KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:28:53 2014 Check: 00 .. Name: ENSP00000356520/1-1270 Len: 1312 Check: 6214 Weight: 1.00 Name: ENSBTAP00000026409/1-1287 Len: 1312 Check: 3690 Weight: 1.00 Name: ENSTTRP00000007251/1-1153 Len: 1312 Check: 5608 Weight: 1.00 Name: bmy_10502T0/1-1242 Len: 1312 Check: 998 Weight: 1.00 Name: BACU005801/1-1218 Len: 1312 Check: 3209 Weight: 1.00 // 1 50 ENSP00000356520/1-1270 MGDVKNFLYA WCGKRKMTPS YEIRAVGNKN RQKFMCEVQV EGYNYTGMGN ENSBTAP00000026409/1-1287 MGDVKNFLYA WCGKRKMTPS YEIRAVGNKN RQKFMCEVRV EGYNYTGMGN ENSTTRP00000007251/1-1153 MGDVKNFLYA WCGKRKMTPT YEIRAVGNKN RQKFMCEVRV EGYNYTGMGN bmy_10502T0/1-1242 ---------- ---------- --------MN RLR----VRV EGYNYTGMGN BACU005801/1-1218 ---------- ---------- --------MN RLR----VRV EGYNYTGMGN 51 100 ENSP00000356520/1-1270 STNKKDAQSN AARDFVNYLV RINEIKSEEV PAFGVASP-P PLTDTPDTTA ENSBTAP00000026409/1-1287 STNKKDAQSN AARDFVNYLV RINELKSEEV PAIGVAPPTP SATDSSDTTA ENSTTRP00000007251/1-1153 STNKKDAQSN AARDFVNYLV RINEVKSEEV PAIGVAPPPP PITDAPDSTA bmy_10502T0/1-1242 STNKKDAQSN AARDFVNYLV RINEVKSEEV PAIGVAPPRP PITDAPDSTA BACU005801/1-1218 STNKKDAQSN AARDFVNYLV RINEVKSEEV PAIGVAPPRP PATDAPDSTA 101 150 ENSP00000356520/1-1270 NAEGDLPTTM GGPLPPHLAL KA-------- ---------- ENNSEVGASG ENSBTAP00000026409/1-1287 EDGG-VPGNL GGPLPPHLTL QA-------- ---------- ENNSGGGGSG ENSTTRP00000007251/1-1153 DTGGGLPTTM GGPLPPHLAL KT-------- ---------- ENNSGIGASG bmy_10502T0/1-1242 DTGEGLPTAV GGPL-PHLAL KAGSSYSLIY QGNNHFLPVI ENNSGIGASG BACU005801/1-1218 DTGE------ GGPL-PHLAL KA-------- ---------- ENNSGIGASG 151 200 ENSP00000356520/1-1270 YGVPGPTWDR GANLKDYYSR KEEQEVQATL ESEEVDLNAG LHGNWTLENA ENSBTAP00000026409/1-1287 Y---VPTWDR GANLKDYYSR KEEQEVQATL ESEEVDLNAG LHGNWTLENA ENSTTRP00000007251/1-1153 YGAPGPTWDR GANLKDYYSR KEEQEVQATL ESEEVDLNAG LHGNWTLENA bmy_10502T0/1-1242 YGAPGPTWDR GANLKDYYSR KEEQEVQATL ESEEVDLNAG LHGNWTLENA BACU005801/1-1218 YGAPGPTWDR GANLKDYYSR KEEQEVQATL ESEEVDLNAG LHGNWTLENA 201 250 ENSP00000356520/1-1270 KARLNQYFQK EKIQGEYKYT QVGPDHNRSF IAEMTIYIKQ LGRRIFAREH ENSBTAP00000026409/1-1287 KARLNQYFQK EKIQGEYKYT QVGPDHNRSF IAEMTIYIKQ IGRRIFAREH ENSTTRP00000007251/1-1153 KARLNQYFQK