KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:28:44 2014 Check: 00 .. Name: ENSTTRP00000013390/1-841 Len: 960 Check: 8195 Weight: 1.00 Name: ENSBTAP00000026367/1-831 Len: 960 Check: 9507 Weight: 1.00 Name: bmy_03137T0/1-815 Len: 960 Check: 4280 Weight: 1.00 Name: BACU015889/1-924 Len: 960 Check: 9970 Weight: 1.00 // 1 50 ENSTTRP00000013390/1-841 MASVGATPGR TPQGPGPREA SASFPSPAPV PEPREAEEED EEEPAEIHLC ENSBTAP00000026367/1-831 MASVAATPTR TPNGPGPGEA SASFPTVASD PGPREPEEEG EEEPAEIHLC bmy_03137T0/1-815 MASVGATPGR TPQGPGPGEA SASFPSPAPV PDPREAEEEE EEEPAEIHLC BACU015889/1-924 MASVGATPGR TPQGPGPGEA SASFPSSAPV PDPREAEEEE EEEPAEIHLC 51 100 ENSTTRP00000013390/1-841 VLWSSGYLGI AYYDTSDSTI YFMPDAPDHE SLQLLQRVLD EIDPQSVVTS ENSBTAP00000026367/1-831 VLWNSGYLGI AYYDTSDSTI HFMPDAPDHE SLKLLQRVLD EIDPRSVVTS bmy_03137T0/1-815 VLWNSGYLGI AYYDTSDSTI YFMPDAPDHE SLKLLQRVLD EIDPQSVVTS BACU015889/1-924 VLWNSGYLGI AYYDTSDSTI YFMPDAPDHE SLRLLQRVLD EINPQSVVTS 101 150 ENSTTRP00000013390/1-841 AKQDENMTRF LGKLASQEHR EPKRPEIILL PSVDFGLEIS KQRLLSGNYS ENSBTAP00000026367/1-831 AKQDENMTRF LGKLASQEHR EPKRPEIIFL PSVDFGLEIS KQRLLSGNYS bmy_03137T0/1-815 AKQDENMTRF LGKLASQEHR EPKRPEIIYL PSVDFGLEIS KQRLLSGNYS BACU015889/1-924 AKQDENMTRF LGKL------ ---------- -----GLEIS KQRLLSGNYS 151 200 ENSTTRP00000013390/1-841 FIPDSMTATE KILFLSSIIP FDCLLTPPRR GFTPPPLLIP SVRALGGLLK ENSBTAP00000026367/1-831 FLPDSMTTTE KILFLSSIIP FDCLLM---- ---------- -VRALGGLLK bmy_03137T0/1-815 FIPDSMTATE KILFLSSIIP FDCLLT---- ---------- -VRALGGLLK BACU015889/1-924 FIPDSMTATE KILFLSSIIP FDCLLT---- ---------- -VRALGGLLK 201 250 ENSTTRP00000013390/1-841 FLGRRRIGVE LEDYNVSIPI LGFKKFALTH LVSIDQDTYS VLQIFKSEPH ENSBTAP00000026367/1-831 FLGRRRIGVE LEDYNVSVPI LGFKKFVLTN LVSIDQDTYS VLQIFKSESH bmy_03137T0/1-815 FMGRRRIGVE LEDYNVSVPI LGFKKFVLTH LVSIDQDTYS VLQIFKSEPH BACU015889/1-924 FMGRRRIGVE LEDYNVSVPI LGFKKFVLTH LVSIDQDTYS VLQIFKSEPH 251 300 ENSTTRP00000013390/1-841 PSVYKVASGL KEGLSLFGIL NRCRCKWGEK LLRLWFTRPT QDLEELNSRL ENSBTAP00000026367/1-831 PSVYKVASGL KEGLSLFGIL NRCRCKWGEK LLRLWFTRPT QDLGELNSRL bmy_03137T0/1-815 PSVYKVASGL KEGLSLFGIL NRCRCKWGEK LLRLWFTRPT QDLGELNSRL