KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:28:26 2014 Check: 00 .. Name: ENSP00000394624/1-493 Len: 590 Check: 6988 Weight: 1.00 Name: ENSBTAP00000026280/1-401 Len: 590 Check: 4882 Weight: 1.00 Name: ENSTTRP00000004570/1-457 Len: 590 Check: 4436 Weight: 1.00 Name: bmy_18509T0/1-416 Len: 590 Check: 5468 Weight: 1.00 Name: BACU011777/1-292 Len: 590 Check: 2285 Weight: 1.00 // 1 50 ENSP00000394624/1-493 MCLHRRVPSE ETYSLDRFAQ NPPLFPPPSL PASESRMAHA PLLQRCGAAR ENSBTAP00000026280/1-401 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004570/1-457 ---------- ---------- ---------- ---PSDALSP CLTLLSGSAR bmy_18509T0/1-416 ---------- ---------- ---------- ---------- ---------- BACU011777/1-292 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000394624/1-493 TGFCKKQQEL WQRRKEAAEA LGTRKVSVLL ATSHSGARPA VSTMDSSAAP ENSBTAP00000026280/1-401 ---------- ---------- ---------- ---------- ---MDSGAVP ENSTTRP00000004570/1-457 VGY--KKPEL WQRREEAAEA --RRPVRVLA VSQRGPSRPV VSTMDSSSVP bmy_18509T0/1-416 ---------- ---------- ---------- ---------- ---------- BACU011777/1-292 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000394624/1-493 TNASNCTDAL AYS-SCSPAP SPGSWVNLSH LDGNLSDPCG PNRTDLGGRD ENSBTAP00000026280/1-401 TNASNCTDPF THPSSCSPAP SPSSWVNFSH LEGNLSDPCG PNRTELGGSD ENSTTRP00000004570/1-457 KNASNCTDPF THSSSCSPGP NPSSWVNFSH LEGNLSDPCG PNRTELGGSD bmy_18509T0/1-416 -------MAL FFSGGATALP SS-------- ---------- ---------- BACU011777/1-292 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000394624/1-493 SLCPPTGSPS MITAITIMAL YSIVCVVGLF GNFLVMYVIV RYTKMKTATN ENSBTAP00000026280/1-401 RLCPSAGSPS MITAIIIMAL YSIVCVVGLF GNFLVMYVIV RYTKMKTATN ENSTTRP00000004570/1-457 SLCPSTGSPS MITAITIMAL YSIVCVVGLF GNFLVMYVIV RYTKMKTATN bmy_18509T0/1-416 ---------- ---------- ---------- ---------L RYTKMKTATN BACU011777/1-292 ---------- ---------- ---------- ---------- ----MKTATN 201 250 ENSP00000394624/1-493 IYIFNLALAD ALATSTLPFQ SVNYLMGTWP FGTILCKIVI SIDYYNMFTS ENSBTAP00000026280/1-401 IYIFNLALAD ALATSTLPFQ SVNYLMGTWP FGTILCKIVI SIDYYNMFTS ENSTTRP00000004570/1-457 IYIFNLALAD ALATSTLPFQ SVNYLMGTWP FGTILCKIVI SIDYYNMFTS bmy_18509T0/1-416 IYIFNLALAD ALATSTLPFQ SVNYLMGTWP FGTILCKIVI SIDYYNMFTS BACU011777/1-292 IYIFNLALAD ALATSTLPFQ SVNYLMGTWP FGTILCKIVI SIDYYNMFTS 251 300 ENSP00000394624/1-493 IFTLCTMSVD RYIAVCHPVK ALDFRTPRNA KIINVCNWIL SSAIGLPVMF ENSBTAP00000026280/1-401 IFTLCTMSVD RYIAVCHPVK ALDFRTPRNA KIINICNWIL SSAIGLPVMF ENSTTRP00000004570/1-457 