KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:28:34 2014 Check: 00 .. Name: ENSTTRP00000013490/1-566 Len: 604 Check: 7004 Weight: 1.00 Name: ENSP00000162391/1-574 Len: 604 Check: 9573 Weight: 1.00 Name: ENSBTAP00000026309/1-560 Len: 604 Check: 407 Weight: 1.00 Name: bmy_05549T0/1-287 Len: 604 Check: 4396 Weight: 1.00 Name: BACU017027/1-547 Len: 604 Check: 8934 Weight: 1.00 // 1 50 ENSTTRP00000013490/1-566 ---------- ---------- --------MA SDLESSLTSI DWLPQLTLRA ENSP00000162391/1-574 ---------- ---------- --------MA SDLESSLTSI DWLPQLTLRA ENSBTAP00000026309/1-560 ---------- ---------- --------MA SDLESSLTSI DWLPQLTLRA bmy_05549T0/1-287 ---------- ---------- --------MA SDLESSLTSI DWLPQLTLRA BACU017027/1-547 MDPQQGSEEE ILAGIWPAVQ ARAEPRSTMA SDLESSLTSI DWLPQLTLRA 51 100 ENSTTRP00000013490/1-566 TIEKLGSASQ AGPPGSSRKC PPGSPTDPNA TLSKDEAAVH QDGKPRYSYA ENSP00000162391/1-574 TIEKLGSASQ AGPPGSSRKC SPGSPTDPNA TLSKDEAAVH QDGKPRYSYA ENSBTAP00000026309/1-560 TIEKLGSASQ AGPPGGSRKC PPGSPTDPNA TLSKDEAAVH QDGKPRYSYA bmy_05549T0/1-287 TIEKLGSASQ AGPPGGSRKC PPGSPTDPNA TLSKDEAAVH QDGKPRYSYA BACU017027/1-547 TIEKLGSASQ AGPPGGSRKC PPGSPTDPNA TLSKDEAAVH QDGKPRYSYA 101 150 ENSTTRP00000013490/1-566 TLITYAINSS PAKKMTLSEI YRWICDNFPY YKNAGIGWKN SIRHNLSLNK ENSP00000162391/1-574 TLITYAINSS PAKKMTLSEI YRWICDNFPY YKNAGIGWKN SIRHNLSLNK ENSBTAP00000026309/1-560 TLITYAINSS PAKKMTLSEI YRWICDNFPY YKNAGIGWKN SIRHNLSLNK bmy_05549T0/1-287 TLITYAINSS PAKKMTLSEI YRWICDNFPY YKNAGIGWKN SIRHNLSLNK BACU017027/1-547 TLITYAINSS PAKKMTLSEI YRWICDNFPY YKNAGIGWKN SIRHNLSLNK 151 200 ENSTTRP00000013490/1-566 CFRKVPRPRD DPGKGSYWTI DTCPDISRKR RHPPDDDLSQ DSPEQEASKS ENSP00000162391/1-574 CFRKVPRPRD DPGKGSYWTI DTCPDISRKR RHPPDDDLSQ DSPEQEASKS ENSBTAP00000026309/1-560 CFRKVPRPRD DPGKGSYWTI DTCPDISRKR RHPPDDDLSQ DSPEQDASKS bmy_05549T0/1-287 CFRKVPRPRD DPGKGSYWTI DTCPDISRKR RHPPDDDLSQ DSPEQEASKS BACU017027/1-547 CFRKVPRPRD DPGKGSYWTI DTCPDISRKR RHPPDDDLSQ DSPEQEASKS 201 250 ENSTTRP00000013490/1-566 PRGGVPGSGE ASLPPEGNPQ MPLQSPTSIA SYSQGTGSVD GGAVAAGAPG ENSP00000162391/1-574 PRGGVAGSGE ASLPPEGNPQ MSLQSPTSIA SYSQGTGSVD GGAVAAGASG ENSBTAP00000026309/1-560 PRGGVPGSGE ASLPPEGNPQ IPLQSPTSIA SYSQGTGSVD GGAVAAAGPG bmy_05549T0/1-287 PRGGVPGSGE ASLPPEGNPQ MPLQSPTSIA SYSQGTGSVD GGAVAAGAPG BACU017027/1-547 PRGGVPGSGE ASLPPEGNPQ MPLQSPTSIA SYSQGTGSVD GGAVAAGAPG 251 300 ENSTTRP00000013490/1-566 RESTEGPPPL YNTXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000162391/1-574 RESAEGPPPL YNTNHDFKFS YSEINFQDLS WSFRNLYKSM LEKSSSSSQH ENSBTAP00000026309/1-560 RESTEGPPPL YNTNHDFKFS YSEINFQDLS WSFRNLYKSM LEK-SSSSQH bmy_05549T0/1-287 