KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:28:23 2014 Check: 00 .. Name: ENSTTRP00000015590/1-806 Len: 869 Check: 4387 Weight: 1.00 Name: ENSP00000338283/1-824 Len: 869 Check: 7844 Weight: 1.00 Name: bmy_11056T0/1-429 Len: 869 Check: 5103 Weight: 1.00 Name: ENSBTAP00000026257/1-794 Len: 869 Check: 6431 Weight: 1.00 Name: BACU017681/1-806 Len: 869 Check: 723 Weight: 1.00 // 1 50 ENSTTRP00000015590/1-806 MDEDEKDRAK RASRNKSEKK RRDQFNVLIK ELSSMLPGNT RKMDKTTVLE ENSP00000338283/1-824 MDEDEKDRAK RASRNKSEKK RRDQFNVLIK ELSSMLPGNT RKMDKTTVLE bmy_11056T0/1-429 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026257/1-794 ---------- RASRNKSEKK RRDQFNVLIK ELSSMLPGNT RKMDKTTVLE BACU017681/1-806 MDEDEKDRAK RASRNKSEKK RRDQFNVLIK ELSSMLPGNT RKMDKTTVLE 51 100 ENSTTRP00000015590/1-806 KVIGFLQKHN EVSTQTEICD IQQDWKPSFL SNEEFTQLML EALDGFIIAV ENSP00000338283/1-824 KVIGFLQKHN EVSAQTEICD IQQDWKPSFL SNEEFTQLML EALDGFIIAV bmy_11056T0/1-429 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026257/1-794 KVIGFLQKHN EVSAQTEICD IQPDWKPSFL SNEEFTQLML EALDGFIIAV BACU017681/1-806 KVIGFLQKHN EVSAQTEICD IQQXXXSSFL SNEEFTQLML EALDGFIIAV 101 150 ENSTTRP00000015590/1-806 TTDGSILYVS DSITPLLGHL PSDVTDQNLL RFLPEQEHSE VYKMLSSHML ENSP00000338283/1-824 TTDGSIIYVS DSITPLLGHL PSDVMDQNLL NFLPEQEHSE VYKILSSHML bmy_11056T0/1-429 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026257/1-794 TTDGSILYVS DSITPLLGHL PSDVMDQNLL NFLPEQEHSE VYKMLSSHML BACU017681/1-806 TTDGSILYVS DSITPLLGHL PSDVTDQNLL RFLPEQEHSE VYKMLSSHML 151 200 ENSTTRP00000015590/1-806 VTDSPSPEHL KSDNDLEFYC HLLRGSLNPK EFPTYEYIKF VGNFRSYNNA ENSP00000338283/1-824 VTDSPSPEYL KSDSDLEFYC HLLRGSLNPK EFPTYEYIKF VGNFRSYNNV bmy_11056T0/1-429 ---------- --------MC GL-------- ---------- ---------- ENSBTAP00000026257/1-794 VTDAPSPEYL KSDNDLEFYC HLLRGSLNPK EFPTYEYIKF VGNFRSYNNV BACU017681/1-806 VTDSPSPEHL KSDNDLEFYC HLLRGSLNPK EFPTYEYIKF VGNFRSYNNA 201 250 ENSTTRP00000015590/1-806 PSPSCNGFDS ALSRTCRMPL GKEVCFIATV RLATPQFLKE MCIVDKPLEE ENSP00000338283/1-824 PSPSCNGFDN TLSRPCRVPL GKEVCFIATV RLATPQFLKE MCIVDEPLEE bmy_11056T0/1-429 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026257/1-794 PSPSCNGFDG ALSRPCRVPL GKEVCFIATV RLATPQFLKE MCIVDEPLEE BACU017681/1-806 PSPSCNGFDS ALSRPCRMPL GKEVCFIATV RLATPQFLKE MCIVDKPLEE 251 300 ENSTTRP00000015590/1-806 FTSRHSLEWK FLFLDHRAPP IIGYLPFEVL GTSGYDYYHV DDLELLARCH ENSP00000338283/1-824 