KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:28:22 2014 Check: 00 .. Name: ENSTTRP00000001306/1-832 Len: 893 Check: 8777 Weight: 1.00 Name: ENSP00000264377/1-832 Len: 893 Check: 6807 Weight: 1.00 Name: ENSBTAP00000026254/1-833 Len: 893 Check: 7338 Weight: 1.00 Name: bmy_01676T0/1-640 Len: 893 Check: 7692 Weight: 1.00 Name: BACU014161/1-704 Len: 893 Check: 7143 Weight: 1.00 // 1 50 ENSTTRP00000001306/1-832 MKPPGNSYGR PPVEGCSLTR ASSCSRGGPA GPATIRTPAR APPYRLLLAL ENSP00000264377/1-832 MKPPGSSSRQ PPLAGCSLAG ASCGPQRGPA GSVPASAPAR TPPCRLLLVL ENSBTAP00000026254/1-833 MKPPGNSSRR PPLAGCSLAR ASSGPRGGSA APAPIRALAR APPCRLLLVL bmy_01676T0/1-640 ---------- ---------- ---------- ---------- ---------- BACU014161/1-704 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000001306/1-832 LLLPPLAASS RPRAWRAAAP SAPHWNETAE NNLGVLADED NTLQQNSSSN ENSP00000264377/1-832 LLLPPLAASS RPRAWGAAAP SAPHWNETAE KNLGVLADED NTLQQNSSSN ENSBTAP00000026254/1-833 FLLPPLAASS RPRAWGAAAP SAPYWNETAG KKLGVLADEN NTLQQNSSSN bmy_01676T0/1-640 ---------- ---------- ---------- ---------- ---------- BACU014161/1-704 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000001306/1-832 SSYSNAMQKE ITLPSRLVYY INQDSESPYH VLDTKARHQQ KHNKAVHLAQ ENSP00000264377/1-832 ISYSNAMQKE ITLPSRLIYY INQDSESPYH VLDTKARHQQ KHNKAVHLAQ ENSBTAP00000026254/1-833 SSSSHAMQKE ITLPSRLIYY INQDSESPYH VLDTKARHQQ KHNKAVHLAQ bmy_01676T0/1-640 ---------- ---------- ---MSESS-- ---------- ---------- BACU014161/1-704 ------MQKE ITLPSRLVYY INQDSESPYH VLDTKARHQQ KHNKAVHLAQ 151 200 ENSTTRP00000001306/1-832 ASFQIEAFGS KFILDLTLNN GLLSSDYVEI HYENGKPQYS KGGEHCYYHG ENSP00000264377/1-832 ASFQIEAFGS KFILDLILNN GLLSSDYVEI HYENGKPQYS KGGEHCYYHG ENSBTAP00000026254/1-833 ASFQIEAFGS KFILDLTLNN GLLSSDYVEI HYENGKPQYS KGGEHCYYHG bmy_01676T0/1-640 ---------- ---------- ---------- ---------Q RGGEHCYYHG BACU014161/1-704 ASFQVEAFGS KFILDLTLNN GLLSSDYVEI HYENGKPQYS KGGEHCYYHG 201 250 ENSTTRP00000001306/1-832 NIRGIKDSRV ALSTCNGLHG MFEDNTSVYM IEPLELVHDE KSTGRPHIIE ENSP00000264377/1-832 SIRGVKDSKV ALSTCNGLHG MFEDDTFVYM IEPLELVHDE KSTGRPHIIQ ENSBTAP00000026254/1-833 NIRGVKDSRV ALSTCNGLHG MFEDHTFVYM IEPLDLVHNE KSTGRPHIIQ bmy_01676T0/1-640 NIRGIKDSRV ALSTCNGLHG MFEDNTSVYM IEPLELVHDE KSTGRPHIIE BACU014161/1-704 NIRGIKDSRV ALSTCNGLHG MFEDNTFVYM IEPLELVHDE KSTGRPHIIE 251 300 ENSTTRP00000001306/1-832 KTLAGQYSKQ MKNLSMESSD QWPFLSELQW LKRRRKRAVN PSRGVFEEMK ENSP00000264377/1-832 KTLAGQYSKQ MKNLTMERGD QWPFLSELQW