KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:28:34 2014 Check: 00 .. Name: ENSP00000262315/1-975 Len: 1171 Check: 3093 Weight: 1.00 Name: ENSBTAP00000026311/1-978 Len: 1171 Check: 962 Weight: 1.00 Name: ENSTTRP00000009665/1-1090 Len: 1171 Check: 169 Weight: 1.00 Name: bmy_01896T0/1-979 Len: 1171 Check: 7451 Weight: 1.00 Name: BACU009241/1-1005 Len: 1171 Check: 3481 Weight: 1.00 // 1 50 ENSP00000262315/1-975 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026311/1-978 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009665/1-1090 TRVGAFSVGW GAWQNEDLLG PATXXXXXXX XXXXXXXXTL APALVSLPRG bmy_01896T0/1-979 ---------- ---------- ---------- ---------- ---------- BACU009241/1-1005 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000262315/1-975 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026311/1-978 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009665/1-1090 PAPGAVTDHR GAPRPPGRSV RPRPPSRPRP PTAQTGGRAD QWRARIPPLQ bmy_01896T0/1-979 ---------- ---------- ---------- ---------- ---------- BACU009241/1-1005 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000262315/1-975 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000026311/1-978 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000009665/1-1090 LQRTDSPRPA RAQPRPRPAP PADQWRAPDT PAVDWRRRRF GQELRAGAGG bmy_01896T0/1-979 ---------- -------PPL PLTNGERPGT PAVDWRRRVA LGWSCAREVR BACU009241/1-1005 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000262315/1-975 -------MED YEQELCGVED DFHNQFAAEL EVLAELEGAS TPSPSGVPLF ENSBTAP00000026311/1-978 -------MED YELELYGVED DFDSQFAAEL EVLAELEGSA ALSPSRDPRP ENSTTRP00000009665/1-1090 SQPAAGGMED YERELYGVED DFHSQFAAEL EVLAELEGTT AMSPSRDPWP bmy_01896T0/1-979 SRRRAA-MED YERELYGVED DFHSQFAAEL EVLDELEGTT AMSPSRDPWP BACU009241/1-1005 -------MED YERELYGVED DFHSQFAAEL EVLAELEGTT AMSPSRDPWP 201 250 ENSP00000262315/1-975 TAGRPPRTFE EALARGDAAS SPAPAASVGS SQGGARKRQV DADLQPAGSL ENSBTAP00000026311/1-978 TVGRPRQTFE EAIVGGDAAI HCSPGGPPRN SKGSVRKRHL APDIQGDRSL ENSTTRP00000009665/1-1090 TVGRPRLTFE ETIAGGNAAT HCSPGGPPRN SKGGARKRQL AADIHGDRPL bmy_01896T0/1-979 TVGRPRLTFE ETIAGGNAAT HCSPAGPPRN SKGGARKRQL AADIHGDRPL BACU009241/1-1005 TVGRPRLTFE ETIAGGNAAT HCSPGGPPRN SKGGARKRQL AADIHGDRPL 251 300 ENSP00000262315/1-975 PHAPRIKRPR LQVVKRLNFR SEEMEEPPPP DSSPTDITPP PSPEDLAELW ENSBTAP00000026311/1-978 PPAPHIKRSR LQAVRRLNFR SEEMEEMTPP DSPTLDITPP