RESTEGPPPL YNTTHDFKFS YSEINFQDLS WSFRNLYKSM LEKSSSSSQH BACU017027/1-547 RESTEGPPPL YNTTHDFKFS YSEINFQDLS WSFRNLYKSM LEKSSSSSQH 301 350 ENSTTRP00000013490/1-566 XFSSLLGDLP PSNNYYMYQQ PPPPPPP--- ----PPPPPQ PQPQPQPQQA ENSP00000162391/1-574 GFSSLLGDIP PSNNYYMYQQ QQPPPPQQQQ QQQQPPQPPP QQSQPQQQQA ENSBTAP00000026309/1-560 GFSSLLGDLP PSNNYYVYQQ QQQPP----- ----QPQPPP PQSQP---QA bmy_05549T0/1-287 G--------- ---------- ---------- ---------- ---------- BACU017027/1-547 GLH------- ---------- ---------- ---------P RSLKNSMKRC 351 400 ENSTTRP00000013490/1-566 PAQGPSNVGG APPLHTPSPD GCAPPGGKQA GAEGYGPPPV MAMHPPPLQH ENSP00000162391/1-574 PAQGPSAVGG APPLHTPSTD GCTPPGGKQA GAEGYGPPPV MAMHPPPLQH ENSBTAP00000026309/1-560 PAQGTSAVGG APPLHTPSPD GCTPPGGKPT GSEGYGPPPV MAMHPPPLQH bmy_05549T0/1-287 ---------- ---------- ---------- ---------- ---------- BACU017027/1-547 MLTFWLKFQR LSVLSRASVC RLTLPGGG-- ---------- ---------H 401 450 ENSTTRP00000013490/1-566 SGYHPHQHHP PTHPAQPPPP P---PQAQGQ APINSTGFAF PPDWCSNIDS ENSP00000162391/1-574 GGYHPHQHHP HSHPAQQPPP P--QPQAQGQ APINNTGFAF PSDWCSNIDS ENSBTAP00000026309/1-560 GGYHAHQHHP HSHPAQQPPP Q---QQAQGQ APINSTGFAF PPDWCSNIDS bmy_05549T0/1-287 ---------- ---------- ----ESGVGR GAETSLGF-- ---------- BACU017027/1-547 GGYHPHQHHP PTHPAQPPPP PPQQQQAQGQ AAINSTGFAF PPDWCSNIDS 451 500 ENSTTRP00000013490/1-566 LKESFKMVNR LNWSSIEQSQ FSELMESLRQ AEQKNWSLDQ HHIANLCDSL ENSP00000162391/1-574 LKESFKMVNR LNWSSIEQSQ FSELMESLRQ AEQKNWTLDQ HHIANLCDSL ENSBTAP00000026309/1-560 LKESFKMVNR LNWSSIEQSQ FSELMESLRQ AEQKNWSLDQ HHIANLCDSL bmy_05549T0/1-287 ---------- ---------- ---------- ---------- ---------- BACU017027/1-547 LKESFKMVNR LNWSSIEQSQ FSELMESLRQ AEQKNWSLDQ HHIANLCDSL 501 550 ENSTTRP00000013490/1-566 NHFLTQTGHV PPQGGSHRPP APARIADSCA LTSGKQEPAM NQVNSYVHPQ ENSP00000162391/1-574 NHFLTQTGHV PPQGGTHRPP APARIADSCA LTSGKQESAM SQVNSYGHPQ ENSBTAP00000026309/1-560 NHFLTQTGHV PPQGGSHRPP APSRIADSCA LTSGKQEPAM NQVNSYVHPQ bmy_05549T0/1-287 ---------- ---------- ---------- ---------- ---------- BACU017027/1-547 NHFLTQTGHV PPQGGSHRPP APARIADSCA LTSGKQEPAM NQVNSYVHPQ 551 600 ENSTTRP00000013490/1-566 APHLYPGPSP MYPLATQDSA GYNRPAHHMV PRPPVPPPGA NEEIPDDFDW ENSP00000162391/1-574 APHLYPGPSP MYPIPTQDSA GYNRPAHHMV PRPSVPPPGA NEEIPDDFDW ENSBTAP00000026309/1-560 APHLYPGPSP MYPLPTQDSA GYSRPAHHMV PRPPVPPPGA SEEIPDDFDW bmy_05549T0/1-287 ---------- ---------- ---------- ---------- ---------- BACU017027/1-547 APHLYPGPSP MYPLATQDSA GYNRPAHHMV PRPPVPPPGA SEEIPDDFDW 601 650 ENSTTRP00000013490/1-566 DLIT ENSP00000162391/1-574 DLIT ENSBTAP00000026309/1-560 DLIT bmy_05549T0/1-287 ---- BACU017027/1-547 DLIT