KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:28:56 2014 Check: 00 .. Name: ENSTTRP00000002215/1-774 Len: 869 Check: 4459 Weight: 1.00 Name: ENSP00000333942/1-790 Len: 869 Check: 6040 Weight: 1.00 Name: ENSBTAP00000026436/1-789 Len: 869 Check: 5050 Weight: 1.00 Name: bmy_05616T0/1-813 Len: 869 Check: 4441 Weight: 1.00 Name: BACU002437/1-861 Len: 869 Check: 7522 Weight: 1.00 // 1 50 ENSTTRP00000002215/1-774 MGTRKKVHAF VRVKPTDDFA HEMIKYGDDN KTINIHLKKD TRRGVVNNQQ ENSP00000333942/1-790 MGTRKKVHAF VRVKPTDDFA HEMIRYGDDK RSIDIHLKKD IRRGVVNNQQ ENSBTAP00000026436/1-789 MGSRKKVHAF VRVRPTDDFA HEMIKYRDDN KTIDIHLKKD SRRGVVNNQQ bmy_05616T0/1-813 MATF------ ---------- ---------- -TLGFWLAL- ---------- BACU002437/1-861 MGTRKRVHAF VRVKPTDDFA HEMIKYGGDN KTIDIHLKKD TRRGVVNNQQ 51 100 ENSTTRP00000002215/1-774 TDWSFKLDGV LHDASQDLVY ETVAKDVVSQ ALNGYNGTIM CYGQTGAGKT ENSP00000333942/1-790 TDWSFKLDGV LHDASQDLVY ETVAKDVVSQ ALDGYNGTIM CYGQTGAGKT ENSBTAP00000026436/1-789 TDWSFKLDRV LHDASQDLVY ETVAKDVVSQ ALNGFNGTIM CYGQTGAGKT bmy_05616T0/1-813 --------GM LGDGRA--IL GAVFLDVTKT CFEMFAGTIM CYGQTGAGKT BACU002437/1-861 TDWSFKLDGV LHDASQDLVY ETVAKDVVSQ ALNGYNGTIM CYGQTGAGKT 101 150 ENSTTRP00000002215/1-774 YTMTGATENY KHRGILPRAL QQXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000333942/1-790 YTMMGATENY KHRGILPRAL QQVFRMIEER PTHAITVRVS YLEIYNESLF ENSBTAP00000026436/1-789 YTMTGATESY KHRGILPRAL QQVFKMIEER PTHAITVRVS YLEIYNESLF bmy_05616T0/1-813 YTMTGATENY KHRGILPRAL QQVFRMIEER PTQAITVRVS YLEIYNESLF BACU002437/1-861 YTMTGATENY KHRGILPRAL QQVFKMIEEC PTQAITVRVS YLEIYNESLF 151 200 ENSTTRP00000002215/1-774 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXGET ENSP00000333942/1-790 DLLSTLPYVG PSVTPMTIVE NPQGVFIKGL SVHLTSQEED AFSLLFEGET ENSBTAP00000026436/1-789 DLLSTLPYVG PSVTPMTIVE NPQGVFIKGL SVHLTSQEED AFSLLFEGET bmy_05616T0/1-813 DLLSTLPYVE PSVTPMTIVE SPQGVFIKGL SVHLTSQEED AFSLLFEGET BACU002437/1-861 DLLSTLPYAE PSVTPMTIVE SPQGVFIKGL SVHLTSQEED AFSLLFEGET 201 250 ENSTTRP00000002215/1-774 NRIIASHTMN KNSSRSHCIF TIYVEAHSRT LSDAKYITSK INLVDLAGSE ENSP00000333942/1-790 NRIIASHTMN KNSSRSHCIF TIYLEAHSRT LSEEKYITSK INLVDLAGSE ENSBTAP00000026436/1-789 NRIIASHTMN KNSSRSHCIF TIYVEARSRT LSDEKYVTSK INLVDLAGSE bmy_05616T0/1-813 NRIIASHTMN KNSSRSHCIF TIYVEAHSRT LSDEKYITSK INLVDLAGSE BACU002437/1-861 NRIIASHTMN KNSSRSHCIF TIYVEAHSRT LSDEKYITSK INLVDLAGSE 251 300 ENSTTRP00000002215/1-774 RLGKSRSEGR VLKEATYINK SLSFLEQAII