KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 5  Type: P  Thu May 15 17:28:24 2014  Check: 00 ..

 Name: BACU001560/1-135          Len:    187  Check:  9301  Weight:  1.00
 Name: bmy_20947T0/1-125         Len:    187  Check:  504  Weight:  1.00
 Name: ENSP00000386717/1-128     Len:    187  Check:  5208  Weight:  1.00
 Name: ENSTTRP00000015591/1-125  Len:    187  Check:  1706  Weight:  1.00
 Name: ENSBTAP00000026259/1-125  Len:    187  Check:  1706  Weight:  1.00

//


                          1                                                   50
BACU001560/1-135          MIHTSTQFVP FSPAPSSLNP YLYEPQLRTN TAKLPENQNK VEGRTRVLQL 
bmy_20947T0/1-125         ---------- MAPA------ ---------- ---------- ---------- 
ENSP00000386717/1-128     ---------- MAPA------ ---------- ---------- ---------- 
ENSTTRP00000015591/1-125  ---------- MAPA------ ---------- ---------- ---------- 
ENSBTAP00000026259/1-125  ---------- MAPA------ ---------- ---------- ---------- 


                          51                                                 100
BACU001560/1-135          KDKRTIARQD GSGKEARREE EGRSAIKEVV TREYTINIHK RIPGAPFKKR 
bmy_20947T0/1-125         ---------- ---KKGXEKK KGWSAINEVV TRENTVNIHK CIHAVGFKKR 
ENSP00000386717/1-128     ---------- ---KKGGEKK KGRSAINEVV TREYTINIHK RIHGVGFKKR 
ENSTTRP00000015591/1-125  ---------- ---KKGGEKK KGRSAINEVV TREYTINIHK RIHGVGFKKR 
ENSBTAP00000026259/1-125  ---------- ---KKGGEKK KGRSAINEVV TREYTINIHK RIHGVGFKKR 


                          101                                                150
BACU001560/1-135          ASRALKEIQK FAMKEMGTPD VRVDTGLNKA AAPKE----- ---------- 
bmy_20947T0/1-125         TPRALKEIWI FATKEMRIPD VCIDTRLNKS VWANGIRNVP YRIHVRLPRK 
ENSP00000386717/1-128     APRALKEIRK FAMKEMGTPD VRIDTRLNKA VWAKGIRNVP YRIRVRLSRK 
ENSTTRP00000015591/1-125  APRALKEIRK FAMKEMGTPD VRIDTRLNKA VWAKGIRNVP YRIRVRLSRK 
ENSBTAP00000026259/1-125  APRALKEIRK FAMKEMGTPD VRIDTRLNKA VWAKGIRNVP YRIRVRLSRK 


                          151                                                200
BACU001560/1-135          ---------- ---------- ---------- ------- 
bmy_20947T0/1-125         RNEDEDSTNK LYTLVTYLPL ATFK--NLQT VNVDEN- 
ENSP00000386717/1-128     RNEDEDSPNK LYTLVTYVPV TTFKISVLNS VTVAKSP 
ENSTTRP00000015591/1-125  RNEDEDSPNK LYTLVTYVPV TTFK--NLQT VNVDEN- 
ENSBTAP00000026259/1-125  RNEDEDSPNK LYTLVTYVPV TTFK--NLQT VNVDEN-