KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:28:45 2014 Check: 00 .. Name: ENSP00000356058/1-390 Len: 441 Check: 2327 Weight: 1.00 Name: ENSBTAP00000026376/1-420 Len: 441 Check: 4339 Weight: 1.00 Name: ENSTTRP00000011488/1-392 Len: 441 Check: 6613 Weight: 1.00 Name: bmy_02361T0/1-377 Len: 441 Check: 447 Weight: 1.00 Name: BACU003787/1-410 Len: 441 Check: 7591 Weight: 1.00 // 1 50 ENSP00000356058/1-390 MDFWLWPLYF LPVSGALRIL PEVKVEGELG GSVTIKCPLP EMHVRIYLCR ENSBTAP00000026376/1-420 MDLWLWALYF LPVVGAPKVL PEVKMEGMLG GSITIECPLP ETHVRIYLCR ENSTTRP00000011488/1-392 MDLWLWSLYF LPVAGALRVV PEVKVEGMLG GSVVIECPLP EMHVRIYLCR bmy_02361T0/1-377 MDLWLWSLYF LPVAGALRVL PEVKVEGMLG GSVVIECPLP EMHVRLYLCR BACU003787/1-410 ---------- ---------- -------MLG GSVVIECPLP EMHVRIYLCR 51 100 ENSP00000356058/1-390 EMAGSGTCGT VVSTTNFIKA EYKGRVTLKQ YPRKNLFLVE VTQLTESDSG ENSBTAP00000026376/1-420 TIDESGRCTT VVSSNKYVRE EFKHRVTLEQ CPDRNLFLVV MTELTKNDSG ENSTTRP00000011488/1-392 TIVESGGCAT VVSNRNFVKK EFKNRVTLEL CPDRNLFLVE MTELVESDSG bmy_02361T0/1-377 TIVASGGCAT VVSNRNFVKK EFKHRVTLEL FPESNLFLVE MTELVESDSG BACU003787/1-410 TIVASGGCAT VVSNSNFVKK EFKHRVTLEL FPDRNLFLVE MTELVESDSG 101 150 ENSP00000356058/1-390 VYACGAGMNT DRGKTQKVTL NVHS------ ---------- -EYEPSWEEQ ENSBTAP00000026376/1-420 IYACGVGGNT DRGKTQQITL TVHS------ ---------- -VYEPSWEEE ENSTTRP00000011488/1-392 VYACGAGMDT DRGKTQQVTL SVHS------ ---------- -DYGPFWEEE bmy_02361T0/1-377 VYACGAGMDT DRGKTQQVTL SVHS------ ---------- -DYGPFWEEE BACU003787/1-410 VYACGVGMDT DRGKTQQVTL SVHSGFSLVL ETTNGLLLPP VDYGPFWEEE 151 200 ENSP00000356058/1-390 PMPETPKWF- -----HLPYL FQMPAYASSS KFVTRVTTPA QRGKVPPVHH ENSBTAP00000026376/1-420 PMPEPPAWFN RFLQMHLPPW FQMPAHASSL KFMSKVTTPA QRTKSPRAHQ ENSTTRP00000011488/1-392 PMPEPPAWF- -----RMPLW FQMPEHASSL EFISKVTTPA QRTEAPPAHH bmy_02361T0/1-377 PVPEPPAWFN RFLQMHMPPW FQRPEHASSL EFISKGQFP- ---------- BACU003787/1-410 PVPEPPAWFN RFLQMHMPPW FQMPEHASSL EFISKVTTPA QRTEAPPAHH 201 250 ENSP00000356058/1-390 SSPTTQITHR PRVSRASSVA GDKPRTFLPS TTASKISALE GLLKPQTPSY ENSBTAP00000026376/1-420 ASPKPSVTHR PRVFRASSVA TAEPTIFLPA ITTSKTSAQK GLLRLQTVSY ENSTTRP00000011488/1-392 ASPTTSITHR PRVYRASSAA TAQPTTLLPS ATASKTSAQE ELLRLQTASY bmy_02361T0/1-377 ---------- ---------- ---------- ------KARE ELLRLQTASY BACU003787/1-410 ASPTTSITHR PRVYRASSVA TAQPTTLLPP ARASKTSARE ELLRLQTASY 251 300 ENSP00000356058/1-390 NHHTRLHRQR ALDY--GSQS GREGQGFHIL IPTILGLFLL ALLGLVVKRA ENSBTAP00000026376/1-420 NHQTRLHRQR ASNQGPGAAS GMEDQGVFVL IPTILGLILL ALLGLLAKRI ENSTTRP00000011488/1-392 NHQTRLHRQS SLNQGPGPVS GMEDQGFYIL TPTILGLILL ALLGLVAKRV bmy_02361T0/1-377 NHQSRLHRQR ALNHGPGPVS GMEDQGFYIL TPTILGLILL ALLGLVAKRV BACU003787/1-410 NHQSRLHRQR ALNHGPGPVS GMEDQGFYIL TPTILGLILL ALLGLVAKRV 301 350 ENSP00000356058/1-390 VERRK-ALSR RARRLAVRMR ALES-----S QRPRGSPRPR SQNNIYSACP ENSBTAP00000026376/1-420 IQRRKEALSR RVRRLAVRMR TLDASQRALS RRPRVSRRPR TPSNIYSACP ENSTTRP00000011488/1-392 IQRRK-ALSR RVRRLAVRMR ALEA-----S QRPRVSQRPR TQNNVYSACP bmy_02361T0/1-377 IQRRKEALSR RVRRMAVRMR ALEASQRPLS QRPRVSQRPR TQNNVYSACP BACU003787/1-410 IQRRKEALSR RVRRLAVRMR ALEASQRPLS QRPRVSQRPR TQNNVYSACP 351 400 ENSP00000356058/1-390 RRARGADA-- --AGTGEAPV PGPGAPLPPA PLQVSESPWL HAPSLKTSCE ENSBTAP00000026376/1-420 RRPRGVDA-- --AGGRAASP PVPGAPAASA QPQVPEIPWL HVPSLKIDCE ENSTTRP00000011488/1-392 RRPRGVDA-- --AGEGAAPL PCPGALAPPA PPQVSETPWL HAPSVKISCE bmy_02361T0/1-377 RRPREVDAAG EQAGEGAAPL PGPGASAPPA PPQVSETPWL HAPSVKISCE BACU003787/1-410 RRPRGSDT-- --AGEGAAPL PGPGASAPPA PPQVSETPWL HAPSVNISCE 401 450 ENSP00000356058/1-390 YVSLYHQPAA MMEDSDSDDY INVPA----- ---------- - ENSBTAP00000026376/1-420 YVSFCHQPAA KVEDTDSDDY VNVACLTHLS SCAPEPRPWC Q ENSTTRP00000011488/1-392 YVSFYHQPAA KMEDTHSDDY VNIPA----- ---------- - bmy_02361T0/1-377 YVSFXHQPAA KMEDTDSDDY VNIPCLTQLS SCPPGPRPWC Q BACU003787/1-410 YVSFYHQPAA KMEDTDSDDY VNIPCLTQLS SCPPGPRPWC Q