KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:28:27 2014 Check: 00 .. Name: ENSP00000261170/1-1073 Len: 1107 Check: 8481 Weight: 1.00 Name: ENSTTRP00000006971/1-1073 Len: 1107 Check: 9261 Weight: 1.00 Name: ENSBTAP00000026286/1-1072 Len: 1107 Check: 5469 Weight: 1.00 Name: bmy_01963T0/1-973 Len: 1107 Check: 4732 Weight: 1.00 Name: BACU016976/1-1028 Len: 1107 Check: 9106 Weight: 1.00 // 1 50 ENSP00000261170/1-1073 MKTLLLDLAL WSLLFQPGWL SFSSQVSQNC HNGSYEISVL MMGNSAFAEP ENSTTRP00000006971/1-1073 MKTPLLALAL WSLLLRPGLL FWTSQVSQNC HNGSYEITVL MVNNSAFPES ENSBTAP00000026286/1-1072 MKTPLLALAL WSLILRPGLP FWTSHVSRNC QDGSYEISVL MMNNSAFPES bmy_01963T0/1-973 MKTPLLALTL WSLLLRPGLL FWTSHVSQNC HNGSYEISVL MMNNSAFPES BACU016976/1-1028 MKTPLLALTL WSLLLRPGLL FWTSHVSQNC HNGSYEISVL MMNNSAFPES 51 100 ENSP00000261170/1-1073 LKNLEDAVNE GLEIVRGRLQ NAGLNVTVNA TFMYSDGLIH NSGDCRSSTC ENSTTRP00000006971/1-1073 QVNLKDVVNA GMEIVRQRLL EAGLNVTVNA SFINSDGMIY KSSDCRSSTC ENSBTAP00000026286/1-1072 LDSLEEVVKE GVKIVSQRLL EAGLNVTVNA TFIYSEGVIY KSSDCRSSTC bmy_01963T0/1-973 WVNLKEVVNV AVEIVRQRLL EAGLNVTVNA TFIHSEGMIY KSSDCRSSTC BACU016976/1-1028 WVNLRDVVNV AMEIVRQRLL EAGLNVTVNA TFIQSEGMIY KSSDCRSSTC 101 150 ENSP00000261170/1-1073 EGLDLLRKIS NAQRMGCVLI GPSCTYSTFQ MYLDTELSYP MISAGSFGLS ENSTTRP00000006971/1-1073 EGLDLLRTIS GTKRMGCVLM GPTCTYSTFQ MYLDTDLKYP MISAGSFGLS ENSBTAP00000026286/1-1072 EGLDLLRTIS SKKQMGCVLM GPSCTYSTFQ MYLDTDLNYP MISAGSFGLS bmy_01963T0/1-973 EGLDLLRTIS SKKQMGCVLM GPTCTYSTFQ MYLDTDLKYP MISAGSFGLS BACU016976/1-1028 EGLDLLRTIS RKKQMGCVLM GPTCTYSTFQ MYLDTDLKYP MISAGSFGLS 151 200 ENSP00000261170/1-1073 CDYKETLTRL MSPARKLMYF LVNFWKTNDL PFKTYSWSTS YVYKNGTETE ENSTTRP00000006971/1-1073 CDYKETLTRL MSPARKLTYF LVDFWKVNYL PFKTFSWNST YVFKNGTESE ENSBTAP00000026286/1-1072 CDYKETLTRM MSPARKLMYF LVEFWKVK-F QFKPFSWNTA YVFKNSTETE bmy_01963T0/1-973 CDYKETLTRL MTPARKLMYF FVDFWKVNYF PFKTFSWNTA YVFKNSTESE BACU016976/1-1028 CDYKETLTRL MTPARKLMYF LVDFWKVDYF PFKTFSWNTA YVFKNSTESE 201 250 ENSP00000261170/1-1073 DCFWYLNALE ASVSYFSHEL GFKVVLRQDK EFQDILMDHN RKSNVIIMCG ENSTTRP00000006971/1-1073 DCFWYLNALE AGVSYFSQNL NFKGTLRKDD EFQRILMGQN RQSNVIVMCG ENSBTAP00000026286/1-1072 DCFWYLNALE AGVSYFSQKL GFKEMLRGDT EFQDILMDQN RKSNVIVMCG bmy_01963T0/1-973 DCFWYLNALE AGVSYFSQKL KFKETLRGDN EFQRILMDQN RKSNVIIMCG BACU016976/1-1028 