EKIQGEYKYT QVGPDHNRSF IAEMTIYIKQ LGRRIFAREH bmy_10502T0/1-1242 KARLNQYFQK EKIQGEYKYT QVGPDHNRSF IAEMTIYIKQ LGRRIFAREH BACU005801/1-1218 KARLNQYFQK EKIQGEYKYT QVGPDHNRSF IAEMTIYIKQ LGRRIFAREH 251 300 ENSP00000356520/1-1270 GSNKKLAAQS CALSLVRQLY HLGVVEAYSG LTKKKEGETV EPYKVNLSQD ENSBTAP00000026409/1-1287 GSNKKLAAQS CALSLVRQLY HLGVIEPYSG LTKKKEGETV EPYKVNLSQD ENSTTRP00000007251/1-1153 GSNKKLAAQS CALSLVRQLY HLGVIEAYSG LTKKKEGETV EPYKVNLSQD bmy_10502T0/1-1242 GSNKKLAAQS CALSLVRQLY HLGVIEAYSG LTKKKEGETV EPYKVNLSPD BACU005801/1-1218 GSNKKLAAQS CALSLVRQLY HLGVIEAYSG LTKKKEGETV EPYKVNLSQD 301 350 ENSP00000356520/1-1270 LEHQLQNIIQ ELNLEILPPP EDPSVPVALN IGKLAQFEPS QRQNQVGVVP ENSBTAP00000026409/1-1287 LEHQLQNIVQ ELNLEIVPIP EDPSVPVALN LGKLAQFEPS QRQNPVGVVP ENSTTRP00000007251/1-1153 LEHQLQNIIQ ELNLEIVPLP DDPSVPVVLN LGKLAHFEPS QRQNQVGVVP bmy_10502T0/1-1242 LEHQLQNIIQ ELNLEIVPLP DDPSVPVVLN LGKLAHFEPS QRQNQVGVVP BACU005801/1-1218 LEHQLQNIIQ ELNLEIVPLP DDPSVPVVLN LGKLAHFEPS QRQNQVGVVP 351 400 ENSP00000356520/1-1270 WSPPQSNWNP WTSSNIDEGP LAFATPEQIS MDLKNELMYQ LEQDHDLQAI ENSBTAP00000026409/1-1287 WSPPQSNWNP WTSSNIDEGP LAYATPEQIS MDLKNELMYQ LEQDRDLQAV ENSTTRP00000007251/1-1153 WSPPQSNWNP WTSSNIDEGP LAYATPEQIS MDLKSELMYQ LEQDHDLQAI bmy_10502T0/1-1242 WSPPQSNWNP WTSSNIDEGP LAYATPEQIS MDLKSELMYQ LEQDHDLQAI BACU005801/1-1218 WSPPQSNWNP WTSSNIDEGP LAYATPEQIS MDLKSELMYQ LEQDHDLQAI 401 450 ENSP00000356520/1-1270 LQERELLPVK KFESEILEAI SQNSVVIIRG ATGCGKTTQV PQFILDDFIQ ENSBTAP00000026409/1-1287 LQERELLPVK KFESEILEAI SQNPVVIIRG ATGCGKTTQV PQFILDDCIQ ENSTTRP00000007251/1-1153 LQERELLPVK KFESEILEEI SQNPVVIIRG ATGCGKTTQV PQFILDDFIQ bmy_10502T0/1-1242 LQERELLPVK KFESEILEAI SQNPVVIIRG ATGCGKTTQV PQFILDDFIQ BACU005801/1-1218 LQERELLPVK KFESEILEAI SQNPVVIIRG ATGCGKTTQV PQFILDDFIQ 451 500 ENSP00000356520/1-1270 NDRAAECNIV VTQPRRISAV SVAERVAFER GEEPGKSCGY SVRFESILPR ENSBTAP00000026409/1-1287 NDRAAECNIV VTQPRRISAV SVAERVAYER GEEPGKSCGY SVRFESILPR ENSTTRP00000007251/1-1153 NDRAAECNIV VTQPRRISAV SVAERVAYER GEEPGKSCGY SVRFESILPR bmy_10502T0/1-1242 NDRAAGCNIV VTQPRRISAV SVAERVAYER GEEPGKSCGY SVRFESVLPR BACU005801/1-1218 NDRAAGCNIV VTQPRRISAV SVAERVAYER GEEPGKSCGY SVRFESVLPR 501 