KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:28:43 2014 Check: 00 .. Name: ENSTTRP00000002081/1-467 Len: 505 Check: 6769 Weight: 1.00 Name: bmy_16946T0/1-469 Len: 505 Check: 775 Weight: 1.00 Name: ENSP00000337641/1-467 Len: 505 Check: 6578 Weight: 1.00 Name: ENSBTAP00000026361/1-467 Len: 505 Check: 6578 Weight: 1.00 Name: BACU018596/1-438 Len: 505 Check: 1501 Weight: 1.00 // 1 50 ENSTTRP00000002081/1-467 MSSAPTTPPS VDKVDGFSRK SVRKARQKRS QSSSQFRSQG KPIELTPLPL bmy_16946T0/1-469 MSSAPTTPPS VDKVDGFSRK SVRKARQKRS QSSSQFRSQG KPIELTPLPL ENSP00000337641/1-467 MSSAPTTPPS VDKVDGFSRK SVRKARQKRS QSSSQFRSQG KPIELTPLPL ENSBTAP00000026361/1-467 MSSAPTTPPS VDKVDGFSRK SVRKARQKRS QSSSQFRSQG KPIELTPLPL BACU018596/1-438 MSSAPTTPPS VDKVDGFSRK SVRKARQKRS QSSSQFRSQG KPIELTPLPL 51 100 ENSTTRP00000002081/1-467 LKDVPSSEQP ELFLKKLQQC CVIFDFMDTL SDLKMKEYKR STLNELVDYI bmy_16946T0/1-469 LKDVPSSEQP ELFLKKLQQC CVIFDFMDTL SDLKMKEYKR STLNELVDYI ENSP00000337641/1-467 LKDVPSSEQP ELFLKKLQQC CVIFDFMDTL SDLKMKEYKR STLNELVDYI ENSBTAP00000026361/1-467 LKDVPSSEQP ELFLKKLQQC CVIFDFMDTL SDLKMKEYKR STLNELVDYI BACU018596/1-438 LKDVPSSEQP ELFLKKLQQC CVIFDFMDTL SDLKMKEYKR STLNELVDYI 101 150 ENSTTRP00000002081/1-467 TISRGCLTEQ TYPEVVRM-- ----VSCNIF R-TLPPSDSN EFDPEEDE-- bmy_16946T0/1-469 TISRGCLTEQ TYPEVVRMYS KIQNVLCFLF CFTLRPFTVV GANSEKENLM ENSP00000337641/1-467 TISRGCLTEQ TYPEVVRM-- ----VSCNIF R-TLPPSDSN EFDPEEDE-- ENSBTAP00000026361/1-467 TISRGCLTEQ TYPEVVRM-- ----VSCNIF R-TLPPSDSN EFDPEEDE-- BACU018596/1-438 TISRGCLTEQ TYPEVVRM-- ----VSCNIF R-TLPPSDSN EFDPEEDE-- 151 200 ENSTTRP00000002081/1-467 -PTLEASWPH LQLVY---EF FIRFLESQEF QPSIAKKYID QKFVL----- bmy_16946T0/1-469 WASLTLPWLR CLAIYSELSL LVTAMNLIQK KMNLPLRHRG HTYSY----- ENSP00000337641/1-467 -PTLEASWPH LQLVY---EF FIRFLESQEF QPSIAKKYID QKFVL----- ENSBTAP00000026361/1-467 -PTLEASWPH LQLVY---EF FIRFLESQEF QPSIAKKYID QKFVL----- BACU018596/1-438 -PTLEASWPH LQLVY---EF FIRFLESQES QPSIAKKYID QKFVLQVSTL 201 250 ENSTTRP00000002081/1-467 ---------- ------QXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_16946T0/1-469 ---------- TVFYLQQLLE LFDSEDPRER DYLKTVLHRI YGKFLGLRAF ENSP00000337641/1-467 ---------- ------QLLE LFDSEDPRER DYLKTVLHRI YGKFLGLRAF ENSBTAP00000026361/1-467 ---------- ------QLLE LFDSEDPRER DYLKTVLHRI YGKFLGLRAF BACU018596/1-438 LWFHVFVFHY TVFYLQQLLE LFDSEDPRER DYLKTVLHRI YGKFLGLRAF 251 300 ENSTTRP00000002081/1-467 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XIINGFALPL KAEHKQFLVK bmy_16946T0/1-469 IRKQINNIFL RFVYETEHFN GVAELLEILG SIINGFALPL KAEHKQFLVK ENSP00000337641/1-467 IRKQINNIFL RFVYETEHFN GVAELLEILG SIINGFALPL KAEHKQFLVK ENSBTAP00000026361/1-467 IRKQINNIFL RFVYETEHFN GVAELLEILG SIINGFALPL KAEHKQFLVK BACU018596/1-438 IRKQINNIFL ---------- ---------- SIINGFALPL KAEHKQFLVK 301 350 ENSTTRP00000002081/1-467 VLIPLHTVRS LSLFHAQXXX XXXXXXXXXX ----XXXXXX XXXXXXXXXX bmy_16946T0/1-469 VLIPLHTVRS LSLFHAQLAY CIVQFLEKDP ----SLTEP- ---------- ENSP00000337641/1-467 VLIPLHTVRS LSLFHAQLAY CIVQFLEKDP ----SLTEPV IRGLMKFWPK ENSBTAP00000026361/1-467 VLIPLHTVRS LSLFHAQLAY CIVQFLEKDP ----SLTEPV IRGLMKFWPK BACU018596/1-438 VLIPLHTVRS LSLFHAQVEF CTTTFGSKIK YNLLSFHEAA SVCACHFMPP 351 400 ENSTTRP00000002081/1-467 XXXXXXVMFL GELEEILDVI EPSQFVKIQE PLFKQIAKCV SSPHFQVAER bmy_16946T0/1-469 ------VMFL GELEEILDVI EPSQFVKIQE PLFKQIAKCV SSPHFQVAER ENSP00000337641/1-467 TCSQKEVMFL GELEEILDVI EPSQFVKIQE PLFKQIAKCV SSPHFQVAER ENSBTAP00000026361/1-467 TCSQKEVMFL GELEEILDVI EPSQFVKIQE PLFKQIAKCV SSPHFQVAER BACU018596/1-438 AMFL--VMFL GELEEILDVI EPSQFVKIQE PLFKQIAKCV SSPHFQVAER 401 450 ENSTTRP00000002081/1-467 ALYYWNNEYI MSLIEENSNV ILPIMFSSLY RISKEHWNPA IVALVYNVLK bmy_16946T0/1-469 ALYYWNNEYI MSLIEENSNV ILPIMFSSLY RISKEHWNPA IVALVYNVLK ENSP00000337641/1-467 ALYYWNNEYI MSLIEENSNV ILPIMFSSLY RISKEHWNPA IVALVYNVLK ENSBTAP00000026361/1-467 ALYYWNNEYI MSLIEENSNV ILPIMFSSLY RISKEHWNPA IVALVYNVLK BACU018596/1-438 ALYYWNNEYI MSLIEENSNV ILPIMFSSLY RISKEHWNPA IVALVYNVLK 451 500 ENSTTRP00000002081/1-467 AFMEMNSTMF DELTATYKSD RQREKKKEKE REELWKKLED LELKRGLRRD bmy_16946T0/1-469 AFMEMNSTMF DELTATYKSD RQREKKKEKE REELWKKLED LELKRGLRRD ENSP00000337641/1-467 AFMEMNSTMF DELTATYKSD RQREKKKEKE REELWKKLED LELKRGLRRD ENSBTAP00000026361/1-467 AFMEMNSTMF DELTATYKSD RQREKKKEKE REELWKKLED LELKRGLRRD BACU018596/1-438 AFMEMNSTMF DELTATYKSD RQR------- ---------- ---------- 501 550 ENSTTRP00000002081/1-467 GIIPT bmy_16946T0/1-469 GIIPT ENSP00000337641/1-467 GIIPT ENSBTAP00000026361/1-467 GIIPT BACU018596/1-438 -----