DCFWYLNALE AGVSYFSQKL TFKETLRGDN EFQRILMNQN RKSNVIVMCG 251 300 ENSP00000261170/1-1073 GPEFLYKLKG DRAVAEDIVI ILVDLFNDQY FEDNVTAPDY MKNVLVLTLS ENSTTRP00000006971/1-1073 TPDTINILKG DRAVAEDTVI ILVDLFNDHY FMDNVTAPDY MKNVLVLTLP ENSBTAP00000026286/1-1072 RPETIQNLRG NRAVAEDIVI ILVDLFNDHY FMDNVTAPDY MKNVLVLTLP bmy_01963T0/1-973 TPNTVNVLKG DRAVAKDTVI ILVDFFNDHY FMDNVTAPDY MKNVLVLTLP BACU016976/1-1028 TPNTINVLKG DRAVAEDTVI ILVDFFNDHY FMDNVTAPDY MKNVLVLTLP 301 350 ENSP00000261170/1-1073 PGNSLLNSSF SRNLSPTKRD FALAYLNGIL LFGHMLKIFL ENGENITTPK ENSTTRP00000006971/1-1073 PENPVSNSSF SKNLSLTXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000026286/1-1072 PENSVSNSSS SKNLSLAKND FAAAYLDGVL LFGHMLKIFL ENGEDVTTSK bmy_01963T0/1-973 PENSVSNSSF SKNLSLAKHD FAAAYFDGVL LFGHMLKIFL ANGEEVTTPK BACU016976/1-1028 PENSVSNSSF SKNLSLAKND FAAAYFDGVL LFGHMLKIFL ANGEEVTTPK 351 400 ENSP00000261170/1-1073 FAHAFRNLTF EGYDGPVTLD DWGDVDSTMV LLYTSVDTKK YKVLLTYDTH ENSTTRP00000006971/1-1073 XXXXXXXXXX XXRVGPVTLD DCGDIDNTML LLYTSVDTNK YKVLLTYDTR ENSBTAP00000026286/1-1072 FAHAFRNITF EGHVGPVTLD ACGDIDNTMY LLYTSVDTSK YKVLLTYDTR bmy_01963T0/1-973 FAHAFRNVTF EGHVGPVTLD DCGDIDNTMF LLYTSVDTNK YKVLLTYDTR BACU016976/1-1028 FAHAFRNVTF EGRVGPVTLD DCGDIDNTMF LLYTSVDTNK YKVLLTYDTR 401 450 ENSP00000261170/1-1073 VNKTYPVDMS PTFTWKNSKL PNDITGRGPQ ILMIAVFTLT GAVVLLLLVA ENSTTRP00000006971/1-1073 VNQTYPVDKR PTFIWKNHKL PKDKPDKGPQ MLLVAVFTLT GAVALLLLGA ENSBTAP00000026286/1-1072 VNQTSPVDKS PTFIWKNHKL PNDIPGQGPQ MLMIAVFTLA GTVVLLLLIA bmy_01963T0/1-973 INQTNPVDKS PTFIWKNHKL PNDIPGVGPQ ILMIAVFTLT GTVVLLLLIA BACU016976/1-1028 KNQTNPVDKS PTFIWKNHKL PNDVTGGDPP ILMIAVFTLT GTVVLLLFIA 451 500 ENSP00000261170/1-1073 LLMLRKYRKD YELRQKKWSH IPPENIFPLE TNETNHVSLK IDDDKRRDTI ENSTTRP00000006971/1-1073 LLVLRKYKRD YALRQKKWFH IPPENIFPLE SNETNHVSLK IDDDKRRDTI ENSBTAP00000026286/1-1072 LLVLRKYKRE HALRQKKWSH IPPEDIFPLE SNETNHVSLK IDDDKRRDTI bmy_01963T0/1-973 LLVLRKYKRE YALRQKKWSH IPPENILPLE SNETNHVSLK IDDDKRRDTI BACU016976/1-1028 LLVLRKYKRE YALRQKKWSH IPPENILPLE SNETNHVSLK IDDDKRRDTI 501 550 ENSP00000261170/1-1073 QRLRQCKYDK KRVILKDLKH NDGNFTEKQK IELNKLLQID YYNLTKFYGT ENSTTRP00000006971/1-1073 QRLRQCKYDK KRVILKDLKH NDGNFTEKQK IELNKLLQID YYNLTKFYGT ENSBTAP00000026286/1-1072 QRLRQCKYDK KRVILKDLKH NDGNFTEKQK IELNKLLQID YYNLTKFYGT bmy_01963T0/1-973 QRLRQCKYDK