KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:28:45 2014 Check: 00 .. Name: ENSP00000288955/1-626 Len: 642 Check: 2579 Weight: 1.00 Name: ENSTTRP00000015317/1-605 Len: 642 Check: 9300 Weight: 1.00 Name: ENSBTAP00000026370/1-598 Len: 642 Check: 8114 Weight: 1.00 Name: bmy_04562T0/1-618 Len: 642 Check: 4613 Weight: 1.00 Name: BACU005782/1-604 Len: 642 Check: 7843 Weight: 1.00 // 1 50 ENSP00000288955/1-626 MSNELD---- ---------- --FRSVRLLK NDPVNLQKFS YTSEDEAWKT ENSTTRP00000015317/1-605 MSNELD---- ---------- --FRSVRLLK NDPVNFQKFP YTNEDEAWKT ENSBTAP00000026370/1-598 ---SFS---- ---------- --FRSVRLLK NDPVNFQKFP YTNEDEAWKT bmy_04562T0/1-618 MAEEFGLGQG HQQRVCGDPR GSFRSVRLLK NDPVNFQKFP YTNEDEAWKT BACU005782/1-604 MASAFS---- ---------- RSFRSVRLLK NDPVNFQKFP YTNEDEAWKT 51 100 ENSP00000288955/1-626 YLENPLTAAT KAMMRVNGDD DSVAALSFLY DYYMGPKEKR ILSSSTGGRN ENSTTRP00000015317/1-605 YLENPLTAAT KAMMRVNGDD ESVAALSFLY DYYMGPKEKR LLSSSTGGRN ENSBTAP00000026370/1-598 YLENPLTAAT KAMMRVNGDD DSVAALSFLY DYYMGPKEKR LLSSSTGGRN bmy_04562T0/1-618 YLENPLTAAT KAMMRVNGDD ESVAALSFLY DYYMGPKEKR LLSSSTGGRN BACU005782/1-604 YLENPLTAAT KAMMRVNGDD ESVAALSFLY DYYMGPKEKR LLSSSTGGRN 101 150 ENSP00000288955/1-626 DQGKRYYHGM EYETDLTPLE SPTHLMKFLT ENVSGTPEYP DLLKKNNLMS ENSTTRP00000015317/1-605 DQGKRYYHGM EYEMDLTPLE SPTHLMKFLT ENVSGAPEYP DVLKKNNLMS ENSBTAP00000026370/1-598 DQGKRYYHGM EYEMDLTPLE SPTHLMKFLT ENVSGTPEYP DVLKKNNLMS bmy_04562T0/1-618 DQGKRYYHGM EYEMDLTPLE SPTHLMKFLT ENVSGTPEYP DVLKKNNLMS BACU005782/1-604 DQGKRYYHGM EYEMDLTPLE SPTHLMKFLT ENVSGTPEYP DVLKKNNLMS 151 200 ENSP00000288955/1-626 LEGALPTPGK AAPLPAGPSK LEAGSVDSYL LPTTDMYDNG SLNSLFESIH ENSTTRP00000015317/1-605 LEGAAPTPGK ATLLTPGPSK LEAGSVDGYL LPTSDVYDNG SLSSLFESIH ENSBTAP00000026370/1-598 VEGAAPTPGK AALLPAGPSK LETGSVDSYL LPTSDVYDNG SLSSLFESIH bmy_04562T0/1-618 LEGAAPTPGK AALLTPGPSK LEAGSVDGYL LPTSDVYDNG SLSSLFESIH BACU005782/1-604 LEGAAPTPGK AALLTPGPSK LEAGSVDGYL LPTSDVYDNG SLSSLFESIH 201 250 ENSP00000288955/1-626 GVPPTQRWQP DSTFKDDPQE SMLFPDILKT SPEPPCPEDY PSLKSDFEYT ENSTTRP00000015317/1-605 GVPPTQRWQP DSTFKDDPQE SLLFPDILKT SPEPPCPEDY PSPKSDFEYT ENSBTAP00000026370/1-598 GVPPTQRWQP DSTFKDDPQE SLLFPDILKT SPEPPGPEDY PNPKSDFEYT bmy_04562T0/1-618 GVPPTQRWQP DSTFKDDPQE SLLFPDILKT SPEPPCPEDS PGPKSDFEYT BACU005782/1-604 GVPPTQRWQP DSTFKDDPQE SLLFPDILKT SPEPPCPEDY PSPKSDFEYT 251 300 ENSP00000288955/1-626 LGSPKAIHIK SGESPMAYLN KGQFYPVTLR TPAGGKGLAL SSNKVKSVVM ENSTTRP00000015317/1-605 LGSPKAIHIK SGESPMAYLN KGQFYPVTLR TPAGGKDLAL SSSKVKSVVM ENSBTAP00000026370/1-598 LGSPKAIHIK SGESPMAYLN KGQFYPVTLR TPAGGKGLAL SSNKVKSVVM bmy_04562T0/1-618 LGSPKAIHIK SGESPMAYLN KGQFYPVTLR TPAGGKGLAL SSSKVKSVVM BACU005782/1-604 LGSPKAILIK SGESPMAYLN KGQFYPVTLR