KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:28:42 2014 Check: 00 .. Name: ENSTTRP00000004461/1-859 Len: 966 Check: 3377 Weight: 1.00 Name: bmy_11483T0/1-927 Len: 966 Check: 121 Weight: 1.00 Name: ENSP00000229268/1-858 Len: 966 Check: 4506 Weight: 1.00 Name: BACU003072/1-875 Len: 966 Check: 6372 Weight: 1.00 Name: ENSBTAP00000026356/1-858 Len: 966 Check: 2621 Weight: 1.00 // 1 50 ENSTTRP00000004461/1-859 MAELSEEALL SVLPTIRVPK AGDRVHKDEC AFSFDTPESE GGLYICMNTF bmy_11483T0/1-927 MAELSEEALL SVLPTIRVPK AGDRVHKDEC AFSFDTP--- ---------- ENSP00000229268/1-858 MAELSEEALL SVLPTIRVPK AGDRVHKDEC AFSFDTPESE GGLYICMNTF BACU003072/1-875 MAELSEEALL SVLPTIRVPK AGDRVHKDEC AFSFDTPESE GGLYICMNTF ENSBTAP00000026356/1-858 MAELSEEALL SVLPTIRVPK AGDRVHKDEC AFSFDTPESE GGLYICMNTF 51 100 ENSTTRP00000004461/1-859 LGFGKQYVER HFNKTGQRVY LHLRRTRRPK EEDTTAGTGD PPRKKPTRLA bmy_11483T0/1-927 ------YVER HFNKTGQRVY LHLRRTRRPK EEDTTASTGD PPRKKPTRLA ENSP00000229268/1-858 LGFGKQYVER HFNKTGQRVY LHLRRTRRPK EEDPATGTGD PPRKKPTRLA BACU003072/1-875 LGFGKQYVER HFNKTGQRVY LHLRRTRRPK EEDTTASTGD PPRKKPTRLA ENSBTAP00000026356/1-858 LGFGKQYVER HFNKTGQRVY LHLRRTRRPK EEDATSGTGD PPRKKPTRLA 101 150 ENSTTRP00000004461/1-859 IGVEGGFELN EEKYEYDEDV KIVILPDYLE IARDGLGGLP DIVRDRVTSA bmy_11483T0/1-927 IGVEGGFDLS EEKFEYDEDV KIIILPDYLE IARDGLGGLP DIVRDRVTSA ENSP00000229268/1-858 IGVEGGFDLS EEKFELDEDV KIVILPDYLE IARDGLGGLP DIVRDRVTSA BACU003072/1-875 IGVEGGFDLS EEKFEYDEDV KIIILPDYLE IARDGLGGLP DMVRDRVTSA ENSBTAP00000026356/1-858 IGVEGGFDLN EEKFEYDEDV KIVILPDYLE IARDGLGGLP DIVRDRVTSA 151 200 ENSTTRP00000004461/1-859 VEALLSADSA SRKQEVQAWD GEVRQVSKHA FNVKQLDSPA RIPPCGWKCS bmy_11483T0/1-927 VEALLSADSA SRKQEVQAWD GEVRQVSKHA FNLKQLDSPA RIPPCGWKCS ENSP00000229268/1-858 VEALLSADSA SRKQEVQAWD GEVRQVSKHA FSLKQLDNPA RIPPCGWKCS BACU003072/1-875 VEALLSADSA SRKQEVQAWD GEVRQVSKHA FNLKQLDSPA RIPPCGWKCS ENSBTAP00000026356/1-858 VEALLSADSA SRKQEVQAWD GEVRQVSKHA FNLKQLDNPA RIPPCGWKCS 201 250 ENSTTRP00000004461/1-859 KCDMRENLWL NLTDGSILCG RRYFDGSGGN NHAVEHYRET GYPLAVKLGT bmy_11483T0/1-927 KCDMRENLWL NLTDGSILCG RRYFDGSGGN NHAVEHYRES GYPLAVKLGT ENSP00000229268/1-858 KCDMRENLWL NLTDGSILCG RRYFDGSGGN NHAVEHYRET GYPLAVKLGT BACU003072/1-875 KCDMRENLWL NLTDGSILCG RRYFDGSGGN NHAVEHYRES GYPLAVKLGT ENSBTAP00000026356/1-858 KCDMRENLWL NLTDGSILCG RRYFDGSGGN NHAVEHFRET GYPLAVKLGT 251 300 ENSTTRP00000004461/1-859 ITPDGADV-- ---------- ---------- ---------- --YSYDED-- bmy_11483T0/1-927 ITPDGAGTTP APGRPPPRGN PWVLTVNSFH VTRTRRETLP IGWRHDESSP ENSP00000229268/1-858 ITPDGADV-- ---------- ---------- ---------- --YSYDED-- BACU003072/1-875 ITPDGADV-- ---------- ---------- ---------- --YSYDED-- ENSBTAP00000026356/1-858 