KQVILKDLKH NDGNFTEKQK IDLNKLLQID YYNLTKFYGT BACU016976/1-1028 QRLRQCKYDK KRVILKDLKH NDGNFTEKQK IDLNKLLQID YYNLTKFYGT 551 600 ENSP00000261170/1-1073 VKLDTMIFGV IEYCERGSLR EVLNDTISYP DGTFMDWEFK ISVLYDIAKG ENSTTRP00000006971/1-1073 VKLDSMIFGV IEYCERGSLR EVLNDTISYP DGTFMDWEFK ISVLYDIAKG ENSBTAP00000026286/1-1072 VKLDSTIFGV TEYCERGSLR EVLNDTISYP DGTFMDWEFK ISVLYDIAKG bmy_01963T0/1-973 VKLDSMIFGV IEYCERGSLR EVLNDTISYP DGTFMDWEFK ISVLYDIAKG BACU016976/1-1028 VKLDSMIFGV IEYCERGSLR EVLNDTISYP DGTFMDWEFK ISVLYDIAKG 601 650 ENSP00000261170/1-1073 MSYLHSSKTE VHGRLKSTNC VVDSRMVVKI TDFGCNSILP PKKDLWTAPE ENSTTRP00000006971/1-1073 MSYLHSSKTE VHGRLKSTNC VVDSRMVVKI TDFGCNSILP PRKDLWTAPE ENSBTAP00000026286/1-1072 MSYLHSSKTE VHGRLKSTNC VVDSRMVVKI TDFGCNSILP PRKDLWTAPE bmy_01963T0/1-973 MSYLHSSKTE VHGRLKSTNC VVDSRMVVKI TDFGCNSILP PRKDLWTAPE BACU016976/1-1028 MSYLHSSKTE VHGRLKSTNC VVDSRMVVKI TDFGCNSILP PRKDLWTAPE 651 700 ENSP00000261170/1-1073 HLRQANISQK GDVYSYGIIA QEIILRKETF YTLSCRDRNE KIFRVENSNG ENSTTRP00000006971/1-1073 HLRQASISQK GDVYSYGIIA QEIILRRETF YTLSCRDQKE KIFRVEYSNG ENSBTAP00000026286/1-1072 HLRVASVSQK GDVYSYGIIA QEIIQRRETF YTLSCRDQKE KIFRVENCNG bmy_01963T0/1-973 HLRQANISQK GDVYSYGIIA QEIILRRETF YTFSCRDQKD LLLRADE--- BACU016976/1-1028 HLRQANISQK GDVYSYGIIA QEIILRRETF YTFSCRDQKD VLLRADE--- 701 750 ENSP00000261170/1-1073 MKPFRPDLFL ETAEEKELEV YLLVKNCWEE DPEKRPDFKK IETTLAKIFG ENSTTRP00000006971/1-1073 VKPFRPDLFL ETAEEKELEV YLLVKNCWEE DPEKRPDFKK IENTLAKIFG ENSBTAP00000026286/1-1072 VKPFRPDLFL ETAEEKELEV YLLVKSCWEE DPEKRPDFKK IENTLAKIFG bmy_01963T0/1-973 ---------- ---------- --ITSSSITT ---------- --------YS BACU016976/1-1028 ---------- ---------- --IV--CVTD ---------- --------EI 751 800 ENSP00000261170/1-1073 LFHDQKNESY MDTLIRRLQL YSRNLEHLVE ERTQLYKAER DRADRLNFML ENSTTRP00000006971/1-1073 LFHDQKNETY MDTLIRRLQL YSRNLEHLVE ERTQLYKAER DRADRLNFML ENSBTAP00000026286/1-1072 LFHDQKNESY MDTLIRRLQL YSRNLEHLVE ERTQLYKAER DRADQLNFML bmy_01963T0/1-973 LFHDQKNETY MDTLIRRLQL YSRNLEHLVE ERTQLYKAER DRADRLNFML BACU016976/1-1028 LFHDQKNETY MDTLIRRLQL YSRNLEHLVE ERTQLYKAER DRADRLNFML 801 850 ENSP00000261170/1-1073 LPRLVVKSLK EKGFVEPELY EEVTIYFSDI VGFTTICKYS TPMEVVDMLN ENSTTRP00000006971/1-1073 LPRLVVKSLK EKGIVEPELY EEVTIYFSDI VGFTTICKYS TPMEVVDMLN ENSBTAP00000026286/1-1072 LPRLVVKSLK EKGFVEPELY