKA GAHGVGDPAA AVRLSQQLLA LGADVTLRSR bmy_05916T0/1-802 HVNDRDGLTD MTLLHYACKA GAHGVGDPAA AVRLSQQLLA LGADVTLRSR ENSP00000353732/1-547 HVNDRDGLTD MTLLHYACKA GAHGVGDPAA AVRLSQQLLA LGADVTLRSR ENSTTRP00000003685/1-547 HVNDRDGLTD MTLLHYACKA GAHGVGDPAA AVRLSQQLLA LGADVTLRSR ENSBTAP00000026221/1-547 HVNDRDGLTD MTLLHYACKA GAHGVGDPAA AVRLSQQLLA LGADVTLRSR 201 250 BACU000617/1-1179 WTNMNALHYA AYFDVPDLVR VLLKGARPRV VNSTCSDFNH GSALHIAASN bmy_05916T0/1-802 WTNMNALHYA AYFDVPDLVR VLLKGARPRV VNSTCSDFNH GSALHIAASN ENSP00000353732/1-547 WTNMNALHYA AYFDVPDLVR VLLKGARPRV VNSTCSDFNH GSALHIAASS ENSTTRP00000003685/1-547 WTNMNALHYA AYFDVPDLVR VLLKGARPRV VNSTCSDFNH GSALHIAASN ENSBTAP00000026221/1-547 WTNMNALHYA AYFDVPDLVR VLLKGARPRV VNSTCSDFNH GSALHIAASN 251 300 BACU000617/1-1179 LCLGAAKCLL EHGANPALRN RKGQVPAEVV PDPMDMSLDK AEAALVAKEL bmy_05916T0/1-802 LCLGAAKCLL EHGANPALRN RKGQVPAEVV PDPMDMSLDK AEAALVAKEL ENSP00000353732/1-547 LCLGAAKCLL EHGANPALRN RKGQVPAEVV PDPMDMSLDK AEAALVAKEL ENSTTRP00000003685/1-547 LCLGAAKCLL EHGANPALRN RKGQVPAEVV PDPMDMSLDK AEAALVAKEL ENSBTAP00000026221/1-547 LCLGAAKCLL EHGANPALRN RKGQVPAEVV PDPMDMSLDK AEAALVAKEL 301 350 BACU000617/1-1179 RTLLEEAVPL SCTLPKVTLP NYDNVPGNLM LSALGLRLGD RVLLDGQKTG bmy_05916T0/1-802 RTLLEEAVPL SCTLPKVTLP NYDNVPGNLM LSALGLRLGD RVLLDGQKTG ENSP00000353732/1-547 RTLLEEAVPL SCALPKVTLP NYDNVPGNLM LSALGLRLGD RVLLDGQKTG ENSTTRP00000003685/1-547 RTLLEEAVPL SCALPKVTLP NYDNVPGNLM LSALGLRLGD RVLLDGQKTG ENSBTAP00000026221/1-547 RTLLEEAVPL SCALPKVTLP NYDNVPGNLM LSALGLRLGD RVLLDGQKTG 351 400 BACU000617/1-1179 TLRFCGTTEF ASGQWVGVEL DEPEGKNDGS VGGVRYFICP PKQ------- bmy_05916T0/1-802 TLRFCGTTEF ASGQWVGVEL DEPEGKNDGS VGGVRYFICP PKQGQSHWGP ENSP00000353732/1-547 TLRFCGTTEF ASGQWVGVEL DEPEGKNDGS VGGVRYFICP PKQ------- ENSTTRP00000003685/1-547 TLRFCGTTEF ASGQWVGVEL DEPEGKNDGS VGGVRYFICP PKQ------- ENSBTAP00000026221/1-547 TLRFCGTTEF ASGQWVGVEL DEPEGKNDGS VGGVRYFICP PKQ------- 401 450 BACU000617/1-1179 ---------- ---------- ---------- ---------- --GLFASVSK bmy_05916T0/1-802 EGWWWGPLSS SDAAAECWGW EVMGGGQRAE AWTTPSPGSV PPGLFASVSK ENSP00000353732/1-547 ---------- ---------- ---------- ---------- --GLFASVSK ENSTTRP00000003685/1-547 ---------- ---------- ---------- ---------- --GLFASVSK ENSBTAP00000026221/1-547 ---------- ---------- ---------- ---------- --GLFASVSK 451 500 BACU000617/1-1179 ISKAVDAPPS SVTSTPRTPR MDFSRVTGKG RREHKGKKKP PSSPSLGSLQ bmy_05916T0/1-802 ISKAVDAPPS SVTSTPRTPR MDFSRVTGKG RREHKGKKKP PSSPSLGSLQ ENSP00000353732/1-547 ISKAVDAPPS SVTSTPRTPR MDFSRVTGKG RREHKGKKKT PSSPSLGSLQ ENSTTRP00000003685/1-547 ISKAVDAPPS SVTSTPRTPR MDFSRVTGKG RREHKGKKKP SSSPSLGSLQ ENSBTAP00000026221/1-547 ISKAVDAPPS SVTSTPRTPR MDFSRVTGKG RREHKGKKKP SSSPSLGSLQ 501 550 BACU000617/1-1179 QREGAKAEVG DQVLVAGQKQ GIVRFYGKTD FAPGYWYGIE LDQPTGKHDG