KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:28:47 2014 Check: 00 .. Name: ENSP00000262316/1-855 Len: 1017 Check: 1119 Weight: 1.00 Name: ENSBTAP00000026388/1-856 Len: 1017 Check: 611 Weight: 1.00 Name: ENSTTRP00000011437/1-856 Len: 1017 Check: 58 Weight: 1.00 Name: bmy_01852T0/1-943 Len: 1017 Check: 4550 Weight: 1.00 Name: BACU009271/1-900 Len: 1017 Check: 2410 Weight: 1.00 // 1 50 ENSP00000262316/1-855 MSEARRDSTS SLQRKKPPWL KLDIPSAVPL TAEEPSFL-- ---------- ENSBTAP00000026388/1-856 MGEARRDSSS SLQHKKPPWL KLDIPAVVPP AAEEPSFL-- ---------- ENSTTRP00000011437/1-856 MGEARRDSTS SLQRKKPPWL KLDIPAVVPP AAEESSFL-- ---------- bmy_01852T0/1-943 ---------- ---------- ---------- ---------- ---------- BACU009271/1-900 MGEARRDSTS SLQRKKPPWL KLDIPAVVPP AAEESNFLQV GPGQRGLQVQ 51 100 ENSP00000262316/1-855 ---------- -QPLRRQAFL RSVSMPAETA HISSPHHELR RPVLQRQTSI ENSBTAP00000026388/1-856 ---------- -QPLRRQAFL RSVSMPAEPA RVPSPHQEPR RPVLQRQMSI ENSTTRP00000011437/1-856 ---------- -QPLRRQAFL RSVSMPAEPT RVPSPHQEPR RPALQRQMSI bmy_01852T0/1-943 ---------- ---------- ----MPAEPA RVPSPHQEPR RPGLQRQMSI BACU009271/1-900 PIQPPHWVPV AQPLRRQAFL RSVSMPAEPA RVPSPHQEPR RLGLQRQMSI 101 150 ENSP00000262316/1-855 TQTIR----- ---------- ---------- ---------- RGTADWFGVS ENSBTAP00000026388/1-856 TQTIR----- ---------- ---------- ---------- RGTADWFGVS ENSTTRP00000011437/1-856 TQTIR----- ---------- ---------- ---------- RGTADWFGVS bmy_01852T0/1-943 TQTIRSRQVR FGRVHTLPLL GPPAARRALT QRSSLSRSLL RGTADWFGVS BACU009271/1-900 TQTIRSRQVR FGRVHTLPLL GPPAARRALT QRSSLSRSLL RGTADWFGVS 151 200 ENSP00000262316/1-855 KDSDSTQKWQ RKSIRHCSQR YGKLKPQVLR ELDLPSQDNV SLTSTETPPP ENSBTAP00000026388/1-856 KDSDSTQKWQ RKSIRHCSQR YGKLKPQVIR ELDLPSQDNV SLTSTETPPP ENSTTRP00000011437/1-856 KDSDSTQKWQ RKSIRHCSQR YGKLKPQVIR ELDLPSQDNV SLTSTETPPP bmy_01852T0/1-943 KDSDSTQKWQ RKSIRHCSQR YGKLKPQVIR ELDLPSQDNV SLTSTETPPP BACU009271/1-900 KDSDSTQKWQ RKSIRHCSQR YGKLKPQVIR ELDLPSQDNV SLTSTETPPP 201 250 ENSP00000262316/1-855 LYVGPCQLGM QKIIDPLARG RAFRVADDTA EGLSAPHTPV TPGAASLCSF ENSBTAP00000026388/1-856 LYVGPCQLGM QKIVDPLARG RAFRLADDAA DGPSAPHTPV