IFTLCTMSID RYIAVCHPVK ALDFRTPRNA KIVNICNWIL SSAIGLPVMF bmy_18509T0/1-416 IFTLCTMSID RYIAVCHPVK ALDFRTPRNA KIVNICNWIL SSAIGLPVMF BACU011777/1-292 IFTLCTMSID RYIAVCHPVK ALDFRTPRNA KIVNICNWIL SSAIGLPVMF 301 350 ENSP00000394624/1-493 MATTKYRQGS IDCTLTFSHP TWYWENLLKI CVFIFAFIMP VLIITVCYGL ENSBTAP00000026280/1-401 MATTKYRQGS IDCTLTFSHP TWYWENLLKI CVFIFAFIMP ILIITVCYGL ENSTTRP00000004570/1-457 MATTKYRQGS IDCTLTFSHP TWYWENLLKI CVFIFAFIMP VLVITVCYGL bmy_18509T0/1-416 TATTKYRQGS IDCTLTFSHP TWYWENLLKI CVFIFAFILP VLIITVCYGL BACU011777/1-292 MATTKYRQGS IDCTLTFSHP TWYWENLLKI CVFIFAFIMP VLIITVCYGL 351 400 ENSP00000394624/1-493 MILRLKSVRM LSGSKEKDRN LRRITRMVLV VVAVFIVCWT PIHIYVIIKA ENSBTAP00000026280/1-401 MILRLKSVRM LSGSKEKDRN LRRITRMVLV VVAVFIVCWT PIHIYVIIKA ENSTTRP00000004570/1-457 MILRLKSVRM LSGSKEKDRN LRRITRMVLV VVAVFIVCWT PIHIYVIVKA bmy_18509T0/1-416 MILRLKSVRM LSGSKEKDRN LRRITRMVLV VVAVFIVCWT PIHIYVIIKA BACU011777/1-292 MILRLKSVRM LSGSKEKDRN LRRITRMVLV VVAVFIVCWT PIHIYVIIKA 401 450 ENSP00000394624/1-493 LVTIPETTFQ TVSWHFCIAL GYTNSCLNPV LYAFLDENFK RCFREFCIPT ENSBTAP00000026280/1-401 LITIPETTFQ TVSWHFCIAL GYTNSCLNPV LYAFLDENFK RCFREFCIPT ENSTTRP00000004570/1-457 LITIPETTFQ TVSWHFCIAL GYTNSCLNPV LYAFLDENFK RCFREFCIPT bmy_18509T0/1-416 LITIPETTFQ TVSWHFCIAL GYTNSCLNPV LYAFLDENFK RCFREFCIPT BACU011777/1-292 LITIPETTFQ TVSWHFCIAL GYTNSCLNPV LYAFLDENFK RCFREFCIPT 451 500 ENSP00000394624/1-493 SSNIEQQNST RIRQNTRDHP STANTVDRTN HQ-------- ---------- ENSBTAP00000026280/1-401 SSTIEQQNST RIRQNTRDHP STANTVDRTN HQ-------- ---------- ENSTTRP00000004570/1-457 SSTIEQQNST RIRQNTRDLP STANTVDRTN HQ-------- ---------- bmy_18509T0/1-416 SSTIEQQNST RMRQNTRDLP STANTVDRTN HQGPAYCSSC SDPYLIYVPL BACU011777/1-292 SSTIEQQNST RMRQNTRDLP STANTVDRTN HQ-------- ---------- 501 550 ENSP00000394624/1-493 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026280/1-401 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000004570/1-457 ---------- ---------- ---------- ---------- ---------- bmy_18509T0/1-416 VVFMSSRSLK FSGTNNLSNG YTTGCICAFL HGGAYSALRV PSSTGEQAAI BACU011777/1-292 ---------- ---------- -----VCSF- ---------- ---------- 551 600 ENSP00000394624/1-493 ---------- ---------- --------LE NLEAETAPLP ENSBTAP00000026280/1-401 ---------- ---------- --------LE NLEAETTPLP ENSTTRP00000004570/1-457 ---------- ---------- --------LQ NLEAETAPLP bmy_18509T0/1-416 TAPRGKLLRF FSLTTQPPSI NSTHVYQQLE NLEAETAPLP BACU011777/1-292 ---------- ---------- ---------- ----------