bmy_05916T0/1-802 QREGAKAEVG DQVLVAGQKQ GIVRFYGKTD FAPGYWYGIE LDQPTGKHDG ENSP00000353732/1-547 QRDGAKAEVG DQVLVAGQKQ GIVRFYGKTD FAPGYWYGIE LDQPTGKHDG ENSTTRP00000003685/1-547 QREGAKAEVG DQVLVAGQKQ GIVRFYGKTD FAPGYWYGIE LDQPTGKHDG ENSBTAP00000026221/1-547 QREGAKAEVG DQVLVAGQKQ GIVRFYGKTD FAPGYWYGIE LDQPTGKHDG 551 600 BACU000617/1-1179 SVFGVRYFTC PQRHGVFAPA SRIQRIGGST DPPGDNVGAK KVHQVT---- bmy_05916T0/1-802 SVFGVRYFTC PPRHGVFAPA SRIQRIGGST DPPGDNVGAK KVHQVTRMTG ENSP00000353732/1-547 SVFGVRYFTC PPRHGVFAPA SRIQRIGGST DSPGDSVGAK KVHQVT---- ENSTTRP00000003685/1-547 SVFGVRYFTC PPRHGVFAPA SRIQRIGGST DPPGDNVGAK KVHQVT---- ENSBTAP00000026221/1-547 SVFGVRYFTC PPKHGVFAPA SRIQRIGGST DPPGDNVGAK KVHQVT---- 601 650 BACU000617/1-1179 -----MTQPK RTFTTVRTPK DIASENSISR ELRPCLCTLA GYSNL--VFN bmy_05916T0/1-802 YTDLMSMEDQ DARVPALEPF RVEQAPPVIY YVPDFICKEE EEYLLRQVFN ENSP00000353732/1-547 -----MTQPK RT-------- ---------- ---------- ---------- ENSTTRP00000003685/1-547 -----MTQPK RT-------- ---------- ---------- ---------- ENSBTAP00000026221/1-547 -----MTQPK RT-------- ---------- ---------- ---------- 651 700 BACU000617/1-1179 APKPKWTQLS GRKLQNWGGL PHPRGMVPER LPPWLQRYVD KVSDLSLFGG bmy_05916T0/1-802 APKPKWTQLS GRKLQNWGGL PHPRGMVPER LPPWLQRYVD KVSDLSLFGG ENSP00000353732/1-547 -----FTTV- ---------- ---------- ---------- ---------- ENSTTRP00000003685/1-547 -----FTTV- ---------- ---------- ---------- ---------- ENSBTAP00000026221/1-547 -----FTTV- ---------- ---------- ---------- ---------- 701 750 BACU000617/1-1179 LPANHVLVNQ YLPGEGIMPH EDGPLYYPTV STISLGSHTM LDFYEPRQPE bmy_05916T0/1-802 LPANHVLVNQ YLPGEGIMPH EDGPLYYPTV STISLGSHTM LDFYEPRQPE ENSP00000353732/1-547 ---------- ---------- ---------- ---------- ------RTPK ENSTTRP00000003685/1-547 ---------- ---------- ---------- ---------- ------RTPK ENSBTAP00000026221/1-547 ---------- ---------- ---------- ---------- ------RTPK 751 800 BACU000617/1-1179 DDDPTEQPRP PPRPATSLLL EPCSLLVLRG TAYTRLLHGI AAASVDALDA bmy_05916T0/1-802 DDDPTEQPRP PPRPATSLLL EPRSLLVLRG TAYTRLLHGI AAASVDALDA ENSP00000353732/1-547 D--------- ---------- ------IASE NSISRLLF-- ---------- ENSTTRP00000003685/1-547 D--------- ---------- ------IASE NSISRLLF-- ---------- ENSBTAP00000026221/1-547 D--------- ---------- ------IASE NSISRLLF-- ---------- 801 850 BACU000617/1-1179 ASLPRNAAAC PSAQAGARLV RGTRVSLTIR RVPRVLRAGL LLSKLPNMAL bmy_05916T0/1-802 ASLPRNAAAC PSAQAGARLV RGTRVSLTIR RVPRVLRAGL LLSK------ ENSP00000353732/1-547 --------CC WF-------- ---------- --PWMLRAEM QS-------- ENSTTRP00000003685/1-547 --------CC WF-------- ---------- --PWMLRAEM QS-------- ENSBTAP00000026221/1-547 --------CC WF-------- ---------- --PWMLRAEM QS-------- 851 900 BACU000617/1-1179 PPCLGPTPPS EPFSHPPGAP RELNASGCTI CSASGEERIR SEQAQKLGQD bmy_05916T0/1-802 ---------- ---------- ---------- ---------- ---------- ENSP00000353732/1-547 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003685/1-547 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026221/1-547 ---------- ---------- ---------- ---------- ---------- 901 950 BACU000617/1-1179 SLDPPEPFQG GPRGTESAAG LPRLPTPPSH EDSAGAKHRE RPISGREVLE bmy_05916T0/1-802 ---------- ---------- ---------- ---------- ---------- ENSP00000353732/1-547 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003685/1-547 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026221/1-547 ---------- ---------- ---------- ---------- ---------- 951 1000 BACU000617/1-1179 AEQDSLHLCL LGLGLRLQDL EQGLGPWASA QSRMVQLQAL QADLHGAAER bmy_05916T0/1-802 ---------- ---------- ---------- ---------- ---------- ENSP00000353732/1-547 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003685/1-547 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026221/1-547 ---------- ---------- ---------- ---------- ---------- 1001 1050 BACU000617/1-1179 LDALLVFGEG LAQRSEPQAR ASLEQVLRAF RAHRDSIFRQ LWRLQAQLIS bmy_05916T0/1-802 ---------- ---------- ---------- ---------- ---------- ENSP00000353732/1-547 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003685/1-547 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026221/1-547 ---------- ---------- ---------- ---------- ---------- 1051 1100 BACU000617/1-1179 YSLVFEEAST LEQDLEVEGD SDGTGPGGVW GPWAPSSLPT PAELEWDPAG bmy_05916T0/1-802 ---------- ---------- ---------- ---------- ---------- ENSP00000353732/1-547 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003685/1-547 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026221/1-547 ---------- ---------- ---------- ---------- ---------- 1101 1150 BACU000617/1-1179 DVGGLGPLGQ RTTWTPGTPC ELCGRRGPQG RGQSLEDMLM SGLSHRKHLT bmy_05916T0/1-802 ---------- ---------- ---------- ---------- ---------- ENSP00000353732/1-547 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003685/1-547 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026221/1-547 ---------- ---------- ---------- ---------- ---------- 1151 1200 BACU000617/1-1179 GHRRRSLLRK SQDKMRQVSP NVQDVMLEVD PGAPTPASRR PLTFLLLLFF bmy_05916T0/1-802 ---------- ---------- ---------- ---------- ---------- ENSP00000353732/1-547 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003685/1-547 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026221/1-547 ---------- ---------- ---------- ---------- ---------- 1201 1250 BACU000617/1-1179 LLLVGATLLL PMSGGSCCSP ARLARTPYLV LSYVNGPPPV bmy_05916T0/1-802 ---------- ---------- ---------- ---------- ENSP00000353732/1-547 ---------- ---------- ---------- ---------- ENSTTRP00000003685/1-547 ---------- ---------- ---------- ---------- ENSBTAP00000026221/1-547 ---------- ---------- ---------- ----------