KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:28:25 2014 Check: 00 .. Name: ENSBTAP00000026272/1-852 Len: 905 Check: 6489 Weight: 1.00 Name: ENSP00000278742/1-855 Len: 905 Check: 6016 Weight: 1.00 Name: ENSTTRP00000009924/1-627 Len: 905 Check: 535 Weight: 1.00 Name: bmy_12500T0/1-813 Len: 905 Check: 9493 Weight: 1.00 Name: BACU010163/1-787 Len: 905 Check: 9805 Weight: 1.00 // 1 50 ENSBTAP00000026272/1-852 MKSERARRGA GGSGDLGAGF KYTSRPENMN GCEEGVEFLP ANNSSKVEKG ENSP00000278742/1-855 MGSDRARKGG GGPKDFGAGL KYNSRHEKVN GLEEGVEFLP VNNVKKVEKH ENSTTRP00000009924/1-627 ---------- ---------- ---------- ---------- ---------- bmy_12500T0/1-813 ---------- ---------- --------MN GFEEGVEFLP ANNTRKVEKG BACU010163/1-787 ---------- ---------- --------MN GFEEGVEFLP ANNTRKVEKG 51 100 ENSBTAP00000026272/1-852 GPRRWVVLMA VLAAFLALSL LAGLLAWHFQ DRNVRVQKIF NGYLSVRNEN ENSP00000278742/1-855 GPGRWVVLAA VLIGLLLVLL GIGFLVWHLQ YRDVRVQKVF NGYMRITNEN ENSTTRP00000009924/1-627 ---------- ---------- ---------- ---------- ---------- bmy_12500T0/1-813 GPRRWVVPVA VLAGLLVLSL TAGLLAWHFQ HRNVRVQKVF NGYLRITNEN BACU010163/1-787 GLRRWVVAVA VLAGLLVLSL VAGLLAWHFQ HRNVRVQKVF NGYLRVTNEN 101 150 ENSBTAP00000026272/1-852 FLDAYENSNS TEFANLAKKV KEALKFLYSG IPVLGPYHKT STVTAFRQGV ENSP00000278742/1-855 FVDAYENSNS TEFVSLASKV KDALKLLYSG VPFLGPYHKE SAVTAFSEGS ENSTTRP00000009924/1-627 ---------- ---------- ---------- ---------- -------EGS bmy_12500T0/1-813 FLDAYENSSS TEFANLAKKV KEALKLLYSG IPVLGPYYRK SAVTAFSEGS BACU010163/1-787 FLDAYENSSS TEFANLAKKV KEALKLLYSG IPVLGPYYRK SAVTAFSEGS 151 200 ENSBTAP00000026272/1-852 FIGHTDDQLQ KEKETQHESV QGFSSQRLLC GRARALGRMG FCSCSVWAHT ENSP00000278742/1-855 VIAYYWSEFS IPQHLVEEAE RVMAEERVVM LPPRARSLKS FVVTSVVAFP ENSTTRP00000009924/1-627 IIAYYWSEFS ISQYLVQEAE QAMAQEHVVT LPPRARAVSS FVLTSVVAFP bmy_12500T0/1-813 IIAYYWSEFS VPKHLVGEAE QAMAQEHVVT LPPRARAVSS FVLTSVVAFP BACU010163/1-787 VIAYYWSEFS VPKHLVGEAE QALAQEHVVT LPPRARAVSS FLLTSVVAFP 201 250 ENSBTAP00000026272/1-852 GSIVVVHRFS CSAARGIFPD QGSSPNLGSI PGLGRSLFLP GESHGQRSLV ENSP00000278742/1-855 TDSKTVQRTQ DNSCSFGLHA RGVELMRFTT PGFPDSPY-P AHARCQWALR ENSTTRP00000009924/1-627 TDPRTVQSTQ DNSCSFALHA RGSEPTRFTT PGFPDSPY-P SHARCQWTLR bmy_12500T0/1-813 TDPRTVQSTQ DNSCSFALHA RGSEPTRFTT PGFPDSPY-P SHARCQWTLR BACU010163/1-787 TDPRTVQSTQ DNSCSFALHA RGSEPTRFTT PGFPDSPY-P SHARCQWTLR 251 300 ENSBTAP00000026272/1-852 GYMMCILCL- FTSYNSDVLT PGG--LLTLE RLRSPLEPLC LLNNPGASLC ENSP00000278742/1-855 GDADSVLSLT FRSFDLASCD ERGSDLVTVY NTLSPMEPHA LVQ-----LC ENSTTRP00000009924/1-627 