PSPEIPDELL ENSTTRP00000009665/1-1090 PPTPKVKRSR LEAARRLNFR SDEMEEPLPP DSPTQDITPP PSPEVPAELW bmy_01896T0/1-979 PPTPKVKRSR LEAARRLNFR SDEMEEPLPP DSPTQDITPP TSPEVPAELW BACU009241/1-1005 PLTPKVKRSR LEAARRLNFR SDEMEELLPP DSPTQDITPP PSPEVPAELW 301 350 ENSP00000262315/1-975 GHGVSEAAAD VGLTRASPAA RNPVLRRPPI LEDYVHVTST EGVRAYLVLR ENSBTAP00000026311/1-978 GEGPLDSGAD AGLTQASLAT RNPVLRRPPV LEDYVNVTST GGDRAFLVLR ENSTTRP00000009665/1-1090 GKGSLDTGAD VGLTKASPAA RNPVLRRPPV LEDYINVTST DGDRAFLVLR bmy_01896T0/1-979 GKGPLDTGAD VGLTRASPAA RNPVLRRPPV LEDYINVTST GGDRAFLVLR BACU009241/1-1005 GKGPLDTGAD VALTRASPAA RNPVLRRPPV LEDYINVTST GGDRAFLVLR 351 400 ENSP00000262315/1-975 ADPMAPGVQG SLLHVPWRGG GQLDLLGVSL ASLKKQVDGE RRE--RLLQE ENSBTAP00000026311/1-978 ADPVGTGVQS PFHDTGWRGR GQLDLLGMPF TSLKEKVDSE RRR--RLLEE ENSTTRP00000009665/1-1090 ADPVGTGVQS PLLDIRWRGR GQLDLLGVSF ASLKEKIDSE RRQ--RLLEE bmy_01896T0/1-979 ADPVGTGVQS PLLDIRWRGR GQLDLLGVSF ASLKEKIDSE ---------- BACU009241/1-1005 ADPVGTGVQS PLLDIRWRGR GQLDLLGVSF ASLKEKIDSE RRQQLQLLDE 401 450 ENSP00000262315/1-975 AQKLSDTLHS LRSGE-EEAA QPLGAPEEEP TDGQDASSHC LWVDEFAPRH ENSBTAP00000026311/1-978 AQRLSDMLCS LRSQEVEEET QPSGAPEEEP ADSQDASQHC LWVDEFAPQR ENSTTRP00000009665/1-1090 AQRLSDTLC- -RSEEVEEGP QPSGASEEEP ADSQDASQHC LWVDEFAPQC bmy_01896T0/1-979 ---------- ---------- ---------- ---------- ---------- BACU009241/1-1005 AQRLSGTLC- -RSEEVEEGP QPSGAPEEEP ADSQDASQHC LWVDEFAPQR 451 500 ENSP00000262315/1-975 YTELLSDDFT NRCLLKWLKL WDLVVFGHER PSRKPRPSVE PARVSKEATA ENSBTAP00000026311/1-978 YTELLSDDFT NRCLLKWLKL WDLVVFGREK PVQKPRPSAE PARGGKEATA ENSTTRP00000009665/1-1090 YTELLSDDFT NRCLLKWLKL WDLVVFGREW PTRKPRPSVE PARGGKEATA bmy_01896T0/1-979 --------FT NRCLLKWLKL WDLVVFGRER PTRKPRPSVE PARGGKEATA BACU009241/1-1005 YTELLSDDFT NRCLLKWLKL WDLVVFGRER PTRKPRPSVE PARGGKEATA 501 550 ENSP00000262315/1-975 PGKWKSHEQV LEEMLEAGLD PSQRPKQKVA LLCGPPGLGK TTLAHVIARH ENSBTAP00000026311/1-978 SSKWKSHEQV LEEMLEAELD PSGRPRQKVA LLCGPPGLGK TTLAHVIARH ENSTTRP00000009665/1-1090 SSKWKSHGQV LEEMLEAELD PSGRPRQKVA LLCGPPGLGK TTLAHVIARH bmy_01896T0/1-979 SSKWKSHGQV LEEMLEAELD PSGRPRQKVA LLCGPPGLGK TTLAHVIARH BACU009241/1-1005 SSKWKSHGQV LEEMLEAELD PSGRPRQKVA LLCGPPGLGK TTLAHVIARH 551 600 ENSP00000262315/1-975 AGYSVVEMNA SDDRSPEVFR TRIEAATQME SVLGAGGKPN CLVIDEIDGA ENSBTAP00000026311/1-978 AGYCVVEMNA SDDRSPEAFR TRIEAATQME SVLGAGGRPN CLVIDEIDGA ENSTTRP00000009665/1-1090 