LKRR-KRAVN PSRGIFEEMK ENSBTAP00000026254/1-833 KILAGKYSKQ MKNLSMESSD RWPFLSELQW LKRRQKRAVN PSRGVFEEMK bmy_01676T0/1-640 KTLAGQYSKQ MKNLSMESSD QWPFLSELQW LKRRRKRAVN ---------- BACU014161/1-704 KSLAGQYSKQ MKNLSMESSD QWPFLSELQW LKRRRKRAVN PSRGVFEEMK 301 350 ENSTTRP00000001306/1-832 YLELMIVNDH KTYKKCRSSH AHTNNFAKSV VNLVDSIYKE QLNTRVVLVA ENSP00000264377/1-832 YLELMIVNDH KTYKKHRSSH AHTNNFAKSV VNLVDSIYKE QLNTRVVLVA ENSBTAP00000026254/1-833 YLELMIVNDH KTYKKCRSSL AHANNFAKSV VNLVDSIYKE QLNTRVVLVA bmy_01676T0/1-640 ---------- --YKKCRSSH AHTNNFAKSV VNLVDSIYKE QLNTRVVLVA BACU014161/1-704 YLELMIVNDH KTYKKCRSSH AHTNNFAKSV VNLVDSIYKE QLNTRVVLVA 351 400 ENSTTRP00000001306/1-832 VETWTEKDHI DITTNPVQML HEFSKYRQRI RQHADAVHLI SRVTFHYKRS ENSP00000264377/1-832 VETWTEKDQI DITTNPVQML HEFSKYRQRI KQHADAVHLI SRVTFHYKRS ENSBTAP00000026254/1-833 VETWTERDHI DITTNLVQML HEFSKYRQRI RQHADAVHLI SRVTFHYKRS bmy_01676T0/1-640 VETWTEKDHI DITTNPVQML HEFSKYRQRI RQHADAVHLI ---------- BACU014161/1-704 VETWTEKDHI DITTNPVQML HEFSKYRQRI RQHADAVHLI SRVTFHYKRS 401 450 ENSTTRP00000001306/1-832 SLSYFGGVCS RT-GVGVNEY GLPMAVAQVL SQSLAQNLGI QWEPSSRKPK ENSP00000264377/1-832 SLSYFGGVCS RTRGVGVNEY GLPMAVAQVL SQSLAQNLGI QWEPSSRKPK ENSBTAP00000026254/1-833 SLSYFGGVCS RTRGVGVNEY GLPMAVAQVL SQSLAQNLGI QWEPSSRKPK bmy_01676T0/1-640 --SYY----- ---------- GLPMAVAQVL SQSLAQNLGI QWEPSSRKPR BACU014161/1-704 SLSYFGGVCS HTRGVGVNEY GLPMAVAQVL SQSLAQNLGI QWEPSSRKPK 451 500 ENSTTRP00000001306/1-832 CDCTESWGGC IMEETGVSHS RKFSKCSILE YRDFLHRGGG ACLFNRPTKL ENSP00000264377/1-832 CDCTESWGGC IMEETGVSHS RKFSKCSILE YRDFLQRGGG ACLFNRPTKL ENSBTAP00000026254/1-833 CDCTESWGGC IMEETGVSHS RKFSKCSILE YRDFLLRGGG ACLFNRPTKL bmy_01676T0/1-640 CDCTESWGGC IMEETGVSHS RKFSKCSILE YRDFLHRGGG ACLFNRPTKL BACU014161/1-704 CDCTESWGGC IMEETGVSHS RKFSKCSILE YRDFLHRGGG ACLFNRPTKL 501 550 ENSTTRP00000001306/1-832 FEPTECGNGY VEAGEECDCG IHVECYGLCC KKCSLSNGAH CSDGPCCNNT ENSP00000264377/1-832 FEPTECGNGY VEAGEECDCG FHVECYGLCC KKCSLSNGAH CSDGPCCNNT ENSBTAP00000026254/1-833 FEPTECGNGY VEAGEECDCG IHVECYGLCC KKCSLSNGAH CSDGPCCNNT bmy_01676T0/1-640 FEPTECGNGY VEAGEECDCG IHVECYGLCC KKCSLSNGAH CSDGPCCNNT BACU014161/1-704 FEPTECGNGY VEAGEECDCG IHVECYGLCC KKCSLSNGAH CSDGPCCNNT 551 600 ENSTTRP00000001306/1-832 SCLFQPRGYE CRDAVNGCDI TEYCTGDSGQ CPPNLHKQDG YACNQNQXXX ENSP00000264377/1-832 SCLFQPRGYE CRDAVNECDI TEYCTGDSGQ CPPNLHKQDG YACNQNQGRC ENSBTAP00000026254/1-833 SCLFQPRGYE CRDAVNGCDI TEYCTGDSGQ CPPNLHKQDG YACNQNQGRC