KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:28:40 2014 Check: 00 .. Name: ENSTTRP00000003542/1-553 Len: 579 Check: 582 Weight: 1.00 Name: ENSP00000264819/1-545 Len: 579 Check: 9815 Weight: 1.00 Name: ENSBTAP00000026341/1-561 Len: 579 Check: 7642 Weight: 1.00 Name: bmy_06625T0/1-554 Len: 579 Check: 2078 Weight: 1.00 Name: BACU006558/1-537 Len: 579 Check: 7686 Weight: 1.00 // 1 50 ENSTTRP00000003542/1-553 ----MAEXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXVS MGSADHQFHL ENSP00000264819/1-545 ----MAEASS LGRQSPRVVS CLEHSLCPGE PGLQTTAVVS MGSGDHQFNL ENSBTAP00000026341/1-561 ----MAEASS LERQSPGAAS CLPHSLCPGE PNLQTTAVVS MGSADHQFHL bmy_06625T0/1-554 MVIRNRAASS LERRSPGLAS CLSHSLCPGE PGLQTTAVVS MGSADHQFHL BACU006558/1-537 ---------- ---------- ---------- ---------- MGSADHQFHL 51 100 ENSTTRP00000003542/1-553 AEILSRNYGV QEEREGAARG PEKPEEELEK DFVSQSSDMP LDELLALYGY ENSP00000264819/1-545 AEILSQNYSV RGECEEASRC PDKPKEELEK DFISQSNDMP FDELLALYGY ENSBTAP00000026341/1-561 AEILSQNYGV REEHEGAAPG PEKPEEELEK DFVSQSSDMP LDELLALYGY bmy_06625T0/1-554 AEILSRNYGV REEHEGAARG PEKSEEELEK DFVSQSSDMP LDELLALYGY BACU006558/1-537 AEILSRNYGV REEHEGAARG PEKPEEELEK DFVSQSSDMP LDELLALYGY 101 150 ENSTTRP00000003542/1-553 EPSDPISERQ SEGSDATTNL PDMTLDKEQI AKDLLSGEEE EETQSSADDL ENSP00000264819/1-545 EASDPISDRE SEGGDVAPNL PDMTLDKEQI AKDLLSGEEE EETQSSADDL ENSBTAP00000026341/1-561 ETSDPISERE SEGSDTAAHL PDMTLDKDQI AKDLLSGEEE EETQSSADDL bmy_06625T0/1-554 EASDPISERQ SEGSDAAANL PDMTLDKEQI AKDLLSGEEE EETQSSADDL BACU006558/1-537 EASDPISERQ SEGSDAAANL PDMTLDKEQI AKDLLSGEEE EETQSSADDL 151 200 ENSTTRP00000003542/1-553 TPSVTSHEAS DLFPNQSGPR FLPDADKEPG SSSSSDTEED PLPANKCKKE ENSP00000264819/1-545 TPSVTSHEAS DLFPNRSGSR FLADEDREPG SSASSDTEED SLPANKCKKE ENSBTAP00000026341/1-561 TPSVTSHEAS DLFPSQSGSC FLADADKEPG SSSSSDAEED PLPANKCKKE bmy_06625T0/1-554 TPSVTSHEAS DLFPNQSGSR FLPDADKEPG SSSSSDTEED PLPANKCKKE BACU006558/1-537 TPSVTSHEAS DLFPNQSGPR FLPDADKEPG SSSSSDTEED PLPANKCKKE 201 250 ENSTTRP00000003542/1-553 IMVGPQFQAD LSKLHSNRQG EKLYENEDQL LWVXXXXXXX XXXXXXXXXX ENSP00000264819/1-545 IMVGPQFQAD LSNLHLNRHC EKIYENEDQL LWDPSVLPER EVEEFL-YRA ENSBTAP00000026341/1-561 IMVGPQFQAD LSNLHSNRHG EKIYENEDQL LWDPNILPER EVEEFL-YRA bmy_06625T0/1-554 IMVGPQFQAD LSKLHSNRQG EKIYENEDQL LWDPNILPER EVEEFL-YRA BACU006558/1-537 IMVGPQFQAD LSKLHSNRQG EKIYENEDQL LWDPNILPER EVEEFL-YRA 251 300 ENSTTRP00000003542/1-553 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000264819/1-545 VKRRWHEMAG PQLPEGEAVK