KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:28:46 2014 Check: 00 .. Name: ENSP00000316491/1-577 Len: 608 Check: 3281 Weight: 1.00 Name: ENSBTAP00000026382/1-539 Len: 608 Check: 6629 Weight: 1.00 Name: ENSTTRP00000011490/1-523 Len: 608 Check: 3874 Weight: 1.00 Name: bmy_02359T0/1-508 Len: 608 Check: 3755 Weight: 1.00 Name: BACU003785/1-566 Len: 608 Check: 4418 Weight: 1.00 // 1 50 ENSP00000316491/1-577 MDGEATVKPG EQKEVVRRGR EVDYSRLIAG TLPQSHVTSR RAGWKMPLFL ENSBTAP00000026382/1-539 MDLESPAKPG DPK------- ---------- ------VTSQ RAGWRMLVFL ENSTTRP00000011490/1-523 MDGESPAKPG EQK------- ---------- ---------- -----LPLWL bmy_02359T0/1-508 ---------- ---------- ---------- ---------- -----MRILL BACU003785/1-566 MENCSEIQTR KPEQLSLG-- ---------- --IGFDVTSQ RAGWKVPILL 51 100 ENSP00000316491/1-577 ----ILCLLQ GSSFALPQKR --PHPRWLWE GSLPSRTHLR AMGTLRPSSP ENSBTAP00000026382/1-539 ----LMCLLQ VPTVVPAHRR --PHLRWLQA GSLLAGPHRW AEGAPRPFS- ENSTTRP00000011490/1-523 EGPSPPC-AP GSALAPPHGR --PRLRWLWD GSLPSGPTLW ATETLPVFSP bmy_02359T0/1-508 ----ILCLLQ GESQTAQLQS LYTQTQAFQA ADMPGG-HLN GIQHPHRSSG BACU003785/1-566 ----ILCLLQ GESQTAQLQS LYTQTRAFQA ADMPGG-HLS GIQHPHRSSG 101 150 ENSP00000316491/1-577 LC-------- --WREESSFA APNSLKGSRL VSGEPGGAVT IQCHYAPSSV ENSBTAP00000026382/1-539 ---------- --CCLGPLIA A-SALTGPRL VSGEPGGAVT IQCRYPSLAI ENSTTRP00000011490/1-523 LC-------- --WREESIPA A-NALRGPRL VSGEPGGAVT IRCHYPPLPI bmy_02359T0/1-508 ICMALDRGSG QIWVRGNEGA A-NALKGPRL VSGEPGGAVT IQCHYPPFSI BACU003785/1-566 IRMALDRGSG QIWVRGNEGA A-NALKGPRL VSGEPGGAVT IQCHYPPFSI 151 200 ENSP00000316491/1-577 NRHQRKYWCR LGPPRWICQT IVSTNQYTHH RYRDRVALTD FPQRGLFVVR ENSBTAP00000026382/1-539 NSHLRKYWCR LGPPAGVCRT VVSTNRYTHL RYRGRVALAD FPKRGLFVVR ENSTTRP00000011490/1-523 NSHQRKYWCR LRPLTWVCHT IVSTNRYTHL RYRGRVALTD FPQRGLFVVR bmy_02359T0/1-508 NSHPRKYWCR LSPXTWVCHT IVSTNRYTHI RYRGRVVLRD FPQRGLFVVR BACU003785/1-566 NSHPRKYWCR LSPLTWACHT IVSTNRYTHR RYRGRVVLRD FPQRGLFVVR 201 250 ENSP00000316491/1-577 LSQLSPDDIG CYLCGIGSEN NMLFLSMNLT ISAGPASTLP TATPAAGELT ENSBTAP00000026382/1-539 LSRLSPEDEG RYRCGLGNSN NALFFSMNLT VSPGLSRTIP TATLDYGELI ENSTTRP00000011490/1-523 LSQLSPEDVG HYRCGIGNAN NMLFFSMNLT ISAGLSRAVP TATVAAGELI bmy_02359T0/1-508 LSQLSPEDVG HYRCGIGNTN NMLFFSMKLT ISAGLSRTIP AATLAAGELI BACU003785/1-566 LSQLSPEDVG HYRCGIGNAN NMLFFSMNLT ISAGLSRTIP AATLAAGELI 251 300 ENSP00000316491/1-577 MRSY-GTASP VANRWTPGTT QTLG-QGTAW DTVASTPGTS KTTASAEGRR ENSBTAP00000026382/1-539 TGSFEITSPP ATKRCTRGNT QTTGRQRTGW DTVALTPGAR KTTASATGRQ ENSTTRP00000011490/1-523 TGSF-VTVSS AANRRTPGTM QTIERQGTGW DRVALTLGTS KTTASAKGRE bmy_02359T0/1-508 TGSF-VTVSP