GDADSTLSLT FRSFDVATCD ESGSDLVTVY DTLSPVEPRA VVQ-----LC bmy_12500T0/1-813 GDADSTLSLT FRSFDVATCD ERDSDLVTVY DTLSPVEPRA MVQ-----LC BACU010163/1-787 GDADSTLSLT FRSFDVATCD KRDSDLVTVY DSLSPVEPRA VVQ-----LC 301 350 ENSBTAP00000026272/1-852 G---PVWLL- -LSATNCQLV SNKLFFQQQS SPIFVTCVSL PFFPGCGGY- ENSP00000278742/1-855 GTYPPSYNLT FHSSQNVLLI TLITNTERRH PGFEATFFQL PRMSSCGGRL ENSTTRP00000009924/1-627 GSYPPSYNLT FLSSQNVLLV TLVTNTERRH PGFEATVFQL PRMSSCGGDL bmy_12500T0/1-813 GTYPPSYNLT FLSSQNVLLV TLVTNTERRH PGFEAMFFQL PRMSSCGGYL BACU010163/1-787 GTYPPSYNLT FLSSQNVLLV TLVTNTERRH PGFEAMVFQL PRMSSCGGYL 351 400 ENSBTAP00000026272/1-852 RAAQGTFNSP YYPGHYPPNI NCTWHIEVPD NKNVKVRFKA FFLQEPNVPV ENSP00000278742/1-855 RKAQGTFNSP YYPGHYPPNI DCTWNIEVPN NQHVKVRFKF FYLLEPGVPA ENSTTRP00000009924/1-627 HAAQGTFSSP YYPAHYPPNI NCTWNIE--- ---------- ---------- bmy_12500T0/1-813 HAAQGTFSSP YYPGHYPPNI NCTWNIEVPD NQHVKVHFKA FFLLEPNVPL BACU010163/1-787 HAAQGTFSSP YYPGHYPPNI NCTWNIEVPN NQHVKVHFKA FFLLEPNVPL 401 450 ENSBTAP00000026272/1-852 GSCTKDYVEI NGEKYCGERP QFVASSRNNK ITVHFHSDQS YTDTGFLAEF ENSP00000278742/1-855 GTCPKDYVEI NGEKYCGERS QFVVTSNSNK ITVRFHSDQS YTDTGFLAEY ENSTTRP00000009924/1-627 ---------- ---------- ---------- ---------- ---------- bmy_12500T0/1-813 GSCSKDYVEI NGERYCGERP QFVVSSRSGK MTVRFHSDQS YTDTGFLAEY BACU010163/1-787 GSCSKDYVEI NGERYCGERP QFVVSSRSGK MTVRFHSDQS YTDTGFLAEY 451 500 ENSBTAP00000026272/1-852 LSFDARDPC- PGSFMCNTGR CIRKELRCDG WADCTDYSDE LDCKCNATYQ ENSP00000278742/1-855 LSYDSSDPC- PGQFTCRTGR CIRKELRCDG WADCTDHSDE LNCSCDAGHQ ENSTTRP00000009924/1-627 --------C- PGRFMCNTGR CIQEELRCDG WADCTDHSDE LHCQCNATYQ bmy_12500T0/1-813 LSYDASDPC- PGRFMCNTGR CIEKELRCDG WADCTDHSDE LHCQCNSTYQ BACU010163/1-787 LSYDASDRCP PETFRCNNGK CLPQSQRCDG KDNCGDGSDE AACDHVSTVT 501 550 ENSBTAP00000026272/1-852 FTCRDKFCKP LFWVCDSVKD CEDGSDEEGC SCPPNTFKCG NGKCLPQSQQ ENSP00000278742/1-855 FTCKNKFCKP LFWVCDSVND CGDNSDEQGC SCPAQTFRCS NGKCLSKSQQ ENSTTRP00000009924/1-627 FTCTDKLCKP LFWVCDSVKD CEDGSDEQGC SCPPETFRCN NGKCLPQSQQ bmy_12500T0/1-813 FTCADKLCKP LFWVCDSVKD CEDGSDEQGC SCPPETFRCN NGKCLPQSQR BACU010163/1-787 ---------- ---------- ---------- -C-------- ---------- 551 600 ENSBTAP00000026272/1-852 CDRKDDCGDG SDEAKCQDGK AVPCTEHTHR CL-----NGL CVDKSNPQCD ENSP00000278742/1-855 CNGKDDCGDG SDEASCPKVN VVTCTKHTYR CL-----NGL CLSKGNPECD ENSTTRP00000009924/1-627 CDGKDNCGDG SDEAKCHHVS TVTCTKHTYR CL-----DGL CVSKGNPECD bmy_12500T0/1-813 CDGKDNCGDG SDEAACDHGE ARPGPLPLGA CLPHSRAAGP EFNTHRPPC- BACU010163/1-787 ---------- ---------- ----TRHTYR