BACU015889/1-924 PSVYKVASGL KEGLSLFGIL NRCRCKWGEK LLRLWFTRPT QDLGELNSRL 301 350 ENSTTRP00000013390/1-841 DVIQFFLLPQ NLDMAQMLHR LLGHIKNVPL ILKRMKLSHT KVSDWQVLYK ENSBTAP00000026367/1-831 DVIQFFLLPQ NLDMAQMLHR LLGHIKNVPL ILKRMTLSHT KVSDWQVLYK bmy_03137T0/1-815 DVIQFFLLPQ NLDMAQMLHR LLGHIKNVPL ILKRMKLSHT KVSDWQVLYK BACU015889/1-924 DVIQFFLLPQ NLDMAQMLHR LLGHIKNVPL ILKRMKLSHT KVSDWQVLYK 351 400 ENSTTRP00000013390/1-841 TVYSALGLRD ACRSLPQSIQ LFRDIAQEFS DDLHHIASLI GKVVDFEGSL ENSBTAP00000026367/1-831 TVYSALGLRD ACRSLPQSIQ LFRDIAQEFS DDLHHIASLI GKVVDFEGSL bmy_03137T0/1-815 TVYSALGLRD ACRSLPQSIQ LFRDIAQEFS DDLHHIASLI GKVVDFEGSL BACU015889/1-924 TVYSALGLRD ACRSLPQSIQ LFRDIAQEFS DDLHHIASLI GKVVDFEGSL 401 450 ENSTTRP00000013390/1-841 AENRFTVLPN IDPEIDEKKR RLTGLPSFLT EVARKELENL DPRIPSCSVI ENSBTAP00000026367/1-831 AENRFTVLPN IDPEIDEKKR RLMGLPSFLT EVARKELENL DSRIPSCSVI bmy_03137T0/1-815 AENRFTVLPS IDPEIDEKKR RLTGLPSFLT EVARKELENL DPRIPSCSVI BACU015889/1-924 AENRFTVLPN IDPEIDEKKR RLTGLPSFLT EVARKELENL DPRIPSCSVI 451 500 ENSTTRP00000013390/1-841 YIPLIGFLLC IPRLPSMVET SDFEIEGLDF MFLSEEKLHY RSARTKELDA ENSBTAP00000026367/1-831 YIPLIGFLLS IPRLPSMVET SDFEIEGLDF MFLSEEKLHY RSARTKELDA bmy_03137T0/1-815 YIPLIGFLLC IPRLPSMVET NDFEIEGLDF MFLSEEKLHY RSARTKELDA BACU015889/1-924 YIPLIGFLLC IPRLPSMVET NDFEIEGLDF MFLSEEKLHY RSARTKELDA 501 550 ENSTTRP00000013390/1-841 LLGDLHCDIR DQETLLMYQL QCQVLARAAV LTQVLDLASR LDVLLALASA ENSBTAP00000026367/1-831 LLGDLHCDIR DQETLLMHQL QCQVLARAAV LTRVLDLASR LDVLLALASA bmy_03137T0/1-815 LLGDLHCDIR DQETLLMYQL QCQVLARAAV LTRVLDLASR LDVLLALASA BACU015889/1-924 LLGDLHCDIR DQETLLMYQL QCQVLARAAV LTRVLDLASR LDVLLALASA 551 600 ENSTTRP00000013390/1-841 ARDYGYSRPR YSPRLLGVRI QNGRHPLMEL CARTFVPNSA ECGGYKGRVK ENSBTAP00000026367/1-831 ARDYGYSRPR YSPRLLGVRI QNGRHPLMEL CARTFVPNSA ECGGDAGRVK bmy_03137T0/1-815 ARDYGYSRPH YSPRLLGVRI QNGRHPLMEL CARTFVPNSA ECGGYKGRVK BACU015889/1-924 ARDYGYSRPH YSTRLLGVRI QNGRHPLMEL CARTFVPNSA ECGGYKGRVK 601 650 ENSTTRP00000013390/1-841 VITGPNSSGK SIYLKQ-SLI TFM-LVGSFV PAEK-RIRAV DAIFTRIHSC ENSBTAP00000026367/1-831 VITGPNSSGK SIYLKQVGLI TFMALVGSFV PAEEAEIGAV DAIFTRIHSC bmy_03137T0/1-815 VITGPNSSGK