AANRRTPGTI QAIERQGTGW DRVALTLGTS KTTASAKGRQ BACU003785/1-566 TGSF-VTVSP VANRRTPGTI QTIEKQGTGW DRVALTLGTS KTTASAKGRQ 301 350 ENSP00000316491/1-577 TPGATRPAAP GTGSWAEGSV KAPAPIPESP PSKSRSMSNT TEG--VWEGT ENSBTAP00000026382/1-539 TPGATAVVAP GTGSQVEGSV WATVPTVQSP ASTVRGMTGA TERGLVW-ST ENSTTRP00000011490/1-523 TPGATGVVAP GTGSQLEGSI WATIPTPQSP ASAIRGVSNT TEGDRVW-ST bmy_02359T0/1-508 TPGATGVVAP GTGSQLEGSI WATIPTPQSP ASAIRGVSNP TEGDRVW-ST BACU003785/1-566 TPGATGVVAP GTGSQLEGSI WATIPTPQSP ASAIRGASNT TEGDREW-ST 351 400 ENSP00000316491/1-577 RSSVTNRARA SKDRREMTTT KADRPREDIE GVRIALDAAK KVLGTIGPPA ENSBTAP00000026382/1-539 SNSEATRARA SERERE-TTP GVNRPSEETD SVSATPGTTE TAAGTIRPST ENSTTRP00000011490/1-523 RSLEANRTRA SERERE-TTT GTDRQREETE RVRTVPDTAE KVMATIRPST bmy_02359T0/1-508 RSLEANRARA SERERE-TTT GTDRQREDTE RVRIAPDTAE KVMATIRPST BACU003785/1-566 RSLEANRARA SERERE-TTT GTDRQREDTE RVRIAPDTAE KVMATIRPST 401 450 ENSP00000316491/1-577 LVSETLAWEI LPQATPVSKQ QSQGSIGETT PAAGMWTLGT PAADVWILGT ENSBTAP00000026382/1-539 LASERWMWEP LQEETSASEP QSLGSIEGTI PAAAVWTSEP ---------- ENSTTRP00000011490/1-523 LVSDKWMWET HQEEMSVSKP QALGSVEGTP PVAVVWTLEP ---------- bmy_02359T0/1-508 LVSEKWMWET LQEEMSVSKP QALRSIEGTT PVAVVWTLEP ---------- BACU003785/1-566 LVSEKWMWET LQEEMSVSKP QALRSIEGTN PVAAVWTLEP ---------- 451 500 ENSP00000316491/1-577 PAADVWTSME AASGEGSAAG DLDAATGDRG PQATLSQTPA VGPWGPPGKE ENSBTAP00000026382/1-539 ------TLIE MASAEGSSEG DLDTPAGDGG PRVMPSQALA GGPPGLPTEE ENSTTRP00000011490/1-523 ------TSIE MASAEGSSEG DLDTPAGDSG PQVTSSQALA ARPFRPLGKD bmy_02359T0/1-508 ------TSLE MASAEGSSEG DLDTSAGDSG PQVTPSQALA ARPLRPLGKD BACU003785/1-566 ------TSIE MASAEGSSEG DLDTPAGDSG PQVTPSQALA ARPLRPLGKD 501 550 ENSP00000316491/1-577 SSVKRTFPED ESSSRTL--- APVSTMLALF MLMALVLLQR KLWRRRTSQE ENSBTAP00000026382/1-539 SSVKSISLEE KNFSGIL--- TPVSSVLCLL MLVTLVLWKR KLQRKGSSQK ENSTTRP00000011490/1-523 SQVKRTPGPG LNIPKGIKFS AQAHSVLCVC ---------- ------AAQE bmy_02359T0/1-508 SHVKSA---- ---------- QDAHSVLCVC ---------- ------AAQE BACU003785/1-566 SHVKSASLEE KNISRML--- TPVSSVLCPL MLTALVLLRR KLRRKKSSQE 551 600 ENSP00000316491/1-577 AER---VTLI QMTHFLEVNP QADQLPHVER KMLQDDSLPA GASLTAPERN ENSBTAP00000026382/1-539 TGRSSGVTLI QMTQFPELGL QPGQPPPVGR KRLQVDPPPL HASLSLPARD ENSTTRP00000011490/1-523 TERSSGVTLI QMTQFPELSL QPDQLPQVER KVLQDDSPPL RASLSIPERD bmy_02359T0/1-508 TERSSGVTLI QMTPFPELSL QPDQLPQVER EMLQDDPPPL RASLSTPERD BACU003785/1-566 TERSSGVTLI QMTPFPELSL QPDQLPQVER EMLQDDPPPL RASLSIPERD 601 650 ENSP00000316491/1-577 PGP----- ENSBTAP00000026382/1-539 PGP----- ENSTTRP00000011490/1-523 PGPQ---- bmy_02359T0/1-508 PGPRGMEG BACU003785/1-566 PGPRGMEG