EEVTVYFSDI VGFTTICKYS TPMEVVDMLN bmy_01963T0/1-973 LPRLVVKSLK EKGIVEPELY EEVTIYFSDI VGFTTICKYS TPMEVVDMLN BACU016976/1-1028 LPRLVVKSLK EKGIVEPELY EEVTIYFSDI VGFTTICKYS TPMEVVDMLN 851 900 ENSP00000261170/1-1073 DIYKSFDHIV DHHDVYKVET IGDAYMVASG LPKRNGNRHA IDIAKMALEI ENSTTRP00000006971/1-1073 DIYKNFDHIL DHHDVYKVET IGDAYMVASG LPKRNGNRHA IDIAKMALDI ENSBTAP00000026286/1-1072 DIYKNFDHIL DHHDVYKVET IGDAYMVASG LPKRNGNRHA IDIAKMALDL bmy_01963T0/1-973 DIYKNFDHIL DHHDVY---- ---------- --KKRPAPHP PDSVTSVAST BACU016976/1-1028 DIYKNFDHIL DHHDVYKVET IGDAYMVASG LPKRNGNRHA IDIAKMALDI 901 950 ENSP00000261170/1-1073 LSFMGTFELE HLPGLPIWIR IGVHSGPCAA GVVGIKMPRY CLFGDTVNTA ENSTTRP00000006971/1-1073 LSFMGTFELE HLPGLPIWIR IGIHSGPCAA GVVGIKMPRY CLFGDTVNTA ENSBTAP00000026286/1-1072 LSFVGTFELE HLPGLPIWIR IGIHSGPCAA GVVGIKMPRY CLFGDTVNTA bmy_01963T0/1-973 CCFLSL---- ---------- ----SGPCAA GVVGIKMPRY CLFGDTVNTA BACU016976/1-1028 LSFMGTFELE HLPGLPIWIR IGIHSGPCAA GVVGIKMPRY CLFGDTVNTA 951 1000 ENSP00000261170/1-1073 SRMESTGLPL RIHVSGSTIA ILKRTECQFL YEVRGETYLK ---------- ENSTTRP00000006971/1-1073 SRMESTGLPL RIHVSGSTIS ILKRTECQFL YEVRGETYLK ---------- ENSBTAP00000026286/1-1072 SRMESTGLPL RIHVSGSTIA ILKRTECQFL YEVRGETYLK ---------- bmy_01963T0/1-973 SRMESTGLPL RIHVSGSTIS ILKRTECQFL YEVRGETYLK VRNPQRQHPE BACU016976/1-1028 SRMESTGLPL RIHVSGSTIS ILKRTECQFR YEVRGETYLK ---------- 1001 1050 ENSP00000261170/1-1073 ---------- ---------- ----GRGNET TYWLTGMKDQ KFNLPTPPTV ENSTTRP00000006971/1-1073 ---------- ---------- ----GRGTET TYWLTGGKDQ EYNLPTPPTA ENSBTAP00000026286/1-1072 ---------- ---------- ----GRGTET TYWLTGVKDQ EYNLPTPPTA bmy_01963T0/1-973 KSSHQHLGDA SFESGHPMFS ILMSGRGTET TYWLTGGKHQ EYNLPTPPTA BACU016976/1-1028 ---------- ---------- ----GRGTET TYWLTGGKDQ EYNLPTPPTA 1051 1100 ENSP00000261170/1-1073 ENQQRLQAEF SDMIANSLQK RQAAGIRSQK PRRVASYKKG TLEYLQLNTT ENSTTRP00000006971/1-1073 ESQQRLQAEF VDMIASSLQK RQASGIRNRK PTRVASYKKG TLEYLQLNTT ENSBTAP00000026286/1-1072 ENQQRLQAEF ADMIASSLQK RQALGIRNRK PTRVASYKKG TLEYLQLNTT bmy_01963T0/1-973 ---------- ---------- ---------- ---------- ---------- BACU016976/1-1028 ENQQRLQAEF VDMIASSLQK RQASGIRNRK PTRIASYKKG TLEYLQLNTT 1101 1150 ENSP00000261170/1-1073 DKESTYF ENSTTRP00000006971/1-1073 DKESTHF ENSBTAP00000026286/1-1072 DNESTHF bmy_01963T0/1-973 ------- BACU016976/1-1028 DKEGTHF