ALGDQKRDHI PFRQCKLTHA ENSP00000333942/1-790 RLGKSGSEGQ VLKEATYINK SLSFLEQAII ALGDQKRDHI PFRQCKLTHA ENSBTAP00000026436/1-789 RLGKSRSEGR VLKEATYINK SLSFLEQAII ALGDQKRDHI PFRQCKLTHA bmy_05616T0/1-813 RLGKSGSEGR VLKEATYINK SLSFLEQAII ALGDQKRDHI PFRQCKLTHA BACU002437/1-861 RLGKSGSEGR VLKEATYINK SLSFLEQAII ALGDQKRDHI PFRQCKLTHT 301 350 ENSTTRP00000002215/1-774 LKDSL----- ---------- ---------- ---------- ---------- ENSP00000333942/1-790 LKDSL----- ---------- ---------- ---------- ---------- ENSBTAP00000026436/1-789 LKDSL----- ---------- ---------- ---------- ---------- bmy_05616T0/1-813 LKDSLGEEPL LKLLPLLEVP SHFPSSLNQL AESFITLKTK VEGFSCDVFP BACU002437/1-861 LKDSL--EPL LKLLPLPEVP SHFPSSLNQL AESFITLKTK VEGFSCDVFL 351 400 ENSTTRP00000002215/1-774 ---------- ---------- -------GGN CNMILVTNIY GEASQLEETX ENSP00000333942/1-790 ---------- ---------- -------GGN CNMVLVTNIY GEAAQLEETL ENSBTAP00000026436/1-789 ---------- ---------- -------GGN CNMVLVTNIY GEAAQLEETL bmy_05616T0/1-813 SLTEELGLYL VILVFPGVRI GPNGTVVGGN CNMVLVTNIY GEAAQLEETL BACU002437/1-861 SLTEELGLCL VILVFPGFRI GPSGMVVGGN CNMVLVTNIY GEAAQLEETL 401 450 ENSTTRP00000002215/1-774 XXXXXXXXXX XXXXXXXXXX XXXXXRMVKN LEKELALLKQ ELAIHDSLAN ENSP00000333942/1-790 SSLRFASRMK LVTTEPAINE KYDAERMVKN LEKELALLKQ ELAIHDSLTN ENSBTAP00000026436/1-789 SSLRFASRMK LVTTEPTVNE KYDAERMVRN LEKELALLKQ ELAIHDSLAN bmy_05616T0/1-813 SSLRFASRMK LVTTEPAINE KYDAERMVKN LEKELALLKQ ELAIHDSLAN BACU002437/1-861 SSLRFASRMK LVTTEPAINE KYDAERMVKN LEKELALLKQ ELAIHDSLAN 451 500 ENSTTRP00000002215/1-774 RTLVNYDPMD EIQIAEINSQ VRRYLEGTLD EIDIINLRQI QEVFNQFRVV ENSP00000333942/1-790 RTFVTYDPMD EIQIAEINSQ VRRYLEGTLD EIDIISLRQI KEVFNQFRVV ENSBTAP00000026436/1-789 RTLVNYDPMD EIQIAEINSQ VRRYLEGTLE EIDIINLRQI QEVFNQFRVV bmy_05616T0/1-813 RTLVNYDPMD EIQIAEINSQ VRRYLEGTLD EIDIINLRQI QEVFNQFRVV BACU002437/1-861 RTLVNYDPMD EIQIAEINSQ VRRYLEGTLD EIDIINLRQI QEVFNQFRVV 501 550 ENSTTRP00000002215/1-774 LSQQEQEVES TLRRKYTLID KNDFEAISAV QKAGLVDDDG HLVGEPDGQG ENSP00000333942/1-790 LSQQEQEVES TLRRKYTLID RNDFAAISAI QKAGLVDVDG HLVGEPEGQN ENSBTAP00000026436/1-789 LSQQEQEVES TLRRKYTLID KNDYAAISAV QKAGLVDADG HLVGEPDGQG bmy_05616T0/1-813 LSQQEQEVES TLRRKYTLID KNDFAAISAV QKAGLVDVDG HLVGEPDGQG BACU002437/1-861 LSQQEQEVES ALRRKYTLID KNDFSAISAV QKAGLVDVDG HLVGEPDGQG 551 600 ENSTTRP00000002215/1-774 FGLGVAPFST RPGKKSKSKK MFKEQLGXXX XXXXXXXXXX XXXXXXXXXX ENSP00000333942/1-790 FGLGVAPFST KPGKKAKSKK TFKEPLSSLA RKEGASSPVN