KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:28:32 2014 Check: 00 .. Name: ENSP00000320084/1-534 Len: 552 Check: 8036 Weight: 1.00 Name: ENSBTAP00000026300/1-528 Len: 552 Check: 2249 Weight: 1.00 Name: bmy_11985T0/1-317 Len: 552 Check: 4766 Weight: 1.00 Name: BACU017929/1-548 Len: 552 Check: 6484 Weight: 1.00 Name: ENSTTRP00000014868/1-314 Len: 552 Check: 4928 Weight: 1.00 // 1 50 ENSP00000320084/1-534 MLRRRGSPGM GVHVGAALGA LWFCLTG-AL EVQVPEDPVV ALVGTDATLC ENSBTAP00000026300/1-528 --CGPSSTGV --SVAPALGV LWFCLTGAAV EVQVPEDPVV ALVGTDATLR bmy_11985T0/1-317 MLCGPGSTGM --RVATALGV LWFCLAG--- ---------- ---------- BACU017929/1-548 MLCGPGSTGM --RVATALGV LWLCLAGAAV EVRIPEDPVV ALLGTDATLR ENSTTRP00000014868/1-314 MLCGPGSTGM --RVATALGV LWFCLAG--- ---------- ---------- 51 100 ENSP00000320084/1-534 CSFSPEPGFS LAQLNLIWQL TDTKQLVHSF AEGQDQGSAY ANRTALFPDL ENSBTAP00000026300/1-528 CSFSTEPGFS LAQLNLIWQL TDTKQLVHSF AEGRDQGSAY ANRTALFPDL bmy_11985T0/1-317 ---------- ---------- ---------- ---------- ---------- BACU017929/1-548 CSFSPEPGFS LAQLNLIWQL TDTKQLVHSF AEGRDQGSAY ANRTALFPDL ENSTTRP00000014868/1-314 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000320084/1-534 LAQGNASLRL QRVRVADEGS FTCFVSIRDF --GSAAVSLQ VAAPYSKPSM ENSBTAP00000026300/1-528 LAQGNASLRL QRVRVADEGS FTCFVRIQDF --GSATVSLQ VAARYSKPSM bmy_11985T0/1-317 ---------- ---------- ---------- ---------- ---------- BACU017929/1-548 LAQGNASLRL QRVRVADEGS FTCSVNIRDF GSGSAAVSLQ VAAPYSKPSM ENSTTRP00000014868/1-314 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000320084/1-534 TLEPNKDLRP GDTVTITCSS YQGYPEAEVF WQDGQGVPLT GNVTTSQMAN ENSBTAP00000026300/1-528 TLEPNKDLRP GDTVTITCSS YRGYPKAEVL WQDGQGAPLT GNVTTSQMAN bmy_11985T0/1-317 ---------- ---------- ---------- ---------- ---------- BACU017929/1-548 TLEPNKDLRP GDTVTITCSS YRGYPEAEVF WQDGQGAPLT GNVTTSQMAN ENSTTRP00000014868/1-314 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000320084/1-534 EQGLFDVHSI LRVVLGANGT YSCLVRNPVL QQDAHSSVTI TPQRSPTGAV ENSBTAP00000026300/1-528 EQGLFDVHSV LRVVLGANGT YSCLVRNPVL QQDAHGSVTI TPHRSPTGAV bmy_11985T0/1-317 ---------- ---------- ---------- ---------- -------AAV BACU017929/1-548 EQGLFDVRSV LRVVLGANGT YSCLVRNPVL QQDAHGSVTI TPHRSPTGAV ENSTTRP00000014868/1-314 ---------- ---------- ---------- ---------- --------AV 251 300 ENSP00000320084/1-534 EVQVPEDPVV ALVGTDATLR CSFSPEPGFS LAQLNLIWQL TDTKQLVHSF