550 ENSP00000356520/1-1270 PHASIMFCTV GVLLRKLEAG IRGISHVIVD EIHERDINTD FLLVVLRDVV ENSBTAP00000026409/1-1287 PHASIMFCTV GVLLRKLEAG IRGISHVIVD EIHERDINTD FLLVVLRDVV ENSTTRP00000007251/1-1153 PHASIMFCTV GVLLRKLEAG IRGISHVIVD EIHERDINTD FLLVVLRDVV bmy_10502T0/1-1242 PHASIMFCTV GVLLRKLEAG IRGISHVIVD EIHERDINTD FLLVVLRDVV BACU005801/1-1218 PHASIMFCTV GVLLRKLEAG IRGISHVIVD EIHERDINTD FLLVVLRDVV 551 600 ENSP00000356520/1-1270 QAYPEVRIVL MSATIDTSMF CEYFFNCPII EVYGRTYPVQ EYFLEDCIQM ENSBTAP00000026409/1-1287 QAYPEVRIVL MSATIDTSMF CEYFFNCPII EVYGRTFPVQ EYFLEDCIQM ENSTTRP00000007251/1-1153 QAYPEVRIVL MSATIDTSMF CEYFFSCPII EVYGRTYPVQ EYFLEDCIQM bmy_10502T0/1-1242 QAYPEVRIVL MSATIDTSMF CEYFFSCPII EVYGRTYPVQ EYFLEDCIQM BACU005801/1-1218 QAYPEVRIVL MSATIDTSMF CEYFFSCPII EVYGRTYPVQ EYFLEDCIQM 601 650 ENSP00000356520/1-1270 THFVPPPKDK KKKDKDDDGG EDDDANCNLI CGDEYGPETR LSMSQLNEKE ENSBTAP00000026409/1-1287 THFVPPPKDK KKKDKDDDGG EDDDANCNLI CGDEYGAETR ISMAQLNEKE ENSTTRP00000007251/1-1153 THFIPPPKDK KKKDKDDDSG EDDDANCNLI CGDEYGPETK MSMAQLNEKE bmy_10502T0/1-1242 THFVPPPKDK KKKDKDDDSG EDDDANCNLI CGDEYGPETK MSMAQLNEKE BACU005801/1-1218 THFVPPPKDK KKKDKDDDSG EDDDANCNLI CGDEYGPETK VSMAQLNEKE 651 700 ENSP00000356520/1-1270 TPFELIEALL KYIETLNVPG AVLVFLPGWN LIYTMQKHLE MNPHFGSHRY ENSBTAP00000026409/1-1287 TPFELIEALL LYIETLNVPG AVLVFLPGWN LIYTMQKHLE MNPHFGSHRY ENSTTRP00000007251/1-1153 TPFELIEALL KYIETLNVPG AVLVFLPGWN LIYTMQKHLE MNPHFGSHRY bmy_10502T0/1-1242 TPFELIEALL KYIETLNVPG AVLVFLPGWN LIYTMQKHLE MNPHFGSHRY BACU005801/1-1218 TPFELIEALL KYIETLNVPG AVLVFLPGWN LIYTMQKHLE MNPHFGSHRY 701 750 ENSP00000356520/1-1270 QILPLHSQIP REEQRKVFDP VPVGVTKVIL STNIAETSIT INDVVYVIDS ENSBTAP00000026409/1-1287 QILPLHSQIP REEQRKVFDP VPSGVTKIIL STNIAETSIT INDVVYVIDS ENSTTRP00000007251/1-1153 QILPLHSQIP REEQRKVFDP VPAGVTKVIL STNIAETSIT INDVVYVIDS bmy_10502T0/1-1242 QILPLHSQIP REEQRKVFDP VPGGVTKVIL STNIAETSIT INDVVYVIDS BACU005801/1-1218 QILPLHSQIP REEQRKVFDP VPGGVTKVIL STNIAETSIT INDVVYVIDS 751 800 ENSP00000356520/1-1270 CKQKVKLFTA HNNMTNYATV WASKTNLEQR KGRAGRVRPG FCFHLCSRAR ENSBTAP00000026409/1-1287 CKQKVKLFTA HNNMTNYATV WASKTNLEQR KGRAGRVRPG FCFHLCSRAR ENSTTRP00000007251/1-1153 CXXKVKLFTA