TPGAASLCSF ENSTTRP00000011437/1-856 LYVGPCQLGM QKIIDPLARG RAFRLADDAA DGLSAPHTPV TPGAASLCSF bmy_01852T0/1-943 LYVGPCQLGM QKIIDPLARG RAFRLADDAA DGLSAPHTPV TPGAASLCSF BACU009271/1-900 LYVGPCQLGM QKIIDPLARG RAFRLADDAA DGLSAPHTPV TPGAASLCSF 251 300 ENSP00000262316/1-855 SSSRSGFHRL PRRRKRESVA KMSFRAAAAL MKGRSVRDGT FRRAQRRSFT ENSBTAP00000026388/1-856 SSSRSGFNRL PRRRKRESVA KMSFRAAAAL VKGRSVRDGT LRRAQRRSFT ENSTTRP00000011437/1-856 SSSRSGFNRL PRRRKRESVA KMSFRAAAAL VKGRSVRDGT LRRVQRRSFT bmy_01852T0/1-943 SSSRSGFNRL PRRRKRESVA KMSFRAAAAL VKGRSVRDGT LRRLQRRSFT BACU009271/1-900 SSSRSGFNRL PRRRKRESVA KMSFRAAAAL VKGRSVRDGT LRRLQRRSFT 301 350 ENSP00000262316/1-855 PASFLEEDTT DFPDELDTSF FAREGILHEE LSTYPDEVFE SPSEAALKDW ENSBTAP00000026388/1-856 PASFLEEDTA DFPDELDTSF FAREGVLHEE LSTYPDEVFE SPSEAALKDW ENSTTRP00000011437/1-856 PASFLEEDTA DFPDELDTSF FAREGVLHEE LSTYPDEVFE SPSEAALKDW bmy_01852T0/1-943 PASFLEEDTA DFPDELDTSF FAREGVLHEE LSTYPDEVFE SPSEAALKDW BACU009271/1-900 PASFLEEDTA DFPDELDTSF FAREGVLHEE LSTYPDEVFE SPSEAALKDW 351 400 ENSP00000262316/1-855 EKAPEQADLT GGALDRSELE RSHLMLPLER GWRKQKE-GA AAPQPKVRLR ENSBTAP00000026388/1-856 ERAPEQVDLT GGALDRSELE RSHLMLPLER GWRKQKEGGA AAPQPKVRLR ENSTTRP00000011437/1-856 ERAPEQADLT GGALDRSELE RSHLMLPLER GWRKQKEGGA AAPQPKVRLR bmy_01852T0/1-943 ERAPEQADLT GGALARSELE RSHLMLPLER GWRKQKEGGA AAPQPKVRLR BACU009271/1-900 ERAPEQADLT GGALARSELE RSHLMLPLER GWRKQKEGGA AAPQPKVRLR 401 450 ENSP00000262316/1-855 QEVVSTAGPR RGQRIAVPVR KLFAREKRPY GLGMVGRLTN RTYRKRIDSF ENSBTAP00000026388/1-856 QEVVSTAGQR RGQRIAMPVR KLFAREKRPY GLGMVGRLTN RTYRKRIDSY ENSTTRP00000011437/1-856 QEVVSAAGQR RGQRIAMPVR KFFAREKRPY GLGMVGRLTN RTYRKRIDSY bmy_01852T0/1-943 QEVVSAAGQR RGQRIAMPVR KFFAREKRPY GLGMVGRLTN RTYRKRIDSY BACU009271/1-900 QEVVSAAGQR RGQRIAMPVR KFFAREKRPY GLGMVGRLTN RTYRKRIDSY 451 500 ENSP00000262316/1-855 VKRQIEDMDD HRPFFTYWLT FVHSLVTILA VCIYGIAPVG FSQHETVDSV ENSBTAP00000026388/1-856 VKRQIEDMDD HRPFFTYWLT FVHSLVTILA VCIYGVAPVG FSQHETVDSV ENSTTRP00000011437/1-856 VKRQIEDMDD HRPFFTYWLT FVHSLVTILA VCIYGVAPVG FSQHETVDSV bmy_01852T0/1-943 VKRQIEDMDD HRPFFTYWLT FVHSLVTILA VCIYGVAPVG