TPAGGKGLAL SSSKVKSVVM 301 350 ENSP00000288955/1-626 VVFDNEKVPV EQLRFWKHWH SRQPTAKQRV IDVADCKENF NTVEHIEEVA ENSTTRP00000015317/1-605 VVFDNEKGPV EQLRFWKHWH SRQPTAKQRV IDVADCKENF NTVQHIEEVA ENSBTAP00000026370/1-598 VVFDNEKGPV EQLRFWKHWH SRQPTAKQRV IDVADCKENF NTVQHIEEVA bmy_04562T0/1-618 VVFDNEKGPV EQLRFWKHWH SRQPTAKQRV IDVADCKENF NTVQHIEEVA BACU005782/1-604 VVFDNEKGPV EQLRFWKHWH SRQPTAKQRV IDVADCKENF NTVQHIEEVA 351 400 ENSP00000288955/1-626 YNALSFVWNV NEEAKVFIGV NCLSTDFSSQ KGVKGVPLNL QIDTYDCGLG ENSTTRP00000015317/1-605 YNALSFVWNV NEEAKVFIGI NCLSTDFSSQ KGVKGVPLNL QVDTYDCGSG ENSBTAP00000026370/1-598 YNALSFVWNV HEEAKVFVGV NCLSTDFSSQ KGVKGVPLNL QIDTYDCGSG bmy_04562T0/1-618 YNALSFVWNV NEEAKVFIGI NCLSTDFSSQ KGVKGVPLNL QIDTYDCGSG BACU005782/1-604 YNALSFVWNV NEEAKVFIGI NCLSTDFSSQ KGVKGVPLNL QIDTYDCGSG 401 450 ENSP00000288955/1-626 TERLVHRAVC QIKIFCDKGA ERKMRDDERK QFRRKVKCPD SSNSGVKGCL ENSTTRP00000015317/1-605 TERLLHRAVC QIKIFCDKGA ERKMRDDERK QFRRKVKCPD SSNSGIKGSL ENSBTAP00000026370/1-598 TERLVHRAVC QIKIFCDKGA ERKMRDDERK QFRRKVKCPD SSNSGIKGSL bmy_04562T0/1-618 TERLVHRAVC QIKIFCDKGA ERKMRDDERK QFRRKVKCPD SSNSGVKGSL BACU005782/1-604 TECLVHRAVC QIKIFCDKGA ERKMRDDERK QFRRKVKCPD SSNSGVKGSL 451 500 ENSP00000288955/1-626 LSGFRGNETT YLRPETDLET PPVLFIPNVH FSSLQRSGGA APSAGPSSSN ENSTTRP00000015317/1-605 LSGFRGNETT YLRPEADLET PPVLFIPNVH FSGLQRPGGA VPSAGHGTSN ENSBTAP00000026370/1-598 LAGFRGNETT YLRPEADLET PPVLFIPNVH FSSLQRPGGL ILSK-KNNVD bmy_04562T0/1-618 LSGFRGNETT YLRPEADLET PPVLFIPNVH FSGLQRPGGA VPSAGHGTSN BACU005782/1-604 LSGFRGNETT YLRPEADLET PPVLFIPNVH FSGLQRPGGA VPSAGHGTSN 501 550 ENSP00000288955/1-626 RLPLKRTCSP FTEEFEPLPS KQAKEGDLQR VLLYVRRETE EVFDALMLKT ENSTTRP00000015317/1-605 RL-LKR-CS- VTEEFEPLPS KQDKEDDLQR VLLYVRRETE EVFDALMLKT ENSBTAP00000026370/1-598 ELALKRTCSP FTEEFEPLPS KQAKEDDLQR VLLYVRRETE EVFDALMLKT bmy_04562T0/1-618 RLPLKRTCSP FTEEFEPLPS KQAKEDDLQR VLLYVRRETE EVFDALMLKT BACU005782/1-604 RLPLKRTCSP FTEEFEPLPS KQAKEDDLQR VLLYVRRETE EVFDALMLKT 551 600 ENSP00000288955/1-626 PDLKGLRNAI SEKYGFPEEN IYKVYKKCKR GETSLLHPRL SRHPPPDCLE ENSTTRP00000015317/1-605 PDLKGLRSAI SEKYGFPEEN IYKVYKKCKR GETPGPQSPS PPLPAPRS-- ENSBTAP00000026370/1-598 PDLKGLRSAI SEKYGFPEEN IYKVYKKCKR GILVNMDNNI IRHYSNHV-- bmy_04562T0/1-618 PDLKGLRSAI SEKYGFPEEN IYKVYKKCKR GILVNMDNNI IQHYSNHV-- BACU005782/1-604 PDLKGLRSAI SEKYGFPEEN IYKVYKKCKR GILVNMDNNI IQHYSNHV-- 601 650 ENSP00000288955/1-626 CSHPVTQVRN MGFGDGFWRQ RDLDSNPSPT TVNSLHFTVN SE ENSTTRP00000015317/1-605 ---------- MGFG-----Q VDLNSTLCST T-GESLSPVN SM ENSBTAP00000026370/1-598 -------AFL LDMG------ -ELD------ --GKIQIILK EL bmy_04562T0/1-618 -------AFL LDVG------ -ELD------ --GKIQIILQ EL BACU005782/1-604 -------AFL LDVG------ -ELD------ --GKIQIILQ EL