DSEQALYELV KCNFNVEEAL RRLRFNVKVI ENSBTAP00000026341/1-561 VKRRWHEMAG SQLPEGEAVK DSEQALYELV KCNFNAEEAL RRLRFNVKVI bmy_06625T0/1-554 AKRRWHEVAE SQLPEGEAVK DSEQALYELV KCNFNAEEAL RRLRFNVKVI BACU006558/1-537 AKRRWHEVAE SQLPEGEAVK DSEQALYELV KCNFNAEEAL QRLRFNVKVI 301 350 ENSTTRP00000003542/1-553 XXGLC----- --AWSEEERR NFEHGFRVHG KNFHLIQANK VRTRSVGECV ENSP00000264819/1-545 RDGLC----- --AWSEEECR NFEHGFRVHG KNFHLIQANK VRTRSVGECV ENSBTAP00000026341/1-561 RDGLC----- --AWSEEERR NFEHGFRVHG KNFHLIQANK VRTRSVGECV bmy_06625T0/1-554 R--------- --GWEGAGGP ADRHRPQ--- ---------- VRTRSVGECV BACU006558/1-537 RAALAIPTPH GDAAVGEAGP G-QYRAHAWG LGVFPGRLEW VRTRSVGECV 351 400 ENSTTRP00000003542/1-553 EYYYLWKKSE RYDYFSQQTR LGRRKYGPSG TTDADQDLDG GDPDGPGRPR ENSP00000264819/1-545 EYYYLWKKSE RYDYFAQQTR LGRRKYVPSG TTDADQDLDG SDPDGPGRPR ENSBTAP00000026341/1-561 EYYYLWKKSE RYDYFSQQTR LGRRKYGPSG NTDADQDLEG SDPDGPGRPR bmy_06625T0/1-554 EYYYLWKKSE RYDYFSQQTR LGRRKYGPSG TTDADQDLDG GDPDGPGRPR BACU006558/1-537 EYYYLWKKSE RYDYFSQQTR LGRRKYGPSG TTDADQDLDG GDPDGPGRPR 401 450 ENSTTRP00000003542/1-553 ---------- -----PERDP LARMRTEPLS MGSSTSGSLG APGEASDSPL ENSP00000264819/1-545 ---------- -----PEQDT LTGMRTDPLS V-DGTAGGLD EPGVASDGLP ENSBTAP00000026341/1-561 SSPPLPLPAA AHGPGPEHDR LAQMHTEPLS MGSSMSRSLG EPGEALDVPP bmy_06625T0/1-554 SSPPLPLPAT ADGPGPERDP LARMRTEPLS VGSSTSGSLG EPGEAPDGPP BACU006558/1-537 SSPPLPLPAT ADGPGPERDA LARMHTEPLS VGSSTSGSLG EPGEGPDGPP 451 500 ENSTTRP00000003542/1-553 SSEPGPCSFQ PPDVDTPPAV PLPRRPPALA EPAFYSPTTA ASEPGASPRL ENSP00000264819/1-545 SSEPGPCSFQ QL--DESPAV PLSHRPPALA DPASYQPAVT APEPDASPRL ENSBTAP00000026341/1-561 SSEPGPRSFP PL--DEPSAL PSSRRPPALA EPAFFPPATA APEPGASPRL bmy_06625T0/1-554 SSEPGPCSFQ PLDVDAPSAV PLPRRPPALA EPAFYSPTTA APEPGASPRL BACU006558/1-537 SSEPGPCSFQ PLDVDAPSAV PLPRRPPALA EPAFYSPTTA ASEPGASPRL 501 550 ENSTTRP00000003542/1-553 AVDLALPGAL PEELPLISSH VDMDGEPEEA VAPAQVALSV AEFGLIGIGD ENSP00000264819/1-545 AVDF----AL PKELPLISSH VDLSGDPEET VAPAQVALSV TEFGLIGIGD ENSBTAP00000026341/1-561 AVDL----TL PEELPLVSSH EDTDGEPEET VGPPQVALSV AEFGLIGIGD bmy_06625T0/1-554 AVDLALPGAL PEELPLISSH VDMDGEPEEA VAPAQVALSV AEFGLIGIGD BACU006558/1-537 AVDLALPGAL PEELPLISSH VDMDGEPEEA VAPAQVALSV AEFGLIGIGD 551 600 ENSTTRP00000003542/1-553 VNPFLAAHPA CPAPALHSEP LSHCNVMTC ENSP00000264819/1-545 VNPFLAAHPT CPAPGLHSEP LSHCNVMTC ENSBTAP00000026341/1-561 VNPFLASHPA CPASGLHSEP LSHCNVMTC bmy_06625T0/1-554 VNPFLATHPA CPAPGLHSEP LSHCNVMTC BACU006558/1-537 VNPFLAAHPT CPAPGLHSEP LSHCNVMTC