KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 4  Type: P  Thu May 15 17:28:19 2014  Check: 00 ..

 Name: ENSBTAP00000026242/1-199  Len:    203  Check:  9772  Weight:  1.00
 Name: ENSP00000354387/1-199     Len:    203  Check:  2545  Weight:  1.00
 Name: bmy_11684T0/1-189         Len:    203  Check:  3240  Weight:  1.00
 Name: ENSTTRP00000002890/1-203  Len:    203  Check:  8491  Weight:  1.00

//


                          1                                                   50
ENSBTAP00000026242/1-199  YSLFFFFWFS ----VTNGGK TTLAKNLQKH LPNCSVLSQD DFFKPESEIE 
ENSP00000354387/1-199     MKTFIIGISG ----VTNSGK TTLAKNLQKH LPNCSVISQD DFFKPESEIE 
bmy_11684T0/1-189         ---------- ----VTNGGK TTLAKNLQKR LPNCSIISQD NFFKPQSEIE 
ENSTTRP00000002890/1-203  MGKRRHSKGG EKSCVTNGGK TTLAKNLQKR LPNCSIISQD NFFKPESEIE 


                          51                                                 100
ENSBTAP00000026242/1-199  TDENGFLQYD VLEALNMEEM MSAISCWMEN PTHSLASTHE ESIKEIPILI 
ENSP00000354387/1-199     TDKNGFLQYD VLEALNMEKM MSAISCWMES ARHSVVSTDQ ESAEEIPILI 
bmy_11684T0/1-189         TDENGFLQYD VLEALNMEEM MSAISCWMES AAHPLASTDR GNTEEIPILI 
ENSTTRP00000002890/1-203  TDENGFLQYD VLEALNMEEM MSAISHWMES AAHPLASRDR GNTEEIPILI 


                          101                                                150
ENSBTAP00000026242/1-199  IEGFLLFHYK PLDTIWNRRY FLTIPYEECK RRRSTRVYKP PDAPGYFDGH 
ENSP00000354387/1-199     IEGFLLFNYK PLDTIWNRSY FLTIPYEECK RRRSTRVYQP PDSPGYFDGH 
bmy_11684T0/1-189         IEGFLLYNYK PLDTIWNRSY FLTIPYEECK RRRSTRIYEP PDTPGYFEGH 
ENSTTRP00000002890/1-203  IEGFLLYNYK PLDTIWNRSY FLTIPYEECK RRRSTRIYEP PDTPGYFEGH 


                          151                                                200
ENSBTAP00000026242/1-199  VWPMYLKHRK EMENVSWEIV YLDGTKSEED LFSQVYEDLI QELAKQKGLK 
ENSP00000354387/1-199     VWPMYLKYRQ EMQDITWEVV YLDGTKSEED LFLQVYEDLI QELAKQKCLQ 
bmy_11684T0/1-189         VWPMYLKHRK EMENISWEIV YLDGTKSEED LFSQVYEDLI QELAKQKCLQ 
ENSTTRP00000002890/1-203  VWPMYLKHRK EMENISWEIV YLDGTKSEED LFSQVYEDLM QQLAKQNCLQ 


                          201                                                250
ENSBTAP00000026242/1-199  LLL 
ENSP00000354387/1-199     VTA 
bmy_11684T0/1-189         VTA 
ENSTTRP00000002890/1-203  VTA