CL-----DGL CVSKGNPECD 601 650 ENSBTAP00000026272/1-852 GNEDCTDGSD EKDCDCGRRS FTRQSRVVGG ENSDQGEWPW QVSLHAQGHG ENSP00000278742/1-855 GKEDCSDGSD EKDCDCGLRS FTRQARVVGG TDADEGEWPW QVSLHALGQG ENSTTRP00000009924/1-627 GKKDCIDGSD EKDCDCGLRS FSRQSRVVGG ENADEGEWPW QVSLHARGQG bmy_12500T0/1-813 ---------- --TLNCGLRS FTRQSRVVGG ENADEGEWPW QVSLHALGQG BACU010163/1-787 GKKDCIDGSD EKDCDCGLRS FTRQSRVVGG ENADEGEWPW QVSLHALGQG 651 700 ENSBTAP00000026272/1-852 HLCGASLISP SWMISAAHCF VDDRGFRYSE HSVWTAFLGL HDQSKRNAPG ENSP00000278742/1-855 HICGASLISP NWLVSAAHCY IDDRGFRYSD PTQWTAFLGL HDQSQRSAPG ENSTTRP00000009924/1-627 HVCGASLISP SWMVSAAHCF VNHRGFRYSD HSMWTAFLGL HDQSKRSAPG bmy_12500T0/1-813 HVCGASLISP SWMVSAAHCF IDYRGFRYSD HSMWTAFLGL QDQSKRSVPG BACU010163/1-787 HVCGASLISP SWMVSAAHCF IDHRGFRYSD HSMWTAFLGL HDQSKRSAPG 701 750 ENSBTAP00000026272/1-852 VQERGLQRII KHPFFNDFTF DYDIALLQLD RPVEYSATIR PICLPAADYT ENSP00000278742/1-855 VQERRLKRII SHPFFNDFTF DYDIALLELE KPAEYSSMVR PICLPDASHV ENSTTRP00000009924/1-627 VQERRLQRVI SHPFFNDFTF DYDIALLQLE QPAEYSATVR PICLPDAAHA bmy_12500T0/1-813 VQERRLQRII SHPFFNDFTF DYDIALLQLE QPAEYSATVR PICLPDAAHA BACU010163/1-787 VQERRLQRVV SHPFFNDFTF DYDIALLQLE QPAEYSATVR PICLPDAAHA 751 800 ENSBTAP00000026272/1-852 FPTGKAIWVT GWGHTQEAGQ GAMILQKGEI RVINQTTCEH LLPQQITPRM ENSP00000278742/1-855 FPAGKAIWVT GWGHTQYGGT GALILQKGEI RVINQTTCEN LLPQQITPRM ENSTTRP00000009924/1-627 FPAGKAIWVT GWGHTQEGGT RALILQKGEI RVINQTTCER LLPQQITARM bmy_12500T0/1-813 FPTGKAIWVT GWGHTQEGGM GALILQKGEI RVINQTTCER LLPQQVTARM BACU010163/1-787 FPTPKAIWVT GWGHTQEGGM GALILQKGEI RVINQTTCER LLPQXXXXXX 801 850 ENSBTAP00000026272/1-852 ICVGYLSGGV DAC------- ---------- ---------- -----QGDSG ENSP00000278742/1-855 MCVGFLSGGV DSC------- ---------- ---------- -----QGDSG ENSTTRP00000009924/1-627 MCVGYLSGGV DAC------- ---------- ---------- -----QGDSG bmy_12500T0/1-813 LCVGYLSGGV DAC------- ---------- ---------- -----QGDSG BACU010163/1-787 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXSPQGDSG 851 900 ENSBTAP00000026272/1-852 GPLSSPEEDG RMFQAGVVSW G-----EGCA QRNKPGVYTR LPVFRDWIKA ENSP00000278742/1-855 GPLSSVEADG RIFQAGVVSW G-----DGCA QRNKPGVYTR LPLFRDWIKE ENSTTRP00000009924/1-627 GPLSSPEANG RMFQAGVVSW G-----DGCA QRDKPGVYTR LSVFRDWIKQ bmy_12500T0/1-813 GPLSSPEANG RMFQAGVVSW GRRLRAEGQA RR----VHEA LRV------- BACU010163/1-787 GPLSSPEANG RMFQAGVVSW G-----DGCA QRDKPGVYTR VSMFRDWIKQ 901 950 ENSBTAP00000026272/1-852 QIGV- ENSP00000278742/1-855 NTGV- ENSTTRP00000009924/1-627 QTGV- bmy_12500T0/1-813 -SGLD BACU010163/1-787 QTGV-