ENSBTAP00000026300/1-528 EVQVPEDPVV ALVGTDATLR CSFSTEPGFS LAQLNLIWQL TDTKQLVHSF bmy_11985T0/1-317 EVRIPEDPVV VLVGTDATLR CSFSPEPGFS LAQLNLIWQL TDTKQLVHSF BACU017929/1-548 EVQVPEDPVV ALVGTDATLH CSFSPEPGFS LAQLNLIWQL TDTKQLVHSF ENSTTRP00000014868/1-314 EVQVPEDPVV ALVGTDATLR CSFLPEPGFS LAQLNLIWQL TDTKQLVHSF 301 350 ENSP00000320084/1-534 TEGRDQGSAY ANRTALFPDL LAQGNASLRL QRVRVADEGS FTCFVSIRDF ENSBTAP00000026300/1-528 AEGRDQGSAY ANRTALFPDL LAQGNASLRL QRVRVADEGS FTCFVSIRDF bmy_11985T0/1-317 AEGRDQGSAY ANRTALFPDL LAQGNASLRL QRVRVADEGS FTCFLNIRDF BACU017929/1-548 AEGRDQGSAY ANRTALFPDL LAQGNASLRL QRVRVADEGS FTCFVSIRDF ENSTTRP00000014868/1-314 AEGRDQGSAY ANRTALFPDL LAQGNASLRL QRVRVADEGS FTCFVSIRDF 351 400 ENSP00000320084/1-534 --GSAAVSLQ VAAPYSKPSM TLEPNKDLRP GDTVTITCSS YRGYPEAEVF ENSBTAP00000026300/1-528 --GSAAVSLQ VAAPYSKPSM TLEPNKDLRP GDTVTITCSS YRGYPEAEVL bmy_11985T0/1-317 GSGSAAVSLQ VAAPYSKPSX TLEPNKDLRP GDTVTITCSS YRGYPEAEVF BACU017929/1-548 --GSAAVSLQ VAAPYSKPSM TLEPNKDLRP GDTVTITCSS YRGYPEAEVF ENSTTRP00000014868/1-314 --GSAAVSLQ VAAPYSKPSM TLEPNKDLRP GDTVTITCSS YRGYPEAEVF 401 450 ENSP00000320084/1-534 WQDGQGVPLT GNVTTSQMAN EQGLFDVHSV LRVVLGANGT YSCLVRNPVL ENSBTAP00000026300/1-528 WQDGQGAPLT GNVTTSQMAN EQGLFDVHSV LRVVLGANGT YSCLVRNPVL bmy_11985T0/1-317 WQDGQGAPLT XNVTTSQXAX EQGLFDVRSV LRVVLGANGT YSCLVRNPVL BACU017929/1-548 WQDGQGAPLT GNVTTSQMAN EQGLFDVRSV LRVVLGANGT YSCLVRNPVL ENSTTRP00000014868/1-314 WQDGQGAPLT GNVTTSQMAN EQGLFDVRSV LRVVLGANGT YSCLVRNPVL 451 500 ENSP00000320084/1-534 QQDAHGSVTI TGQPMTFPPE ALWVTVGLSV CLIALLVALA FVCWRKIKQS ENSBTAP00000026300/1-528 QQDAHGSVTI TGQPMTFPPE ALWVTVGLSI CLVALLVALA FVCWRKIKQS bmy_11985T0/1-317 QQDAHGSVTI TGQPMTFPPE ALWVTVGLSV CLVALLVALA FVCWRKIKQS BACU017929/1-548 QQDAHGSVTI TGQPMTFPPE ALWVTVGLSV CLVALLVALA FVCWRKIKQS ENSTTRP00000014868/1-314 QQDAHGSVTI TGQPMTFPPE ALWVTVGLSV CLVALLVALA FVCWRKIKQS 501 550 ENSP00000320084/1-534 CEEENAGAED QDGEGEGSKT ALQPLKHSDS KEDDGQEIA- ---------- ENSBTAP00000026300/1-528 CEEENAGAED HDGDGEGSKT ALRPLKHSEN KEDDGP---- ---------- bmy_11985T0/1-317 CEEENAGAED QDGDGEGSKT ALRPLKHSES KEDDGPEIA- ---------- BACU017929/1-548 CEEENAGAED QDGDGEGSKT ALRPLKHSES KEEEQPRFPP VEMAEKPRSP ENSTTRP00000014868/1-314 CEEENAGAED QDGDGEGSKT ALRPLKHSES KEDDGPEIA- ---------- 551 600 ENSP00000320084/1-534 -- ENSBTAP00000026300/1-528 -- bmy_11985T0/1-317 -- BACU017929/1-548 LL ENSTTRP00000014868/1-314 --