AGYSVVEMNA SDDRSPEAFR TRIEAATQME SVLGTGGRPN CLVIDEIDGA bmy_01896T0/1-979 AGYSVVEMNA SDDRSPEAFR TRIEAATQME SVLGTGGRPN CLVIDEIDGA BACU009241/1-1005 AGYSVVEMNA SDDRSPEAFR TRIEAATQME SVLGTGGRPN CLVIDEIDGA 601 650 ENSP00000262315/1-975 PVAAINVLLS ILNRKGPQEV GPQGPAVPSG GGRRRRAEGG LLMRPIICIC ENSBTAP00000026311/1-978 PTAAINVLLS VLDRKGPQQA GPGGPSVPTG GGRRRRAEAG LLMRPIICIC ENSTTRP00000009665/1-1090 PTAAINVLLS ILDRQGRQEA EPGGPAVPTG GGRRRRAEGG ILMRPIICIC bmy_01896T0/1-979 PTAAINVLLS VLDRQGPQEA EPGGPAVPTG GGRRRRAEGG ILMRPIICIC BACU009241/1-1005 PTAAINVLLS VLDRQGPQEA DPGGPAVPTG GGRRRWAERG ILMRPIICIC 651 700 ENSP00000262315/1-975 NDQFAPSLRQ LKQQAFLLHF PPTLPSRLVQ RLQEVSLRQG MRADPGVLAA ENSBTAP00000026311/1-978 NDPFAPSLRQ LKQQALLLHF PPTLPSRLMQ RLQEISLRRG MRADPGALAA ENSTTRP00000009665/1-1090 NDQFVPSLRQ LKQQALLLHF PPTLPSRLTQ RLQE-----G MRPDPGALAA bmy_01896T0/1-979 NDQFAPSLRQ LKQQALLLHF PPTLPSRLTQ RLQEISLRRG MRADPGALAA BACU009241/1-1005 NDQFAPSLRQ LKQQALLLHF PPTLPSRLTQ RLQEISLRRG MRADPGALAA 701 750 ENSP00000262315/1-975 LCEKTDNDIR ACINTLQFLY SRGQRELSVR DVQATRVGLK DQRRGLFSVW ENSBTAP00000026311/1-978 LCEKTDNDIR ACINALQFLH RRGQRELSVQ AVQSTRIGLK DQRKGLFSVW ENSTTRP00000009665/1-1090 LCEKTDNDIR ACINALQFLH GRGQRELSVQ AVQTTRIGLK DQRKGLFSVW bmy_01896T0/1-979 LCEKTDNDIR ACINALQFLH GRGQRELSVQ AVQTTRIGLK DQRKGLFSVW BACU009241/1-1005 LCEKTDNDIR ACINALQFLH GRGQRELSVQ AVQTTRIGLK DQRKGLFSVW 751 800 ENSP00000262315/1-975 QEVFQLPRAQ RRRVGQDPAL PADTLLLGDG DAGS------ --LTSASQRF ENSBTAP00000026311/1-978 QEVFQLPRAQ RRRVRQDSTL RTHMLLLGDQ LSGSGPLAAE APLTTAAQRF ENSTTRP00000009665/1-1090 QEVFQLPQAR R--------- ---------- ---------- ---------F bmy_01896T0/1-979 QEVFQLPQAQ RRRVGQDPTL PTHTLLLGDG HMGSGPLAAK VPLTAASQRF BACU009241/1-1005 QEVFQLPQAQ RRRVGQDPTL PTHTLLLGDG HMGSGPLAAK VPLTTASQRF 801 850 ENSP00000262315/1-975 YRVLHAAASA GEHEKVVQGL FDNFLRLRLR DSSLGAVCVA LDWLAFDDLL ENSBTAP00000026311/1-978 YHILHVAMSA GEHEKVVQGL FDNFLRMRLR DSSLGAVCTA LDWLAFDDLL ENSTTRP00000009665/1-1090 YHILHVAASA GEHEKVVQGL FDNFLRLRLR DSSLAAVCIA LDWLAFDDLL bmy_01896T0/1-979 YHILHVAASA GEHEKVVQGL FDNFLRLRLR DSSLAAVCIA LDWLAFDDLL BACU009241/1-1005 YHILHVAASA GEHEKVVQGL FDNFLRLRLR DSSLAAVCIA LDWLAFDDLL 851 900 ENSP00000262315/1-975 AGAAHHSQSF QLLRYPPFLP VAFHVLFASS HTPRITFPSS QQE------- ENSBTAP00000026311/1-978 GRAALHSQSF QLMCYLPFLL PAFHLLFASS HVPRITFPSS QQE------- ENSTTRP00000009665/1-1090 SRAAHHGQSF QLLHYLPFLP