FTSRHSLEWK FLFLDHRAPP IIGYLPFEVL GTSGYDYYHI DDLELLARCH bmy_11056T0/1-429 ---------R LLF------- ---------- ---------- ---------- ENSBTAP00000026257/1-794 FTSRHSLEWK FLFLDHRAPP IIGYLPFEVL GTSGYDYYHV DDLELLARCH BACU017681/1-806 FTSRHSLEWK FLFLDHRAPP IIGYLPFEVL GTSGYDYYHV DDLELLAKCH 301 350 ENSTTRP00000015590/1-806 QHLMQFGKGK SCCYRFLTKG QQWIWLQTHY YITYHQWNSK PEFIVCTHSV ENSP00000338283/1-824 QHLMQFGKGK SCCYRFLTKG QQWIWLQTHY YITYHQWNSK PEFIVCTHSV bmy_11056T0/1-429 -TVMQFGKGK SCCYRFLTKG QQWIWLQTHY YITYHQWNSK PEFIVCTHSV ENSBTAP00000026257/1-794 QHLMQFGKGK SCCYRFLTKG QQWIWLQTHY YITYHQWNSK PEFIVCTHSV BACU017681/1-806 QHLMQFGKGK SCCYRFLTKG QQWIWLQTHY YITYHQWNSK PEFIVCTHSV 351 400 ENSTTRP00000015590/1-806 V--------- ----SYAEVR VERRQELALE DPLLETVHPS ALKHKGSSLE ENSP00000338283/1-824 V--------- ----SYADVR VERRQELALE DPPSEALHSS ALKDKGSSLE bmy_11056T0/1-429 VRSPLQLWSL DFLSSYAEVR VERRQELALE DPLLETVHPS ALKHKGSSLE ENSBTAP00000026257/1-794 V--------- ----SYAEVR VERRQELALE DPLLENVHPS ALKEKGSSLE BACU017681/1-806 V--------- ----SYAEVR VERRQELALE DPLLETVHPS ALKHKGSSLE 401 450 ENSTTRP00000015590/1-806 AQQHFNALDV GTSGLNTSHS PSASSRSSHK SSRTAVSEPT ------STPG ENSP00000338283/1-824 PRQHFNTLDV GASGLNTSHS PSASSRSSHK SSHTAMSEPT ------STPT bmy_11056T0/1-429 AQQHFNALDV GASGLNTSHS PSASSRSSHK SSRTAVSEPT CDVFLAATPS ENSBTAP00000026257/1-794 PQQHFNALDM GTSGLNTSHS PSASSRSSHK SSRTAMSEPT ------STPS BACU017681/1-806 AQQHFNALDV GASGLNTSHS PAASSRSSHK SSRTAVSEPT ------STPG 451 500 ENSTTRP00000015590/1-806 KLRAEAGTTA LPRSA---QE LPVLGLSQAA TMPAPLPAPA SCDVTQQLLP ENSP00000338283/1-824 KLMAEASTPA LPRSATLPQE LPVPGLSQAA TMPAPLPSPS SCDLTQQLLP bmy_11056T0/1-429 KLRAEAGTTA LPRSA---QE LPVLGLSQAA TMPAPLPTPA SCDITQQLLP ENSBTAP00000026257/1-794 KLRAEASTPA LPRSA---QE LPVPGLGQAA AMPAPLPAPA SCDLTQQLLP BACU017681/1-806 KLRAEAGSTA LPRSA---QE LPVLGLSLAA TMPAPLPAPA SCDITQQLLP 501 550 ENSTTRP00000015590/1-806 QAILQSPPAP VTQ------- ---------- --------XX XXXXXXXXXX ENSP00000338283/1-824 QTVLQSTPAP MAQ------- ---------- --------FS AQFSMFQTIK bmy_11056T0/1-429 QTILQSPPAP VTQVSLGLRA RETRGGTSXR QDAGVLWRFS AQLSMFQTIK ENSBTAP00000026257/1-794 QTILQSPPAP VSQ------- ---------- --------FS AQLSMFQTIK BACU017681/1-806 QTILQSPPAP VTQ------- ---------- --------FS AQLSMFQTIK 551 600 ENSTTRP00000015590/1-806 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXMFL QQPDVSLSFC ENSP00000338283/1-824 DQLEQRTRIL QANIRWQQEE LHKIQEQLCL VQDSNVQMFL