ITPDGADV-- ---------- ---------- ---------- --YSYDED-- 301 350 ENSTTRP00000004461/1-859 ---------- --------DM VLD------- ---------- ---------- bmy_11483T0/1-927 YPVSPHLPGQ PVPEGLTASL MLEGAKSVAL TARPSVPPRP LRAGGGVGGK ENSP00000229268/1-858 ---------- --------DM VLD------- ---------- ---------- BACU003072/1-875 ---------- --------DM VLD------- ---------- ---------- ENSBTAP00000026356/1-858 ---------- --------DM VLD------- ---------- ---------- 351 400 ENSTTRP00000004461/1-859 ---------P NLAEHLSHFG IDMLKMQKTD KTMTELEIDM NQRIGEWELI bmy_11483T0/1-927 AGPEPPPLTP LLRPVLDVYS YDEDDM--TD KTMTELEIDM NQRIGEWELI ENSP00000229268/1-858 ---------P SLAEHLSHFG IDMLKMQKTD KTMTELEIDM NQRIGEWELI BACU003072/1-875 ---------P NLAEHLSHFG IDMLKMQKTD KTMTELEIDM NQRIGEWELI ENSBTAP00000026356/1-858 ---------P NLAEHLSHFG IDMLKMQKTD KTMTELEIDM NQRIGEWELI 401 450 ENSTTRP00000004461/1-859 QESGVPLKPL FGPGYTGIRN LGNSCYLNSV VQVLFSIPDF QRKYVDKLEK bmy_11483T0/1-927 QESGVPLKPL FGPGYTGIRN LGNSCYLNSV VQVLFSIPDF QRKYVDKLEK ENSP00000229268/1-858 QESGVPLKPL FGPGYTGIRN LGNSCYLNSV VQVLFSIPDF QRKYVDKLEK BACU003072/1-875 QESGVPLKPL FGPGYTGIRN LGNSCYLNSV VQVLFSIPDF QRKYVDKLEK ENSBTAP00000026356/1-858 QESAVPLKPL SGPGYTGIRN LGNSCYLNSV VQVLFSIPDF QRKYVDKLEK 451 500 ENSTTRP00000004461/1-859 IFQNAPTDPT QDFSTQVXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_11483T0/1-927 IFQNAPTDPT QDFSTQVAKL GHGLLSGEYS KPAPESGDGE QVPEQKEVQD ENSP00000229268/1-858 IFQNAPTDPT QDFSTQVAKL GHGLLSGEYS KPVPESGDGE RVPEQKEVQD BACU003072/1-875 IFQNAPTDPT QDFSTQVAKL GHGLLSGEYS KPAPESGDGE QVPEQKEVQD ENSBTAP00000026356/1-858 IFQNAPTDPT QDFSTQVAKL GHGLLSGEYS KPAPESGDGE QVTEQKEVQD 501 550 ENSTTRP00000004461/1-859 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXE DCRSSENPNE bmy_11483T0/1-927 GLAPRMFKAL IGKGHPEFST NRQQDAQEFF LHLINMVER- NCRSSENPNE ENSP00000229268/1-858 GIAPRMFKAL IGKGHPEFST NRQQDAQEFF LHLINMVER- NCRSSENPNE BACU003072/1-875 GIAPRMFKAL IGKGHPEFST NRQQDAQEFF LHLINMVER- NCRSSENPNE ENSBTAP00000026356/1-858 GIAPRMFKAL IGKGHPEFST NRQQDAQEFF LHLINMVER- NCRSSENPNE 551 600 ENSTTRP00000004461/1-859 VFRFLVEEKI KCLATEKVKY TQRVDYIMQL PVPMDAALNK EELLEYEEKK bmy_11483T0/1-927 VFRFLVEEKI KCLATEKVKY TQRVDYIMQL PVPMDAALNK EELLEYEEKK ENSP00000229268/1-858 VFRFLVEEKI KCLATEKVKY TQRVDYIMQL PVPMDAALNK EELLEYEEKK BACU003072/1-875 VFRFLVEEKI KCLATEKVKY TQRVDYIMQL PVPMDAALNK EELLEYEEKK ENSBTAP00000026356/1-858 VFRFLVEEKI KCLATEKVKY TQRVDYIMQL PVPMDAALNK EELLEYEEKK 601 650 ENSTTRP00000004461/1-859 RQAEEEKLPL PELVRAQVLF SSCLEAYGAP EQVDDFWSTA LQAKSVAVKT bmy_11483T0/1-927 RQAEEEKLPL PELVRAQVPF SSCLEAYGAP EQVDDFWSTA LQAKSVAVKT ENSP00000229268/1-858 RQAEEEKMAL PELVRAQVPF SSCLEAYGAP EQVDDFWSTA LQAKSVAVKT BACU003072/1-875 