HNNMTNYATV WASKTNLEQR KGRAGRVRPG FCFHLCSRAR bmy_10502T0/1-1242 CKQKVKLFTA HNNMTNYATV WASKTNLEQR KGRAGRVRPG FCFHLCSRAR BACU005801/1-1218 CKQKVKLFTA HNNMTNYATV WASKTNLEQR KGRAGRVRPG FCFHLCSRAR 801 850 ENSP00000356520/1-1270 FERLETHMTP EMFRTPLHEI ALSIKLLRLG GIGQFLAKAI EPPPLDAVIE ENSBTAP00000026409/1-1287 FERLETHMTP EMFRTPLHEI ALSIKLLRLG GIGQFLAKAI EPPPLDAVIE ENSTTRP00000007251/1-1153 FERLETHMTP EMFRTPLHEI ALSIKLLRLG GIGQFLAKAI EPPPLDAVIE bmy_10502T0/1-1242 FERLETHMTP EMFRTPLHEI ALSIKLLRLG GIGQFLAKAI EPPPLDAVIE BACU005801/1-1218 FERLETHMTP EMFRTPLHEI ALSIKLLRLG GIGQFLAKAI EPPPLDAVIE 851 900 ENSP00000356520/1-1270 AEHTLRELDA LDANDELTPL GRILAKLPIE PRFGKMMIMG CIFYVGDAIC ENSBTAP00000026409/1-1287 AEHTLRELDA LDANDELTPL GRILAKLPIE PRFGKMMIMG CIFYVGDAIC ENSTTRP00000007251/1-1153 AEHTLRELDA LDTNDELTPL GRILAKLPIE PRLGKMMIMG CIFYVGDAVC bmy_10502T0/1-1242 AEHTLRELDA LDTNDELTPL GRILAKLPIE PRLGKMMIMG CIFYVGDAVC BACU005801/1-1218 AEHTLRELDA LDTNDELTPL GRILAKLPIE PRLGKMMIMG CIFYVGDAVC 901 950 ENSP00000356520/1-1270 TIAAATCFPE PFINEGKRLG YIHRNFAGNR FSDHVALLSV FQAWDDARMG ENSBTAP00000026409/1-1287 TISAATCFPE PFISEGKRLG YIHRNFAGNR FSDHVALLSV FQAWDDARMG ENSTTRP00000007251/1-1153 TISAATCFPE PFISEGKRLG YIHRNFAGNR FSDHVALLSV FQAWDDARMG bmy_10502T0/1-1242 TISAATCFPE PFISEGKRLG YIHRNFAGNR FSDHVALLSV FQAWDDARMG BACU005801/1-1218 TISAATCFPE PFISEGKRLG YIHRNFAGNR FSDHVALLSV FQAWDDARMG 951 1000 ENSP00000356520/1-1270 GEEAEIRFCE HKRLNMATLR MTWEAKVQLK EILINSGFPE DCLLTQVFTN ENSBTAP00000026409/1-1287 GEEAEIRFCE HKRLNMATLR MTWEAKVQLK EILINSGFPE ECLLTQVFTN ENSTTRP00000007251/1-1153 GEEAEIRFCE HKRLNMATLR MTWEAKVQLK EILINSGFPE XXXXXXXXXX bmy_10502T0/1-1242 GEEAEIRFCE HKRLNMATLR MTWEAKVQLK EILINSGFPE ECLLTQVFTN BACU005801/1-1218 GEEAEIRFCE HKRLNMATLR MTWEAKVQLK EILINSGFPE ECLLTQVFTN 1001 1050 ENSP00000356520/1-1270 TGPDNNLDVV ISLLAFGVYP NVCYHKEKRK ILTTEGRNAL IHKSSVNCPF ENSBTAP00000026409/1-1287 TGPDNNLDVV ISLLAFGVYP NVCYHKEKRK ILTTEGRNAL IHKSSVNCPF ENSTTRP00000007251/1-1153 XXXXXXXXXX XXXXXFGVYP NVCYHKEKRK ILITEGRNA- IHKSSVNCPF bmy_10502T0/1-1242 TGPDNNLDVV ISLLAFGVYP NVCYHKEKRK ILTTEGRNAL IHKSSVNCPF BACU005801/1-1218 TGPDNNLDVV ISLLAFGVYP NVCYHKEKRK ILTTEGRNAL IHKSSVNCPF 