KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 17:28:48 2014 Check: 00 ..
Name: bmy_17545T0/1-127 Len: 128 Check: 8515 Weight: 1.00
Name: ENSP00000312272/1-119 Len: 128 Check: 2755 Weight: 1.00
Name: ENSTTRP00000016303/1-119 Len: 128 Check: 2755 Weight: 1.00
Name: ENSBTAP00000026389/1-119 Len: 128 Check: 2755 Weight: 1.00
Name: BACU014002/1-101 Len: 128 Check: 3157 Weight: 1.00
//
1 50
bmy_17545T0/1-127 MPSCDPGPAP ACLPTKTFRS YLPRCHRTYS CVHCRAHLAK HDELISKSFQ
ENSP00000312272/1-119 --------MV KMTRSKTFQA YLPSCHRTYS CIHCRAHLAN HDELISKSFQ
ENSTTRP00000016303/1-119 --------MV KMTRSKTFQA YLPSCHRTYS CIHCRAHLAN HDELISKSFQ
ENSBTAP00000026389/1-119 --------MV KMTRSKTFQA YLPSCHRTYS CIHCRAHLAN HDELISKSFQ
BACU014002/1-101 --------MV KMTRSKTFQA YLPSCHRTYS CIHCRAHLAN HDELISKAPE
51 100
bmy_17545T0/1-127 GSH-GRAYLF NSVVNVGCGP AEQRLLLTGL HSVADIFCES CKTTLGWKYE
ENSP00000312272/1-119 GSQ-GRAYLF NSVVNVGCGP AEERVLLTGL HAVADIYCEN CKTTLGWKYE
ENSTTRP00000016303/1-119 GSQ-GRAYLF NSVVNVGCGP AEERVLLTGL HAVADIYCEN CKTTLGWKYE
ENSBTAP00000026389/1-119 GSQ-GRAYLF NSVVNVGCGP AEERVLLTGL HAVADIYCEN CKTTLGWKYE
BACU014002/1-101 KAQEGR---- ---VNVGCGP AEERVLLTGL HAVADIYCEN CKTTLGWKYV
101 150
bmy_17545T0/1-127 QAFETSQKYK EGKYIIEMSH MVKDNGWD
ENSP00000312272/1-119 HAFESSQKYK EGKYIIELAH MIKDNGWD
ENSTTRP00000016303/1-119 HAFESSQKYK EGKYIIELAH MIKDNGWD
ENSBTAP00000026389/1-119 HAFESSQKYK EGKYIIELAH MIKDNGWD
BACU014002/1-101 ST-KESDWWR EGR------- ----EGTG