SIYLKQVGLI TFMALVGSFV PAEEAEIGAV DAIFTRIHSC BACU015889/1-924 VITGPNSSGK SIYLKQVGLI TFMALVGSFV PAEEAEIGAV DAIFTRIHSC 651 700 ENSTTRP00000013390/1-841 -SISLDLSTF -IDLN-QVAK AVNNATERSL VLIDEFGKGT NTVDGLALLA ENSBTAP00000026367/1-831 ESISLGLSTF MIDLN-QVAK AVNNATERSL VLVDEFGKGT NTVDGLALLA bmy_03137T0/1-815 ESISLGLSTF MIDLN-QVAK AVNNATERSL VLIDEFGKGT NTVDGLALLA BACU015889/1-924 ESISLGLSTF MIDLNQQVAK AVNNATERSL VLIDEFGKGT NTVDGLALLA 701 750 ENSTTRP00000013390/1-841 AVIRHWLALG PTCPHIFVAT NFLSLIQLQL LPQGPLVQYL TMETCEDGND ENSBTAP00000026367/1-831 AVIRHWLALG PTCPHVFVAT NFLSLVQLQL LPRGPLVQYL TMETCEDGDD bmy_03137T0/1-815 AVIRHWLALG PTCPHVFVAT NFLSLIQLQL LPQGPLVQYL ---------- BACU015889/1-924 AVIRHWLALG PTCPHIFVAT NFLSLIQLQL LPQGPLVQYL NMETCEDGND 751 800 ENSTTRP00000013390/1-841 LVFFYQVCEG VANASHASHT AAXXXXXXXX XXXXXXVSDL ICSGKPIKPV ENSBTAP00000026367/1-831 LVFFYQVCEG VARASHASHT AAQAGLPEKL IARGKQVSDL IRSGKPIKPV bmy_03137T0/1-815 ------VCEG VANASHASHT AAQAGLPEKL VARGKEVSDL ICSGKPIKPV BACU015889/1-924 LVFFYQVCEG VANASHASHT AAQAGLPEKL VARGKEVSDL ICSGKPIKPV 801 850 ENSTTRP00000013390/1-841 KELLKEKQME NCQ------- ---------- ---------- --------ML ENSBTAP00000026367/1-831 KELLKEKQME NCQ------- ---------- ---------- --------TL bmy_03137T0/1-815 KELLKEKQME NCQ------- ---------- ---------- --------TL BACU015889/1-924 KELLKEKQME KAMGSRGPGG LPLVQAPYTV LLLPLETSRQ DPGAQRFFLW 851 900 ENSTTRP00000013390/1-841 VDKFLTLDLE DPSL--DLHI F--------- ---------- ---------- ENSBTAP00000026367/1-831 VDKFLKLDLE DPSL--DLDI F--------- ---------- ---------- bmy_03137T0/1-815 VNKFLKLDLE DPSL--DLDI F--------- ---------- ---------- BACU015889/1-924 LQRMQALERE QDALWQGLEL LEHSQAWYEG RLREAQQQQL YLGALGENFP 901 950 ENSTTRP00000013390/1-841 ---------- ---------- ---------- ---------- ----MTQEVL ENSBTAP00000026367/1-831 ---------- ---------- ---------- ---------- ----MSQEVL bmy_03137T0/1-815 ---------- ---------- ---------- ---------- ----MSQEVL BACU015889/1-924 TDLHSEPGGP QLAHIQKVNI CLQNLIQGKV VSRQQKGVTQ PKGEMAQPGC 951 1000 ENSTTRP00000013390/1-841 PA---AATVL ENSBTAP00000026367/1-831 PA---ATTIL bmy_03137T0/1-815 PA---ATTIL BACU015889/1-924 PSGRRGPTRV