bmy_01676T0/1-640 SCLFQPRGYE CRDAVNGCDI TEYCTGDSGQ CPPNLHKQDG YACNQNQGRC BACU014161/1-704 SCLFQPRGYE CRDAVNGCDI TEYCTGDSGQ CPPNLHKQDG YACNQNQGRC 601 650 ENSTTRP00000001306/1-832 XXXXXXXXXX XXXXXXXXXA SGSDKFCYEK LNTEGTEKGN CGKDGDRWIQ ENSP00000264377/1-832 YNGECKTRDN QCQYIWGTKA AGSDKFCYEK LNTEGTEKGN CGKDGDRWIQ ENSBTAP00000026254/1-833 YDGECKTRDN QCQYIWGTKA SGSDKFCYEK LNTEGTEKGN CGKDGDRWIQ bmy_01676T0/1-640 YNGECKTRDN QCQYIWGTK- ---------- ----GTEKGN CGKDGDRWIQ BACU014161/1-704 YNGECKTRDN QCQYIWGTKA SGSDKFCYEK LNTEGTEKGN CGKDGDRWIQ 651 700 ENSTTRP00000001306/1-832 CSKHDVFCGF LLCTNLTRAP RIGQLQGEII PTSFYHQGRV IDCSGAHVVL ENSP00000264377/1-832 CSKHDVFCGF LLCTNLTRAP RIGQLQGEII PTSFYHQGRV IDCSGAHVVL ENSBTAP00000026254/1-833 CSKHDVFCGF LLCTNLTRAP RIGQLQGEII PTSFYHQGRV IDCSGAHVVL bmy_01676T0/1-640 CSKHDVFCGF LLCTNLTRAP RIGQLQGEII PTSFYHQGRV IDCSGAHVVL BACU014161/1-704 CSKHDVFCGF LLCTNLTRAP RIGQLQGEII PTSFYHQGRV IDCSGAHVVL 701 750 ENSTTRP00000001306/1-832 DDDTDVGYVE DGTPCGPSMM CLDRKCLQIQ ALNMSSCPLD SKGKVCSGHG ENSP00000264377/1-832 DDDTDVGYVE DGTPCGPSMM CLDRKCLQIQ ALNMSSCPLD SKGKVCSGHG ENSBTAP00000026254/1-833 DDDTDVGYVE DGTPCGPSMM CLERKCLQIQ ALNMSSCPLD SKGKVCSGHG bmy_01676T0/1-640 DDDTDVGYVE DGTPCGPSMM CLDRKCLQIQ ALNMSSCPLG SKGKVCSGHG BACU014161/1-704 DDDTDVGYVE DGTPCGPSMM CLDRKCLQIQ ALNMSSCPLG SKGKVCSGHG 751 800 ENSTTRP00000001306/1-832 VCSNEATCIC DFTWAGTDCS IRDPVRSLHP PKDEGPKEMS RRGGSILLSK ENSP00000264377/1-832 VCSNEATCIC DFTWAGTDCS IRDPVRNLHP PKDEGPKGPS AT--NLIIGS ENSBTAP00000026254/1-833 VCSNEATCIC DFTWAGTDCS IRDPVRNLHP PKDEGPKGPS AT--NLIIGS bmy_01676T0/1-640 VCSNEATCIC DFTWAGTDCS IRDPVRSLHP PKDEGPKGRK NTYRNSVILI BACU014161/1-704 VCSNEATCIC DFTWAGTDCS IRDPVRSLHP PKDEGPKG-- ---------L 801 850 ENSTTRP00000001306/1-832 APSESAALDE RHLALLDSGC DILAAS---- ---------- LPELLSL--- ENSP00000264377/1-832 IA---GAILV AAIVLGGTGW GFKNVKKRRF ---------D PTQQGPI--- ENSBTAP00000026254/1-833 IA---GAILV AAIVLGGTGW GFKNVKKRRF ---------D PTQQGPI--- bmy_01676T0/1-640 CL----VLDE SAFKLSELQ- DFLKQKAALF HLCDSNEPKG AIILHPLILQ BACU014161/1-704 C--------- -DFSFNSLHT EFI------- ---------G TLPMAPI--- 851 900 ENSTTRP00000001306/1-832 ---------- ---------- ---------- ---------- --- ENSP00000264377/1-832 ---------- ---------- ---------- ---------- --- ENSBTAP00000026254/1-833 ---------- ---------- ---------- ---------- --- bmy_01676T0/1-640 RQEASKPSFR CVCVSCNLAH RAYIRINEYS ESNDFLRTQK KKK BACU014161/1-704 ---------- ---------- ---------- ---------- ---