RQAEEEKLPL PELVRAQVPF SSCLEAYGAP EQVDDFWSTA LQAKSVAVKT ENSBTAP00000026356/1-858 RQAEEEKLPL PELVRAQVPF SSCLEAYGAP EQVDDFWSTA LQAKSVAVKT 651 700 ENSTTRP00000004461/1-859 TRFASFPDYL VIQIKKFTFG LDWVPKKLDV SIEMPEELDI SQLRGTGLQP bmy_11483T0/1-927 TRFASFPDYL VIQIKKFTFG LDWVPKKLDV SIEMPEELDI SQLRGTGLQP ENSP00000229268/1-858 TRFASFPDYL VIQIKKFTFG LDWVPKKLDV SIEMPEELDI SQLRGTGLQP BACU003072/1-875 TRFASFPDYL VIQIKKFTFG LDWVPKKLDV SIEMPEELDI SQLRGTGLQP ENSBTAP00000026356/1-858 TRFASFPDYL VIQIKKFTFG LDWVPKKLDV SIEMPEELDI SQLRGTGLQP 701 750 ENSTTRP00000004461/1-859 GEEELPDIAP PLVTPDEPKG SLGFYGNEDE DSFCSPHFSS PTSPMLDESV bmy_11483T0/1-927 GEEELPDIAP PLVTPDEPKG SLGFYGNEDE DSFCSPHFSS PTSPMLDESV ENSP00000229268/1-858 GEEELPDIAP PLVTPDEPKG SLGFYGNEDE DSFCSPHFSS PTSPMLDESV BACU003072/1-875 GEEELPDIAP PLVTPDEPKG SLGFYGNEDE DSFCSPHFSS PTSPMLDESV ENSBTAP00000026356/1-858 GEEELPDIAP PLVTPDEPKG SLGFYGNEDE DSFCSPHFSS PTSPMLDESV 751 800 ENSTTRP00000004461/1-859 IIQLVEMGFP MDACRKAVYY TGNSGAEAAM NWVMSHMDDP DFANPLILPG bmy_11483T0/1-927 IIQLVEMGFP MDACRKAVYY TGNSGAEAAM NWVMSHMDDP DFANPLILPG ENSP00000229268/1-858 IIQLVEMGFP MDACRKAVYY TGNSGAEAAM NWVMSHMDDP DFANPLILPG BACU003072/1-875 IIQLVEMGFP MDACRKAVYY TGNSGAEAAM NWVMSHMDDP DFANPLILPG ENSBTAP00000026356/1-858 IIQLVEMGFP MDACRKAVYY TGNSGAEAAM NWVMSHMDDP DFANPLILPG 801 850 ENSTTRP00000004461/1-859 SSGPGSTSAA ADPPPEDCVT TIVSMGFSRD QALKALRAT- ---------- bmy_11483T0/1-927 SSGPGSTSAA ADPPPEDCVT TIVSMGFSRD QALKALRAT- ---------- ENSP00000229268/1-858 SSGPGSTSAA ADPPPEDCVT TIVSMGFSRD QALKALRAT- ---------- BACU003072/1-875 SSGPGSTSAA ADPPPEDCVT TIVSMGFSRD QALKALRATV WAPPDEDGTC ENSBTAP00000026356/1-858 SSGPGSTSAA ADPPPEDCVT TIVSMGFSRD QALKALRAT- ---------- 851 900 ENSTTRP00000004461/1-859 ------NNSL ERAVDWIFSH IDDLDAEAAM DISEGRSAAD SISESIPVGP bmy_11483T0/1-927 ------NNSL ERAVDWIFSH IDDLDAEAAM DISEGRSAAD SISESIPVGP ENSP00000229268/1-858 ------NNSL ERAVDWIFSH IDDLDAEAAM DISEGRSAAD SISESVPVGP BACU003072/1-875 GKKRVGNNSL ERAVDWIFSH IDDLDAEAAM DISEGRSAAD SISESIPVGP ENSBTAP00000026356/1-858 ------NNSL ERAVDWIFSH IDDLDAEAAM DISEGRSAAD SISESIPVGP 901 950 ENSTTRP00000004461/1-859 KVRDGPGKYQ LFAFISHMGT STMCGHYVCH VKKEGRWVIY NDQKVCASEK bmy_11483T0/1-927 KVRDGPGKYQ LFAFISHMGT STMCGHYVCH IKKEGRWVIY NDQKVCASEK ENSP00000229268/1-858 KVRDGPGKYQ LFAFISHMGT STMCGHYVCH IKKEGRWVIY NDQKVCASEK BACU003072/1-875 KVRDGPGKYQ LFAFISHMGT STMCGHYVCH VKKEGRWVIY NDQKVCASEK ENSBTAP00000026356/1-858 KVRDGPGKYQ LFAFISHMGT STMCGHYVCH IKKEGRWVIY NDQKVCASEK 951 1000 ENSTTRP00000004461/1-859 PPKDLGYIYF YQRVAS bmy_11483T0/1-927 PPKDLGYIYF YQRVAS ENSP00000229268/1-858 PPKDLGYIYF YQRVAS BACU003072/1-875 PPKDLGYIYF YQRVAS ENSBTAP00000026356/1-858 PPKDLGYIYF YQRVAS