PAFHLLFASS HVPRITFPTS QQE------- bmy_01896T0/1-979 GRAAHHGQSF QLLRYLPFLP PAFHLLFASS HVPRITFPSS QQEVRPTPCP BACU009241/1-1005 GRAAHHGQSF QLLRYLPFLP PAFHLLFASS HVPRITFPSS QQEVRPMPCP 901 950 ENSP00000262315/1-975 ---------- ---------- AQNRMSQMRN LIQTLVSGIA PATRSRATPQ ENSBTAP00000026311/1-978 ---------- ---------- AQNRMNQTQN LIQTLVSGIT PATRSWAAPQ ENSTTRP00000009665/1-1090 ---------- ---------- AQNRMSRTHN LMQTLVSGIT PATRSRAAPQ bmy_01896T0/1-979 YPGSNPGALG DLVLVRPPPQ AQNRMSRTHN LIQTLVSGIT PATRSRAAPQ BACU009241/1-1005 YPGSNPGPLG DLVLVRPPPQ AQNRMSRTHN LIQTLVSGIT PATRSRAAPQ 951 1000 ENSP00000262315/1-975 ALLLDALCLL LDILAPKLRP VSTQLYSTRE KQQLASLVGT MLAYSLTYRQ ENSBTAP00000026311/1-978 ALILDTLCLL LDILTPKLRP VSTQLYSARE KQQLASLVGT MLAYSLTYRQ ENSTTRP00000009665/1-1090 ALILDTLCLL LDILAPKLRP VSTQLYSARE KQQLASLVGT MLAYSLTYCQ bmy_01896T0/1-979 ALILDTLCLL LDILAPKLRP VSTQLYSARE KQQLASLVGT MLAYSLTYCQ BACU009241/1-1005 ALILDTLCLL LDILAPKLRP VSTQLYSSRE KQQLASLVGT MLAYSLTYCQ 1001 1050 ENSP00000262315/1-975 ERTPDGQYIY RLEP-NVEEL CRFPELPARK PLTYQTKQLI AREIEVEKMR ENSBTAP00000026311/1-978 DRTPDGQYIY RLEP-NVEEV CRFPELPARK PLTYQAKQLI AREVEVEKMR ENSTTRP00000009665/1-1090 ERTPDGQYVY RLEP-NVEDV CRFPELPTRK PLTYQAKQLI AREIEVEKMR bmy_01896T0/1-979 ERTPDGQYVY RLEPRNVEDV CRFPELPTRK PLTYQAKQLI AREIEVEKMR BACU009241/1-1005 ERTPDGQYVY RLEP-NVEDV CRFPELPTRK PLTYQAKQLI AREIEVEKMR 1051 1100 ENSP00000262315/1-975 RAEASARVEN SPQVDGSPPG LEGLLGGIGE KGVHRPAPRN HEQRLEHIMR ENSBTAP00000026311/1-978 RVEASARARD GPQVDGGPP- -----GGSGE KELQPPAPCN HKQRLECILK ENSTTRP00000009665/1-1090 RVEALARARV GPQVDGGPL- -----GGTGE KGAQPSAPCS HEQRLECILK bmy_01896T0/1-979 RVEALARARV GXQVDGGPL- -----GGTGE KGAQPSSPCS HEQRLECILK BACU009241/1-1005 RVEALARARV GPQVDGGPL- -----GGTGE KGAQPSAPCS HEQRLECILK 1101 1150 ENSP00000262315/1-975 RAAREEQPEK DFFGRVVVRS TAVPSAGDTA PEQDSVERRM GTAVGRSEVW ENSBTAP00000026311/1-978 RAALEEQPER DFFGRVVVKR AAAPSTGHEA PETDTAERRV GTAVGRSDVW ENSTTRP00000009665/1-1090 RAALEEQPER DFFGRVVVKR AAAPSTEHAA PETDTAEQRM GTAVGRSDVW bmy_01896T0/1-979 RAALEEQPER DFFGRVVVKR AAAPSTEHAA PETDTAEQRM GTAVGRSDVW BACU009241/1-1005 RAALEEQPER DFFGRVVVKR AAAPSTEHAA PETDTAEQRM GTAVGRSDVW 1151 1200 ENSP00000262315/1-975 FRFNEGVSNA VRRSLYIRDL L ENSBTAP00000026311/1-978 FRFKEGVSNA VRRSLYIRDL L ENSTTRP00000009665/1-1090 FRFKEGVSNA VRRSLYIRDL L bmy_01896T0/1-979 FRFKEGVSNA VRRSLYIRDL L BACU009241/1-1005 FRFKEGVSNA VRRSLYIRDL L