KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:28:45 2014 Check: 00 .. Name: ENSBTAP00000026372/1-174 Len: 259 Check: 6628 Weight: 1.00 Name: ENSP00000011473/1-259 Len: 259 Check: 6604 Weight: 1.00 Name: ENSTTRP00000002671/1-259 Len: 259 Check: 6545 Weight: 1.00 Name: BACU018670/1-231 Len: 259 Check: 8981 Weight: 1.00 Name: bmy_10583T0/1-241 Len: 259 Check: 6606 Weight: 1.00 // 1 50 ENSBTAP00000026372/1-174 MASNIYLVRQ RISRLGQRMS SFQLNLNPLK EPLGFIKVLE WIASIFAFAT ENSP00000011473/1-259 MAPNIYLVRQ RISRLGQRMS GFQINLNPLK EPLGFIKVLE WIASIFAFAT ENSTTRP00000002671/1-259 MASNIYLVRQ RISRLGQRMS SFQLNLNPLK EPLGFIKVLE WIASIFAFAT BACU018670/1-231 ---------- ------QRMS SFQLNLNPLK EPLGFSKVLE WIASIFAFAT bmy_10583T0/1-241 ---------- --------MS SFQLNLNPLK EPLGFIKVLE WIASIFAFAT 51 100 ENSBTAP00000026372/1-174 CGGFKGKTEI QVSCTTGP-E NKTITAAFGY PFRLNEASFQ APQGGNVCGV ENSP00000011473/1-259 CGGFKGQTEI QVNCPPAVTE NKTVTATFGY PFRLNEASFQ PPPGVNICDV ENSTTRP00000002671/1-259 CGGFKGKTEI QVACLTNKSD NKTITATFGY PFTLNEASFQ TPQGVNVCDV BACU018670/1-231 CGGFKGKTEI QVACHPKVSD NKTITATFGY PFRLNEASFQ APQGVNMCDV bmy_10583T0/1-241 CGGFKGKTEI QVACGSKPSD NKTITATFGY PFRLNEASFQ PPQGVNVCDV 101 150 ENSBTAP00000026372/1-174 DWKNYVLIGD YSSSAQFYVT FAVFVFLYCI AALLLYVGYT NLYRDSRKLT ENSP00000011473/1-259 NWKDYVLIGD YSSSAQFYVT FAVFVFLYCI AALLLYVGYT SLYLDSRKLP ENSTTRP00000002671/1-259 DWKSHVLIGD YSSAAEFYVT FAVFVFLYCI AALLLYVGYT NLYRDSRKLP BACU018670/1-231 DWKNHVLIGD YSSSAQFYVT FAVFVFLYCI ---LLYVGYT NLYRDSRKLP bmy_10583T0/1-241 DWKNYVLIGD YSSSAQFYVT FAVFVFLYCI AALLLYVGYM NLYRDSRKLP 151 200 ENSBTAP00000026372/1-174 MTN------- ---------- ---------- ANG------- --------LC ENSP00000011473/1-259 MIDFVVTLVA TFLWLVSTSA WAKALTDIKI ATGHNIIDEL PPCKKKAVLC ENSTTRP00000002671/1-259 MIDFVVTLVA TFLWLVSTSA WAKALTDIKT ATGRNIVQEL LPCIQQRVIC BACU018670/1-231 MVDFVVTLVA TFLWLVSTSA WAKALTDIKT ATGRNIVQE- --------IC bmy_10583T0/1-241 MVDFVVTLVA TFLWLVSTSA WAKALTDIKT ATGRNIVQEL LPCKRPDVIC 201 250 ENSBTAP00000026372/1-174 NYYCCD---- ---------- ---------F FVVGE----- ------HFSL ENSP00000011473/1-259 YFGSVTSMGS LNVSVIFGFL NMILWGGNAW FVYKETSLHS PSNTSAPHSQ ENSTTRP00000002671/1-259 HFGSVTSMGS LNVSVIFGFL NMILWGGNAW FVYKETSLHS PSNTSTSHSQ BACU018670/1-231 HFGSVTSMGS LNASVIFGFL NMILWGGNAW FVYKETSLRS PSNTSTSHSQ bmy_10583T0/1-241 HFGSVTSMGS LNVSVIFGFL NMILWGGNAW FVYKETSLHS PSNTSTSHSQ 251 300 ENSBTAP00000026372/1-174 G-------- ENSP00000011473/1-259 GGIPPPTGI ENSTTRP00000002671/1-259 GGIPPPTGI BACU018670/1-231 GGIPPPTGI bmy_10583T0/1-241 GGIPPPTGI