GKDLDYVSTS ENSBTAP00000026436/1-789 FGLGVAPFST KPGKKSKSKK MFKEQLSSSA RKEGASSPLS GKDLD-VSTS bmy_05616T0/1-813 FGLGVAPSST RPGKKSKSKK MFKEQLSSLA RKEGASSPVS GKDLD-ASTS BACU002437/1-861 FGLGVAPSST RPGKKSKSKK MFKEQLSSLA RKEGARSPVS GKDLD-ASTS 601 650 ENSTTRP00000002215/1-774 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXPSTPPTKP ENSP00000333942/1-790 KTQLVPSSKD GDVKDMLSRD RETSSIEPLP SDSPKEELRP IRPDTPPSKP ENSBTAP00000026436/1-789 KTQLTPSSKD GDVKDMVVRD RETSNTEPLA SDSPKEELRP PRPSTPPAKP bmy_05616T0/1-813 KTQLTPSSKD GDVKDMLLQD RETSSIEPLA SESPKEELHP PRPSTPPAKP BACU002437/1-861 KTQLTPSSKD GDVKDMLLQD RETSSIEPLA SESPKEELHP PRPSTPPAKP 651 700 ENSTTRP00000002215/1-774 VAFEDFKNER GSEINRIFKE NKSILNERRK RASETTQRIN AIKREIDMTK ENSP00000333942/1-790 VAFEEFKNEQ GSEINRIFKE NKSILNERRK RASETTQHIN AIKREIDVTK ENSBTAP00000026436/1-789 VAFEDFKNER GSEINRIFKE NKSILNERRK RASETTQRIN AIKREIDMTK bmy_05616T0/1-813 VAFEDFKNER GSEINRIFKE NKSILNERRK RASETTQRIN AIKREIDMTK BACU002437/1-861 VAFEDFKNER GSEINRIFKE NKSILNERRK RASETTQRIN AIKREIDMTK 701 750 ENSTTRP00000002215/1-774 EALNFHKSLR EKQXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000333942/1-790 EALNFQKSLR EKQGKYENKG LMIIDEEEFL LILKLKDLKK QYRSEYQDLR ENSBTAP00000026436/1-789 EALNLQKSLR EKQGEYENKG LMIIDEEEFL LILKLKDLKK QYRTEYQDLR bmy_05616T0/1-813 EALNFQKSLR EKQGEYENKG LMIIDEEEFL LILKLKDLKK QYRTEYQDLQ BACU002437/1-861 EALNFHKSLR EKQGEYENKG LMIIDEEEFL LILKLKDLKK QYRTEYQDLQ 751 800 ENSTTRP00000002215/1-774 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ALKPGGSIRP ENSP00000333942/1-790 DLRAEIQYCQ HLVDQCRHRL LMEFDIWYNE SFVIPEDMQM ALKPGGSIRP ENSBTAP00000026436/1-789 DLRAEIQYCQ HLVDQCRHRL LTEFDIWYNE SFFVPEDLQM AVKPGGSIRP bmy_05616T0/1-813 DLRAEIQYCQ HLVDQCRHRL LTEFDIWYNE SFFVPEDLQA ALKPGGSIRP BACU002437/1-861 DLRAEIQYCQ HLVDQCRHRL LTEFDIWYNE SFFVPEDLQV ALKPGDSIRP 801 850 ENSTTRP00000002215/1-774 GMMPLSRIVS LGEDDQDRFS RLQQTMLPEG PDSVSFYNAK VKTEQK---- ENSP00000333942/1-790 GMVPVNRIVS LGEDDQDKFS QLQQRVLPEG PDSISFYNAK VKIEQKHNYL ENSBTAP00000026436/1-789 GMMPLSKIVS LGEDDQDRFS QLQQTTLPEG PDSVSFYNAK VKMEQKHNYL bmy_05616T0/1-813 GMMPLSRIVS LGEDDQDRFS RLQQMMLPEG PDSVSFYNAK VKTEQKHNYL BACU002437/1-861 GMMPLSRILS LGEDDQDRFS RLQQTMLPEG PDSVSFYNAK VKTEQK---- 851 900 ENSTTRP00000002215/1-774 ---------- --------- ENSP00000333942/1-790 KTMMGLQQAH RK------- ENSBTAP00000026436/1-789 KTMMGLQQAH RK------- bmy_05616T0/1-813 KTMMGLQQTH RK------- BACU002437/1-861 -VTRGIHVSR KARPQGPHY