FSQHETVDSV BACU009271/1-900 VKRQIEDMDD HRPFFTYWLT FVHSLVTILA VCIYGVAPVG FSQHETVD-- 501 550 ENSP00000262316/1-855 LRNRGVYENV KYVQQENFWI GPSSEALIHL GAKFSPCMRQ DPQVHSFIRS ENSBTAP00000026388/1-856 LRNRGVYENV KYVQQENFWI GPSSEALIHL GAKFSPCMRQ DPQVHSFIHA ENSTTRP00000011437/1-856 LRNRGVYENV KYVQQENFWI GPSSEALIHL GAKFSPCMRQ DPQVHSFIHA bmy_01852T0/1-943 LRNRGVYENV KYVQQENFWI GPSSEALIHL GAKFSPCMRQ DPQVHSFIHA BACU009271/1-900 ---------- ---------- ---SEALIHL GAKFSPCMRQ DPQVHSFIHA 551 600 ENSP00000262316/1-855 AREREKHSAC CVRNDRSGCV QTSEEECSST LAVWVKWPIH PSAPELAGHK ENSBTAP00000026388/1-856 AREREKHSAC CVRNDRSGCV QTSEEECSST LAVWVKWPLH PSAPDLAGQK ENSTTRP00000011437/1-856 AREREKHSAC CVRNDRSGCV QTSEEECSST LAVWVKWPFH PSAPDLADHK bmy_01852T0/1-943 AREREKHSAC CVRNDRSGCV QTSEEECSST LAVWVKWPFH PSAPDLAGHK BACU009271/1-900 AREREKHSAC CVRNDRSGCV QTSEEECSST LAVWVKWPFH PSAPDLAGHK 601 650 ENSP00000262316/1-855 RQFGSVCHQD PRVCDEPSSE DPHEWPEDIT KWPICTKNSA GNHTNHPHMD ENSBTAP00000026388/1-856 RRYGSVCHQD PRVCDEPSSE DPHEWPDDIT KWPICTKSSA GNHTNHPHMD ENSTTRP00000011437/1-856 RHFGSVCHQD PRVCDEPSSE DPHEWPDDIT KWPICTKNSA GNYTNHPHMD bmy_01852T0/1-943 RQFGSVCHQD PRVCDEPSSE DPHEWPDDIT KWPICTKNSA GNHTNHPHMD BACU009271/1-900 RQFGSVCHQD PRVCDEPSSE DPHEWPDDIT KWPICTKNSA GNHTNHPHMD 651 700 ENSP00000262316/1-855 CVITGRPCCI GTKGRCEITS REYCDFMRGY FHEEATLCS- ---------- ENSBTAP00000026388/1-856 CVITGRPCCI GTKGRCEITS REYCDFMRGY FHEEATLCS- ---------- ENSTTRP00000011437/1-856 CVITGRPCCI GTKGRCEITS REYCDFMRGY FHEEATLCS- ---------- bmy_01852T0/1-943 CVITGRPCCI GTKGRCEITS REYCDFMRGY FHEEATLCSQ VGLRGEGPSP BACU009271/1-900 CVITGRPCCI GTKGRCEITS REYCDFMRGY FHEEATLCS- ---------- 701 750 ENSP00000262316/1-855 ---------- ---QVHCMDD VCGLLPFLNP EVPDQFYRLW LSLFLHA--- ENSBTAP00000026388/1-856 ---------- ---QVHCMDD VCGLLPFLNP EVPDQFYRLW LSLFLHA--- ENSTTRP00000011437/1-856 ---------- ---QVHCMDD VCGLLPFLNP EVPDQFYRLW LSLFLHA--- bmy_01852T0/1-943 SPQPRRVLTG HSAQVHCMDD VCGLLPFLNP EVPDQFYRLW LSLFLHAGQV BACU009271/1-900 ---------- ---QVHCMDD VCGLLPFLNP EVPDQFYRLW LSLFLHAGQV 751 800 ENSP00000262316/1-855 --------GI LHCLVSICFQ MTVLRDLEKL