QQPAVSLSFS bmy_11056T0/1-429 DQLEQRTRIL QANIRWQQEE LHKIQEQLCL VQDSNVQAIA E--------- ENSBTAP00000026257/1-794 DQLEQRTRIL QANIRWQQEE LHKIQEQLCL VQDSNVQMFL QQPDGSLSFS BACU017681/1-806 DQLEQRTRIL QANIRWQQEE LHKIQEQLCL VQDSNVQMFL QQPDVSLSFS 601 650 ENSTTRP00000015590/1-806 SAQRPGAQQQ LQQRSGPGPQ PQLVASPQLL GQVASAQVTS QHLLRDSSVI ENSP00000338283/1-824 STQRPEAQQQ LQQRSAAVTQ PQLGAGPQLP GQISSAQVTS QHLLRESSVI bmy_11056T0/1-429 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026257/1-794 SAQRPETQQQ LQQRSGPG-- PQLVASPQLP GQIASAQVTN QHLLRESSVV BACU017681/1-806 SAQRPETQQQ LQQRSGPGPQ PQLVASPQLL GQMASAHVTS QHLLRDSSVI 651 700 ENSTTRP00000015590/1-806 STQGPKPLRS PQMMQ----- GNSLTPQFSS TSAVLPPALS LTTPASASQE ENSP00000338283/1-824 STQGPKPMRS SQLMQSSGRS GSSLVSPFSS ATAALPPSLN LTTPASTSQD bmy_11056T0/1-429 ---------- ---------- ---------- ---------- ---PAHSAHD ENSBTAP00000026257/1-794 STQGPKPLRS SQMIQ----- GSSLTPQFSS TTTALPLALS LTTPASASQE BACU017681/1-806 STQGPKPLRS SQMMQ----- GNSLTPQFSS TSAVLPPALS LTTPASASQE 701 750 ENSTTRP00000015590/1-806 ASQGQPSPDF SHDRQLRLLL SQPIQPMMPG PCDARRPSEV GRPGRQV-RY ENSP00000338283/1-824 ASQCQPSPDF SHDRQLRLLL SQPIQPMMPG SCDARQPSEV SRTGRQV-KY bmy_11056T0/1-429 A--------- ---RVLR--- ---------- -------REA APRGRQAWTT ENSBTAP00000026257/1-794 APQGQPSPDF SHDRQLRLLL SQPIQPMMPG SCDARQPSEV GRTGRQV-KY BACU017681/1-806 ASQGQPSPDF SHDRQLRLLL SQPIQPMMPG SCDARQPPEV GRPGRQV-KY 751 800 ENSTTRP00000015590/1-806 PQSQAACPNP DVH-TTTSSA STPVLLMG-- -LHPHFPTSQ PSPLKPAQTQ ENSP00000338283/1-824 AQSQTVFQNP DAHPANSSSA PMPVLLMGQA VLHPSFPASQ PSPLQPAQAR bmy_11056T0/1-429 SQSQAVCPNP DVH-TTTSSV STPVLLMG-- -LHPRFPTSQ PSPLKPAQTQ ENSBTAP00000026257/1-794 PQSQAVFQNP DVH-TTSSSA ATPVLLMG-- -LQPSFPASQ PSPLKPAQAQ BACU017681/1-806 PQSQAVCPNP DVH-TTTSSA STPVLLTG-- -LHPRFPTSQ PSPLKPAQTQ 801 850 ENSTTRP00000015590/1-806 QQPP-CFLQV QAPTSLHSDQ QDSLRLSTYS QQPGTLGYPP PAPS-----R ENSP00000338283/1-824 QQPPQHYLQV QAPTSLHSEQ QDSLLLSTYS QQPGTLGYPQ PPPAQPQPLR bmy_11056T0/1-429 QQPP-CFLQV QAPTSLHSEP QDSLLLSTYS QQPGTLGYPP PAPS-----R ENSBTAP00000026257/1-794 PQPP-HFLQV QVPTSLHSEQ QDSLLLSTYS QQPGSLVYPT PGPA-----R BACU017681/1-806 QQPP-CFLQV QAPTSLHSEP QDSLLLSTYS QQPGTLGYPP PAPS-----R 851 900 ENSTTRP00000015590/1-806 PPRRLSSLSE SSGLQQLPR ENSP00000338283/1-824 PPRRVSSLSE SSGLQQPPR bmy_11056T0/1-429 PPRRVSSLSE SAGLQQLPR ENSBTAP00000026257/1-794 PARRVSSLSE SSGLQQPPR BACU017681/1-806 PPRRVSSLSE SSGLQQLPR