1051 1100 ENSP00000356520/1-1270 SSQDMKYPSP FFVFGEKIRT RAISAKGMTL VTPLQLLLFA SKKVQSDGQI ENSBTAP00000026409/1-1287 SSQDMKYPSP FFVFGEKIRT RAISAKGMTL VTPLQLLLFA SKKVQSDGQL ENSTTRP00000007251/1-1153 SSQDMKYPSP FFVFGEKIRT RAISAKGMTL VTPLQLLLFA SKKVQSDGQI bmy_10502T0/1-1242 SSQDMKYPSP FFVFGEKIRT RAISAKGMTL VTPLQLLLFA SKKVQSDGQI BACU005801/1-1218 SSQDMKYPSP FFVFGEKIRT RAISAKGMTL VTPLQLLLFA SKKVQSDGQI 1101 1150 ENSP00000356520/1-1270 VLVDDWIKLQ ISHEAAACIT GLRAAMEALV VEVTKQPAII SQLDPVNERM ENSBTAP00000026409/1-1287 VLVDDWIRLQ ISHEAAACIT ALRAAMEALV VEVTKQPGII SQLDPVNERM ENSTTRP00000007251/1-1153 VLVDDWIRLQ ISHEAAACIT ALRAAMEALV VEVTKQPDII SQLDPVNERM bmy_10502T0/1-1242 VLVDDWIRLQ ISHEAAACIT ALRAAMEALV VEVTQQPDII SQLDPVNEHM BACU005801/1-1218 VLVDDWIRLQ ISHEAAACIT ALRAAMEALV VEVTQQPDII SQLDPVNEHM 1151 1200 ENSP00000356520/1-1270 LNMIRQISRP SAAGINLMIG STRYGDGPRP PKMARYDNGS GYRRGGSSY- ENSBTAP00000026409/1-1287 LNTIRQISRP SAAGINLMIG TTRYGDGPRP PKMARYDNGS GYRRGGSSYS ENSTTRP00000007251/1-1153 LNTIRQISRP SAAGINLMIG ST-------- ---------- ---------- bmy_10502T0/1-1242 LNTIRQISRP SAAGINLMIG STRYGDGPRP PKMARYDNGS GYRRGGSSY- BACU005801/1-1218 LNTIRQISRP SAAGINLMIG STRYGDGPRP PKMARYDNGS GYRRGGSSY- 1201 1250 ENSP00000356520/1-1270 ---------- -----SGGGY GGGYSSGGYG SGGYGGSANS FRAGY----- ENSBTAP00000026409/1-1287 GGGYGLGGYG TGGYGGGGGY GG---RGGYS GGGYGGGSNS FRGSYVGGGG ENSTTRP00000007251/1-1153 ---------- ---------- ---------- ---------- ---------- bmy_10502T0/1-1242 ---------- -----GGGGY GG---SGSYG GSGYGGGSSS YWGGY----- BACU005801/1-1218 ---------- -----GGGGY GG---SGSYG GSGYGGGSSS YWGGD----- 1251 1300 ENSP00000356520/1-1270 -GAGVGGGYR GVSRGGFRGN SGGDYRGPS- GGYRGSGGFQ RGGGRGAYGT ENSBTAP00000026409/1-1287 GVGGGGGGFR GLSRGGYRGM SGGDYRGESG GGYRGSGGFQ RGGGRGGYGG ENSTTRP00000007251/1-1153 ---------- ---------- ---------- ---------- ---------- bmy_10502T0/1-1242 ---------- ---RGGSRGG YGGDYRGSSG GGYRGSGGFQ RGGGRGGYGS BACU005801/1-1218 ---------- ---RGGSRGG YGGDYRGSSG GGYRGSGGFQ RGGGRGGYGS 1301 1350 ENSP00000356520/1-1270 GYFGQGRGGG GY ENSBTAP00000026409/1-1287 GYFGQGRGGG GY ENSTTRP00000007251/1-1153 ---------- -- bmy_10502T0/1-1242 GYFGQGRGGG GY BACU005801/1-1218 GYFGQGRGGG GY