AGWHRIAIIY LLSGVTGNLA ENSBTAP00000026388/1-856 --------GV LHCLVSVCFQ MTVLRDLEKL AGWHRIAIIY LLSGVTGNLA ENSTTRP00000011437/1-856 --------GI LHCLVSVCFQ MTVLRDLEKL AGWHRIAIIY LLSGITGNLA bmy_01852T0/1-943 TPCGLSGVGI LHCLVSVCFQ MTVLRDLEKL AGWHRIAIIY LLSGVTGNLA BACU009271/1-900 TPCGLSGVGI LHCLVSVCFQ MTVLRDLEKL AGWHRIAIIY LLSGVTGNLA 801 850 ENSP00000262316/1-855 SAIFLPYRAE ---------- ---------- ---------- ---------- ENSBTAP00000026388/1-856 SAIFLPYRAE ---------- ---------- ---------- ---------- ENSTTRP00000011437/1-856 SAIFLPYRAE ---------- ---------- ---------- ---------- bmy_01852T0/1-943 SAIFLPYRAE VRLPPKVGPS YVHLLPSTNW FQHRVELLQC PAREQLHLAP BACU009271/1-900 SAIFLPYRAE ---------- ---------- ---------- ---------- 851 900 ENSP00000262316/1-855 ---------- ---------- --------VG PAGSQFGILA CLFVELFQSW ENSBTAP00000026388/1-856 ---------- ---------- --------VG PAGSQFGILA CLFVELFQSW ENSTTRP00000011437/1-856 ---------- ---------- --------VG PAGSQFGILA CLFVELFQSW bmy_01852T0/1-943 VPIRSGRREV GRGDLLRPTS SRAPTRPQVG PAGSQFGILA CLFVELFQSW BACU009271/1-900 ---------- ---------- --------VG PAGSQFGILA CLFVELFQSW 901 950 ENSP00000262316/1-855 QILARPWRAF FKLLAVVLFL FTFGLLPWID NFAHISGFIS GLFLSFAFLP ENSBTAP00000026388/1-856 QILARPWRAF FKLLAVVLFL FTFGLLPWID NFAHISGFIS GLFLSFAFLP ENSTTRP00000011437/1-856 QVLARPWRAF FKLLAVVLFL FTFGLLPWID NFAHISGFVS GLFLSFAFLP bmy_01852T0/1-943 QILARPWRAF FKLLAVVLFL FTFGLLPWID NFAHISGFVS GLFLSFAFLP BACU009271/1-900 QILARPWRAF FKLLAVVLFL FTFGLLPWID NFAHISGFVS GLFLSFAFLP 951 1000 ENSP00000262316/1-855 YISFGKFDLY RKRCQIIIFQ VVFLGLLAGL VVLFYVYPVR CEWCEFLTCI ENSBTAP00000026388/1-856 YISFGKFDLY RKRCQIIVFQ LVFLGLLAGL VVLFYFYPVR CEWCEFLTCI ENSTTRP00000011437/1-856 YISFGKFDLY RKRCQIIIFQ VVFLGLLAGL VVLFYFYPVR CEWCEFLTCI bmy_01852T0/1-943 YISFGKFDLY RKRCQIIIFQ VVFLGLLAGL VVLFYFYPVR CEWCEFLTCI BACU009271/1-900 YISFGKFDLY RKRCQIIIFQ VVFLGLLAGL VVLFYFYPVR CEWCEFLTCI 1001 1050 ENSP00000262316/1-855 PFTDKFCEKY ELDAQLH ENSBTAP00000026388/1-856 PFTDKFCEKY ELDAQLH ENSTTRP00000011437/1-856 PFTDKFCEKY ELDAQLH bmy_01852T0/1-943 PFTDKFCEKY ELDAQLH BACU009271/1-900 PFTDKFCEKY ELDAQLH